Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP4-728D4.1 Gene 0 3.56 0.91 1.18 3.32 3.18 2.81 1.57 1.79 6.11 3.05 3.35 2.01 5.08 26.10 15.33 12.95 6.70 1.73 1.42 2.84 2.40 2.06 3.49 2 444348 Transcript 0 2.66 0.29 0.63 1.66 3.24 0.88 0.68 0.81 3.63 1.49 3.34 1.00 2.58 29.56 15.73 10.24 7.90 0.93 0.30 1.69 0.92 2.76 2.60 3 425881 Transcript 0 1.62 0.59 0.20 1.21 0.96 2.16 0.64 1.24 2.31 1.32 0.00 0.42 1.20 5.51 4.88 3.29 0.96 0.27 0.62 0.97 1.06 0.40 1.70 4 ER1a ExonRegion 0 2.84 0.25 2.51 3.32 1.87 1.83 1.32 1.29 5.36 2.35 2.60 1.84 4.97 29.01 17.75 13.73 7.71 2.07 1.19 2.92 3.03 2.58 3.76 5 E1a_E2a KnownJunction 0 3.26 0.00 0.00 0.00 7.30 0.00 0.00 0.00 3.12 0.00 5.16 0.00 0.00 42.62 13.35 11.11 14.31 0.00 0.00 0.00 0.00 6.25 3.67 6 Ix_AR1 ActiveIntronRegion 0 1.71 1.38 2.94 8.40 2.85 6.89 1.10 5.87 15.32 6.29 0.64 4.59 1.62 2.48 2.30 3.28 0.00 6.63 2.56 3.32 7.83 2.10 5.74 7 ER2a ExonRegion 0 4.55 0.92 0.00 3.34 3.79 1.69 1.39 1.93 6.03 3.61 5.59 2.16 5.35 32.06 18.22 16.11 9.59 1.67 0.00 3.85 0.66 2.22 2.99 8 E2_Da NovelBoundary 0 3.41 3.29 1.48 1.93 0.00 5.00 0.00 6.53 9.64 1.67 0.00 0.00 0.00 4.59 10.26 7.18 12.16 2.28 4.52 3.20 3.15 0.00 0.00 9 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.54 13.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 Ix Intron 0 0.00 1.16 0.52 5.79 1.52 1.57 0.00 2.20 7.34 4.87 1.10 1.02 2.20 14.75 6.52 11.04 2.82 1.57 2.72 2.42 3.77 2.37 5.02 11 Ix_AR1 ActiveIntronRegion 0 0.00 1.17 0.53 5.85 1.54 1.59 0.00 2.23 7.42 4.92 1.11 1.03 2.23 14.92 6.59 11.17 2.85 1.59 2.75 2.45 3.81 2.40 5.08 12 E3_Aa NovelBoundary 0 0.00 0.00 0.00 5.93 3.48 11.07 0.00 3.94 11.43 7.09 2.21 0.00 0.00 19.19 4.45 4.36 0.00 2.45 0.00 0.00 9.45 6.25 4.01 13 ER3a ExonRegion 0 0.61 1.77 0.00 2.94 1.55 3.72 1.92 3.73 6.93 3.96 0.00 1.25 3.60 15.72 5.93 6.89 2.87 0.80 1.85 1.85 3.19 1.20 5.11 14 E3_Da NovelBoundary 0 0.00 0.00 0.00 7.23 0.00 2.67 0.00 2.55 16.70 4.86 2.68 0.00 0.00 14.48 18.54 7.95 4.77 0.00 0.00 5.94 8.96 0.00 10.59 15 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 I3 Intron 0 15.43 3.62 3.84 11.43 11.34 14.72 3.57 12.59 29.29 12.87 6.19 8.48 9.84 27.39 15.19 23.69 7.73 7.68 5.66 5.74 8.62 5.43 8.18 17 I3_AR1 ActiveIntronRegion 0 15.45 3.62 3.85 11.45 11.35 14.74 3.57 12.61 29.32 12.88 6.19 8.49 9.85 27.42 15.21 23.72 7.74 7.68 5.67 5.74 8.63 5.44 8.19 18 E4_Aa NovelBoundary 0 34.97 5.39 1.54 8.32 8.66 2.78 2.25 10.72 13.69 2.53 0.00 12.15 6.33 10.18 6.30 4.36 0.00 0.00 4.80 0.00 0.00 6.06 10.16 19 ER4a ExonRegion 0 8.10 1.98 1.76 3.93 9.07 8.75 2.57 0.00 8.00 2.44 4.69 3.46 7.24 13.41 12.49 10.05 0.00 2.18 6.19 1.01 4.32 1.01 1.43 20 ER4b ExonRegion 0 4.23 0.00 0.61 0.68 1.34 2.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 8.70 2.97 0.00 0.00 0.00 1.06 0.00 0.00 0.00 21 IG10 Intergenic 0 2.84 2.48 1.04 5.86 2.72 6.41 3.55 5.55 18.27 4.59 0.94 3.44 2.51 3.04 2.54 5.56 1.88 2.28 6.35 4.67 5.11 1.02 4.18 22 IG10_SR2 SilentIntergenicRegion 0 3.33 3.61 1.62 5.66 2.26 6.98 3.62 7.82 21.41 5.75 0.41 4.55 4.49 4.09 2.49 4.46 2.12 2.00 6.09 4.44 4.83 0.88 4.71 23 IG10_AR1 ActiveIntergenicRegion 0 2.50 2.42 1.40 6.95 2.67 7.29 3.11 5.66 21.04 4.58 0.96 2.74 0.64 2.72 2.23 10.27 3.25 1.43 4.17 6.10 4.47 1.04 3.81