Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 YBX1 Gene 0 1032.42 1984.67 4060.24 1346.04 1293.17 1269.25 1315.83 2160.56 1471.88 2261.98 3255.44 1636.00 1397.84 2255.47 2620.84 1662.67 2100.41 1131.75 862.34 1159.77 1438.75 1419.19 763.15 2 321358 Transcript 1 2.12 4.65 3.06 0.00 2.10 0.92 0.95 0.62 0.97 4.59 84.63 3.09 12.73 9.86 21.14 3.40 44.56 1.72 4.10 2.74 57.61 0.30 1.05 3 332220 Transcript 0 14.60 34.73 90.65 68.06 12.39 40.49 17.22 56.81 63.31 37.88 22.16 18.01 27.11 26.13 16.94 10.68 8.51 20.40 47.72 32.66 11.80 2.57 4.35 4 318612 Transcript 0 0.00 0.00 1615.78 447.63 0.00 0.00 0.00 737.91 552.87 903.41 0.84 1.00 0.00 0.00 0.00 0.00 0.00 514.58 0.00 0.00 0.00 0.00 0.00 5 436427 Transcript 0 2.23 26.85 35.34 18.00 4.73 60.14 12.02 9.65 12.95 3.60 4.99 1.07 11.22 5.48 2.65 2.18 2.15 6.18 3.36 8.17 7.16 8.45 6.35 6 467957 Transcript 0 20.44 60.90 136.89 52.65 57.04 82.13 59.26 36.12 36.18 51.28 99.80 68.82 66.40 37.91 37.26 37.54 67.67 15.32 18.44 34.88 47.50 25.66 13.83 7 ER1a ExonRegion 0 2.12 4.65 3.06 0.00 2.10 0.92 0.95 0.62 0.97 4.59 84.63 3.09 12.73 9.86 21.14 3.40 44.56 1.72 4.10 2.74 57.61 0.30 1.05 8 ER1b ExonRegion 1 9.94 13.96 14.97 2.07 3.78 32.21 12.65 13.28 17.23 20.06 686.62 81.78 98.94 90.05 95.74 35.41 315.45 29.39 49.45 16.78 462.95 17.61 23.00 9 E1_Ac KnownBoundary 0 5.70 11.71 64.81 18.15 3.40 9.48 6.32 21.65 31.19 37.34 650.69 125.29 134.73 80.41 57.61 11.88 382.70 38.14 22.49 18.09 691.04 14.57 8.62 10 ER1c ExonRegion 1 80.57 138.90 134.23 28.72 32.55 98.17 70.30 51.83 60.86 87.76 875.65 170.54 223.08 597.89 452.94 247.04 468.01 38.82 121.04 175.42 564.39 174.20 104.41 11 E1_Da KnownBoundary 0 496.98 719.02 1226.12 363.02 197.45 401.42 396.71 646.67 502.57 684.04 1866.21 451.05 734.69 2570.21 2053.04 996.49 1210.94 497.77 621.66 773.27 1157.40 807.00 511.07 12 E1b_E1e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER1d ExonRegion 0 388.17 542.15 344.33 74.96 148.77 322.75 293.65 138.28 138.33 227.09 1503.80 379.26 646.29 2200.03 1704.20 836.95 1067.51 114.56 442.77 619.15 993.43 710.90 404.67 14 ER1e ExonRegion 1 332.94 447.92 342.25 74.90 126.57 252.59 248.79 138.95 136.99 225.94 1253.02 239.81 462.89 1536.91 1180.43 621.30 885.93 105.64 352.47 464.57 793.43 600.69 332.10 15 E1c_E1f KnownJunction 0 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER1f ExonRegion 1 231.55 270.87 310.02 68.69 88.30 161.37 160.46 132.05 119.07 206.67 690.04 96.98 250.45 656.47 463.04 284.73 555.87 86.84 173.92 238.72 411.65 360.45 172.67 17 ER1g ExonRegion 0 155.72 185.35 272.03 70.09 61.35 131.90 122.75 111.11 89.02 189.16 396.93 40.51 167.50 236.08 178.43 158.58 369.94 62.30 71.67 122.80 246.34 185.73 73.63 18 E1d_E2c KnownJunction 0 526.61 1163.67 1393.03 562.33 1207.47 1270.69 1403.58 857.67 719.47 1020.67 2737.38 1525.10 2153.75 532.82 697.82 1184.90 2010.38 485.54 423.45 792.45 1036.32 688.39 498.52 19 ER1h ExonRegion 1 74.92 146.01 335.51 121.30 84.55 206.85 167.88 145.88 135.86 242.68 262.10 38.10 289.84 53.27 