Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-69E11.3 Gene 0 5.18 5.87 9.85 13.38 9.40 10.12 7.56 12.76 14.55 15.54 5.82 6.09 7.10 5.88 7.88 1.68 7.87 3.69 1.80 10.81 10.64 3.14 8.65 2 427240 Transcript 0 2.85 2.99 4.11 6.71 4.69 5.67 3.93 6.35 7.38 7.50 3.11 3.41 4.49 4.02 4.73 0.76 4.12 1.45 0.89 5.52 5.50 1.49 4.39 3 IG21 Intergenic 0 7.66 5.99 26.76 13.38 15.51 16.13 12.81 15.66 16.29 19.34 4.21 3.54 5.90 3.96 8.50 4.12 8.12 10.46 7.57 10.05 10.72 3.01 23.67 4 IG21_SR2 SilentIntergenicRegion 0 5.99 2.94 25.08 8.58 10.18 4.05 8.35 8.42 10.05 9.58 1.94 2.01 4.22 0.78 3.70 3.74 4.36 12.80 9.03 6.43 5.54 1.44 14.48 5 IG21_AR1 ActiveIntergenicRegion 0 10.73 10.75 32.68 23.83 16.81 40.71 19.58 23.89 29.91 40.53 8.57 3.05 3.55 11.78 20.81 4.77 19.20 8.52 8.20 19.62 23.50 6.17 46.98 6 IG21_SR1 SilentIntergenicRegion 0 7.45 6.35 23.90 11.16 22.88 12.09 13.54 19.46 13.38 14.84 3.70 6.46 10.84 1.62 4.49 4.13 3.63 8.58 4.66 6.76 6.87 2.50 16.25 7 ER1a ExonRegion 0 3.08 0.12 0.00 0.00 7.61 0.00 1.93 0.00 0.00 0.00 0.00 4.76 5.70 0.35 1.70 0.00 2.40 0.00 2.32 3.22 0.00 0.00 4.20 8 E1_Da NovelBoundary 0 3.48 3.22 40.24 24.84 3.57 0.00 7.55 13.10 9.17 7.25 2.21 6.30 0.00 7.53 12.49 4.36 0.00 4.27 0.00 3.07 3.03 0.00 16.65 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E2_Aa NovelBoundary 0 13.85 26.25 17.83 11.52 18.25 6.47 16.43 9.12 7.75 15.53 2.16 6.90 13.31 4.94 9.77 0.00 4.77 0.00 0.00 14.19 0.00 0.00 0.00 11 ER2a ExonRegion 0 2.12 1.95 0.00 0.14 0.27 0.00 0.00 0.00 0.15 0.02 0.00 7.51 7.37 13.46 13.20 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.12 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 I2_AR1 ActiveIntronRegion 0 5.80 10.92 8.58 10.85 7.04 3.06 14.51 6.66 8.55 20.52 2.72 4.33 4.69 3.25 6.98 2.75 4.28 3.97 0.00 1.65 2.20 0.93 11.20 14 ER3a ExonRegion 0 2.18 3.88 1.23 5.57 9.90 0.10 5.78 1.13 4.96 4.19 1.07 8.86 3.77 2.09 3.25 4.25 7.28 2.71 3.04 5.95 0.35 0.95 2.80 15 E3_Da NovelBoundary 0 0.00 0.00 5.38 17.48 7.72 23.74 10.20 0.00 16.03 4.62 0.00 0.00 13.64 0.00 0.00 7.43 0.00 16.08 7.53 7.99 0.00 0.00 16.73 16 E3a_E4a KnownJunction 0 0.00 0.00 0.00 3.46 0.00 0.00 0.00 2.55 1.50 1.61 0.00 0.00 0.00 0.00 0.00 0.00 4.68 0.00 0.00 2.94 0.00 0.00 0.00 17 E4_Aa NovelBoundary 0 6.74 5.99 13.42 15.85 8.23 2.90 23.89 6.49 19.65 6.88 0.00 5.55 13.15 2.47 4.45 3.25 3.93 