47.58 79.06 316.23 60.61 11.47 85.96 168.80 37.09 37.00 20 ER1i ExonRegion 0 240.88 577.25 849.71 343.12 573.37 671.00 695.84 549.24 473.40 676.89 1447.28 726.32 1175.63 265.27 311.12 623.44 1102.66 234.84 209.17 414.28 575.80 341.90 265.28 21 ER2a ExonRegion 0 4.46 10.42 7.99 0.05 0.80 28.86 4.03 0.86 1.45 1.50 0.76 2.14 2.32 1.36 0.85 0.00 0.27 0.80 2.02 5.42 0.86 0.74 0.48 22 E2_Ab KnownBoundary 0 0.00 11.64 22.74 5.79 0.00 59.28 2.08 9.20 4.69 3.20 10.21 0.00 6.01 3.00 5.19 0.00 4.11 2.16 8.56 5.75 2.78 5.82 4.18 23 ER2b ExonRegion 0 7.43 25.96 49.57 15.57 2.27 47.00 9.48 9.37 19.11 12.01 8.06 2.03 4.56 8.27 11.95 2.67 5.46 6.05 5.40 9.63 13.92 4.35 5.38 24 E2_Da KnownBoundary 0 18.52 50.19 82.79 34.46 18.68 41.17 23.58 8.01 18.08 22.30 21.90 18.91 0.00 7.59 18.42 0.00 19.35 6.01 12.89 11.19 16.74 0.00 0.00 25 E2a_E3a KnownJunction 0 0.00 43.28 62.68 35.96 8.66 91.42 20.01 18.44 24.45 5.69 9.21 0.00 20.13 9.59 4.45 4.36 4.02 11.57 4.71 10.93 13.47 16.17 12.21 26 ER2c ExonRegion 0 20.44 60.90 136.89 52.65 57.04 82.13 59.26 36.12 36.18 51.28 99.80 68.82 66.40 37.91 37.26 37.54 67.67 15.32 18.44 34.88 47.50 25.66 13.83 27 E2_Ac KnownBoundary 0 0.00 32.95 99.43 30.33 19.61 66.33 22.66 12.20 9.37 15.04 25.11 5.70 0.00 33.61 8.90 12.22 9.35 6.47 0.00 11.82 11.86 11.21 4.01 28 ER2d ExonRegion 0 742.93 1606.98 3423.38 1213.29 1809.74 2095.13 2323.32 2118.26 1668.21 2392.32 5560.40 2821.71 3032.81 3303.28 3087.81 2423.18 3837.16 1177.66 1202.20 1691.96 2110.84 1782.07 1034.44 29 E2b_E3a KnownJunction 0 1150.65 1187.88 3856.90 1349.81 1342.11 1805.21 2176.43 2338.92 1730.10 2549.28 6175.56 2127.39 3862.90 4565.15 4447.51 3132.17 4136.88 1481.00 1670.73 1964.75 2275.26 2441.20 1353.01 30 ER3a ExonRegion 0 2114.71 1249.22 5979.63 2154.12 1626.46 1920.96 1829.21 3576.88 2809.27 4052.79 6859.29 3238.57 3638.08 4968.23 4633.81 4315.09 4580.38 2500.88 2333.65 2444.11 2898.66 3084.65 1688.48 31 E3a_E4a KnownJunction 0 4606.37 1717.39 6381.35 2315.92 2631.67 2211.11 2030.73 3616.86 2852.81 4128.12 7350.34 4529.23 3383.06 5439.25 6157.01 5168.22 5239.36 2271.19 2978.53 2979.82 3312.38 3773.39 1906.67 32 E3a_E5a KnownJunction 0 14.60 34.73 90.65 68.06 12.39 40.49 17.22 56.81 63.31 37.88 22.16 18.01 27.11 26.13 16.94 10.68 8.51 20.40 47.72 32.66 11.80 2.57 4.35 33 ER4a ExonRegion 0 1779.71 968.03 7659.59 2572.61 888.41 1009.51 847.31 4212.57 3299.13 4860.47 9124.66 3068.20 2140.53 3929.70 3506.52 3129.95 6429.16 2520.06 1824.43 2605.66 3731.64 2378.87 1387.82 34 E4a_E5a KnownJunction 0 1920.86 1489.54 8149.68 2738.11 1270.46 1790.84 1686.57 4791.45 3432.37 5286.54 9427.49 6414.14 3377.70 5830.51 5503.82 4480.53 6569.79 3013.33 2198.18 2900.18 4194.62 3175.02 2187.17 35 ER5a ExonRegion 0 1361.31 1864.27 7159.93 2472.37 1865.16 2613.83 2337.88 3943.93 3033.38 4418.50 6697.21 4211.62 4201.63 4606.18 4558.39 4114.15 4834.96 3439.58 2122.86 2388.00 3382.16 2788.49 1884.97 36 E5_Da KnownBoundary 1 1467.59 2235.46 3968.64 1447.17 1806.54 2671.08 2507.25 2063.81 1440.64 2051.80 1756.08 4618.20 2882.12 4484.34 5712.36 5741.74 1324.64 2554.52 2857.02 1573.70 968.61 2255.41 2543.65 37 E5a_E5b KnownJunction 0 0.00 0.00 1817.23 574.92 0.00 0.00 0.00 873.32 642.99 974.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 817.09 0.00 0.00 0.00 0.00 0.00 38 E5b_E5c KnownJunction 0 0.00 0.00 972.44 326.73 0.00 0.00 0.00 461.47 384.98 595.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 350.99 0.00 0.00 0.00 0.00 0.00 39 E5_Ac KnownBoundary 0 645.52 1197.62 3504.58 1002.84 899.66 1324.41 1410.47 1613.55 1230.83 1729.51 3079.15 2498.76 1665.48 3777.87 3968.74 2536.68 2516.97 1807.12 1295.94 1574.60 1801.80 1303.91 1248.18 40 ER5b ExonRegion 1 976.14 1843.24 5168.86 1657.54 888.88 1834.17 2041.28 2555.00 1896.40 2668.39 1325.20 4222.10 2423.81 4548.51 5593.04 4981.28 1418.73 2974.88 2318.31 1659.99 952.44 2276.87 2234.79 41 ER5c ExonRegion 1 763.00 1525.90 5334.71 1597.78 567.39 1553.50 1681.03 2494.76 1898.62 2762.49 1743.09 3682.86 2028.67 4498.16 5483.37 4322.07 1726.04 2664.36 2070.01 1604.57 1306.03 2023.62 1951.69 42 ER5d ExonRegion 0 618.87 1358.43 5674.45 1591.03 470.93 1485.01 1538.44 2629.32 1995.95 3009.94 2774.87 2873.03 1881.64 3990.79 4436.60 3184.93 2547.63 2586.11 1569.11 1777.44 1896.07 1633.48 1544.09 43 ER5e ExonRegion 0 635.22 1281.03 5675.23 1525.03 324.77 1054.26 1205.92 2558.22 1942.76 3016.47 4663.18 1478.78 1409.06 2724.76 2339.59 1982.78 3958.29 2247.56 1076.95 2028.05 2769.10 1404.42 1148.41 44 E5_Dc KnownBoundary 1 434.74 473.80 1591.31 434.54 280.39 388.53 529.86 728.74 567.79 870.25 2623.35 208.12 421.73 754.14 629.21 532.17 2064.33 871.10 229.09 946.29 1392.40 409.16 326.86 45 E5c_E5d KnownJunction 0 0.00 0.00 3611.26 932.72 0.00 0.00 0.00 1792.88 1284.97 2121.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1353.54 0.00 0.00 0.00 0.00 0.00 46 E5_Ad KnownBoundary 1 372.73 711.65 1588.38 459.58 195.33 412.43 382.40 714.28 531.79 824.55 2261.78 166.10 200.47 680.62 642.19 750.40 1716.69 499.18 475.50 835.01 1411.80 761.13 544.53 47 ER5f ExonRegion 1 749.67 1392.59 5377.91 1407.86 292.73 931.20 962.52 2376.97 1838.34 2813.13 5432.99 697.04 853.59 2140.26 1381.00 1354.10 4346.62 1841.84 822.46 1986.38 3250.91 1357.62 923.87 48 ER5g ExonRegion 0 1239.20 1631.89 4418.90 1172.72 454.22 1293.45 1146.40 1817.81 1438.49 2144.15 2730.06 901.10 855.00 2184.59 2231.94 1292.71 2128.46 1402.79 670.25 1204.33 1890.99 1083.98 737.76 49 E5d_E6a KnownJunction 1 2252.03 2251.97 4191.54 1174.01 886.84 1929.85 1830.72 1521.22 1229.99 1673.37 879.38 1354.19 1849.72 1244.11 4393.73 1626.07 595.14 1051.51 465.14 765.98 446.40 544.00 772.11 50 ER6a ExonRegion 1 1580.05 1849.79 4365.27 1163.48 619.35 1628.59 1631.91 1618.70 1323.62 1986.40 215.40 1104.69 2754.51 1078.72 3794.20 1033.84 164.63 1044.04 255.43 688.03 166.45 335.51 552.55 51 E6_Da KnownBoundary 1 1386.39 1590.90 1979.05 633.19 679.63 1341.50 1418.68 670.99 550.17 760.92 784.51 729.69 2841.21 873.75 1792.70 988.80 428.05 398.16 315.77 614.50 133.38 276.84 