2.57 0.00 11.51 3.15 3.12 3.84 18 ER4a ExonRegion 0 18.91 17.24 11.90 29.88 17.18 49.59 26.80 27.10 39.77 29.51 25.02 7.84 30.75 27.93 27.05 0.00 17.46 1.46 1.81 25.39 43.00 8.24 26.56 19 E4_Da NovelBoundary 0 23.93 27.36 41.72 75.15 50.85 90.91 59.66 76.69 75.23 97.62 24.64 26.41 41.88 35.08 33.75 0.00 42.17 12.60 20.33 62.00 51.21 19.41 75.63 20 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 I4 Intron 0 20.66 28.09 28.74 54.09 33.94 61.01 28.13 41.06 56.11 55.84 20.53 24.39 44.74 31.35 37.64 3.36 32.67 12.33 11.63 38.72 41.69 17.85 38.23 22 I4_AR1 ActiveIntronRegion 0 28.78 44.79 38.60 78.97 49.44 85.66 43.06 62.08 86.80 83.37 36.28 28.65 52.05 38.12 53.34 3.51 43.44 17.93 19.31 53.48 72.27 28.65 57.75 23 I4_SR1 SilentIntronRegion 0 13.71 23.05 0.00 0.00 36.82 57.90 18.22 0.00 0.00 0.00 4.69 34.22 57.62 22.74 19.20 0.00 13.36 0.00 0.00 13.78 16.06 8.43 26.15 24 I4_SR2 SilentIntronRegion 0 16.10 14.81 27.79 45.37 21.23 43.34 17.79 32.11 41.72 44.83 9.39 21.23 40.56 29.30 29.18 4.31 29.39 10.41 7.22 33.05 19.27 10.46 24.72 25 E5_Aa NovelBoundary 0 69.49 43.87 37.93 83.94 47.37 53.95 43.41 79.27 91.35 85.29 17.16 6.30 18.83 49.91 61.07 3.76 38.80 13.22 0.00 48.13 42.44 33.68 24.76 26 ER5a ExonRegion 0 0.69 3.73 11.42 22.55 5.97 11.87 1.71 22.77 24.86 33.14 4.93 4.33 3.00 3.42 2.79 2.09 2.85 2.31 0.00 7.35 7.92 3.17 5.14 27 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER6a ExonRegion 0 4.85 2.55 12.98 15.17 8.39 4.72 6.19 14.77 12.75 15.06 4.75 6.11 1.65 2.15 5.41 1.86 7.17 7.55 0.00 13.79 8.83 1.36 7.06 29 E6_Da NovelBoundary 0 6.74 9.67 6.56 21.94 26.49 13.80 25.39 4.19 12.36 15.07 0.00 0.00 6.82 9.83 21.39 3.67 0.00 18.90 3.67 14.70 23.04 0.00 7.26 30 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 Ix Intron 0 7.74 7.08 9.43 11.90 7.29 6.60 11.06 6.28 9.82 11.10 3.48 7.30 11.67 2.97 8.04 1.90 9.38 5.39 4.25 16.30 10.61 1.81 9.54 32 Ix_SR1 SilentIntronRegion 0 7.75 7.09 9.44 11.92 7.30 6.60 11.07 6.28 9.84 11.12 3.48 7.31 11.68 2.98 8.05 1.90 9.40 5.39 4.26 16.31 10.62 1.82 9.55 33 E7_Aa NovelBoundary 0 36.38 27.50 34.65 57.20 11.71 9.71 37.32 10.27 18.14 27.24 7.11 0.00 0.00 0.00 25.96 3.67 8.51 9.87 0.00 14.64 2.90 11.27 7.85 34 ER7a ExonRegion 0 5.20 9.43 15.94 10.49 11.70 7.48 8.67 11.95 12.00 13.91 4.65 4.93 6.19 2.85 8.05 1.62 11.74 4.76 4.34 11.08 11.36 5.66 11.21