542.31 52 E6_Db KnownBoundary 0 264.42 371.32 420.80 136.35 166.81 318.62 343.01 142.40 104.51 149.89 300.34 15.30 0.00 26.43 99.76 150.39 138.85 63.42 90.36 148.67 33.24 114.38 81.86 53 E6b_E6b KnownJunction 0 0.00 0.00 3292.52 851.44 0.00 0.00 0.00 1299.79 1004.27 1728.78 5.05 0.00 0.00 0.00 0.00 0.00 0.00 565.88 0.00 0.00 0.00 0.00 0.00 54 E6_Ab NovelBoundary 1 1462.26 1423.50 5590.37 1405.65 1161.55 1751.09 1601.87 2422.55 2079.41 2791.71 2534.22 369.87 561.98 846.61 946.91 1330.59 1955.21 2418.51 684.07 1072.02 1455.23 888.07 679.75 55 ER6b ExonRegion 1 1763.46 2211.90 7302.75 1843.90 1070.63 2211.91 2236.58 2927.46 2429.70 3570.03 1062.37 682.70 1915.58 1325.89 2208.03 1335.41 819.65 2519.29 536.93 1136.43 678.60 724.67 716.91 56 ER6c ExonRegion 1 1828.67 2426.47 7953.64 1991.18 1638.63 2826.98 2791.70 3208.70 2650.06 3859.10 3439.79 736.88 967.08 1914.19 2437.63 1941.99 2486.23 2748.34 852.40 1488.51 2249.55 1181.36 1024.30 57 E6c_E7a KnownJunction 0 5655.52 4036.91 9815.53 2356.04 5536.08 7386.94 6497.70 3726.69 2915.16 4103.32 9959.63 2316.15 2537.17 5554.09 6814.04 6502.40 7452.82 3788.26 3354.17 3280.87 6165.32 2427.97 2799.74 58 ER6d ExonRegion 1 3463.82 3111.92 8663.82 2141.59 3214.82 5015.81 4341.93 3503.35 2796.63 4152.98 6883.83 1491.93 1771.11 3692.65 4265.81 4402.11 5142.80 3184.23 2252.58 2519.00 4444.44 1881.21 1963.83 59 E7_Ab NovelBoundary 0 1853.14 2031.94 4944.41 1309.79 3001.44 3507.13 3416.47 1717.88 1177.13 1919.26 2499.26 1202.79 1718.72 2732.61 2980.41 1343.49 1929.50 1318.63 591.83 1487.16 1725.50 737.37 775.61 60 ER7a ExonRegion 0 3525.66 3131.71 9041.05 2286.73 4262.47 5754.85 4861.40 3584.57 2840.23 4177.52 7779.50 2079.69 2520.89 5013.31 5705.73 4632.27 5803.68 3506.90 2305.07 2672.03 5052.32 1833.50 2095.08 61 ER7b ExonRegion 0 3564.92 3107.99 9158.01 2287.83 4679.88 5785.02 4899.54 3436.17 2695.02 3914.77 6263.24 1985.78 2373.16 4683.96 5319.93 4177.82 4762.09 3351.20 2106.59 2454.60 4064.37 1545.28 1882.39 62 ER7c ExonRegion 0 1721.20 3973.69 7407.94 2244.63 1895.29 1942.82 2115.57 3043.01 2215.21 3384.90 3934.30 1491.30 1180.98 3889.84 4742.92 2465.08 2855.09 1663.71 1268.10 1737.77 2363.17 1800.78 1163.77 63 E7_Db NovelBoundary 0 1991.76 5483.17 9027.89 3439.92 2263.58 2156.37 1984.36 4419.40 2921.01 4203.20 5979.30 2312.25 1590.64 5492.82 6583.37 3833.69 3148.29 2813.15 2049.66 2457.04 2267.85 3488.96 1802.36 64 E7c_E8a KnownJunction 0 3854.54 7201.22 7822.31 3274.64 9862.23 5490.93 5415.81 4758.35 3045.37 4485.03 8214.19 2652.41 3286.64 5860.82 7649.44 4345.18 5173.63 2327.65 2758.67 2827.25 3652.59 3608.80 2032.84 65 ER7d ExonRegion 0 2200.02 5432.48 7783.32 3022.44 4633.44 3213.88 2892.77 4272.85 2818.49 4152.13 7054.08 2539.30 2749.11 5826.82 6603.72 3923.49 3837.98 2499.59 2163.38 2461.49 2764.66 3396.94 1792.58 66 ER8a ExonRegion 0 1696.82 4703.55 5913.00 2210.75 2859.98 1623.83 2079.17 3912.31 2051.01 3471.46 4264.66 2786.12 1686.29 2752.02 3955.89 1657.26 1923.37 626.26 852.78 1403.02 929.16 2617.97 739.95