Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	RP5-864K19.1	Gene	0	1.66	0.74	2.57	1.59	4.89	5.84	2.91	4.30	7.59	4.55	3.73	2.91	2.06	5.59	6.95	6.21	2.93	1.53	2.99	1.89	6.09	3.05	8.12
2	433671	Transcript	0	1.97	0.78	1.26	0.62	4.68	5.99	3.83	2.96	6.94	3.82	1.37	2.38	1.24	3.69	4.79	6.18	2.19	1.92	2.81	1.00	4.10	3.26	7.98
3	456813	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	443161	Transcript	0	1.09	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.04	0.00	0.00	0.00	0.00	0.00	0.00
5	IG14_SR1	SilentIntergenicRegion	0	0.00	3.15	0.67	0.52	6.69	5.93	3.38	0.00	0.60	1.90	2.64	1.30	0.00	7.69	11.50	11.36	4.31	0.00	2.14	1.28	1.45	2.20	4.01
6	IG14_AR1	ActiveIntergenicRegion	0	0.00	5.81	0.00	1.36	13.00	8.91	6.43	0.00	1.24	5.73	1.93	0.00	0.00	11.14	8.29	9.34	5.66	0.00	3.19	3.65	3.15	1.49	13.84
7	ER1a	ExonRegion	0	4.86	0.00	1.14	2.63	6.08	8.01	2.29	7.24	10.62	7.66	6.40	4.74	5.30	9.20	18.72	15.71	7.15	6.16	9.71	1.87	9.71	6.20	14.79
8	E1_Ab	KnownBoundary	0	3.26	0.00	3.67	7.76	17.83	4.88	1.77	20.13	20.89	17.46	27.22	12.60	6.66	9.95	18.67	38.79	17.20	2.28	17.32	8.88	21.93	11.39	22.19
9	ER1b	ExonRegion	0	2.23	1.99	10.63	7.22	12.13	12.94	7.43	15.87	16.82	10.29	14.27	13.35	7.52	20.40	24.21	16.73	6.94	4.71	10.39	7.34	20.82	7.56	17.22
10	E1_Da	NovelBoundary	0	0.00	6.12	11.74	7.03	0.00	5.68	1.85	17.17	14.21	7.39	5.11	0.00	0.00	4.83	24.11	7.69	4.77	4.85	9.22	9.33	8.96	2.63	15.45
11	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	4.16	8.92	0.00	4.31	4.34	1.26	10.37	0.00	0.00	2.24	9.64	0.00	0.00	0.00	0.00	0.00	2.53	0.00	7.85
12	I1	Intron	0	5.27	5.51	7.88	7.30	7.25	9.84	9.74	10.69	17.61	8.79	11.76	16.26	17.14	20.62	16.72	19.07	12.96	8.18	11.98	8.00	16.08	4.49	14.45
13	I1_SR1	SilentIntronRegion	0	5.29	5.53	7.90	7.32	7.28	9.87	9.77	10.72	17.67	8.82	11.80	16.31	17.19	20.67	16.77	19.12	13.01	8.21	12.01	8.03	16.14	4.51	14.50
14	Ix	Intron	0	9.98	8.72	6.82	13.06	14.74	8.08	12.49	12.93	14.54	8.79	2.37	12.44	12.31	3.54	9.79	6.37	3.23	2.31	3.71	7.69	1.89	3.95	9.89
15	Ix_AR1	ActiveIntronRegion	0	8.02	13.74	13.04	24.16	19.08	5.12	13.41	20.46	17.21	14.24	3.03	18.84	18.70	5.61	17.56	5.17	1.72	1.35	1.66	6.80	1.15	6.67	8.81
16	Ix_SR1	SilentIntronRegion	0	11.08	6.01	3.46	7.06	12.44	9.73	12.03	8.88	13.14	5.86	2.02	9.00	8.88	2.42	5.60	7.04	4.07	2.84	4.83	8.20	2.29	2.49	10.52
17	Ix	Intron	0	21.42	7.41	9.61	8.22	21.66	9.65	10.72	8.86	14.90	8.65	2.74	7.11	24.51	6.13	14.37	18.65	10.02	1.67	8.37	6.46	7.14	2.95	14.86
18	Ix_SR1	SilentIntronRegion	0	21.59	7.47	9.69	8.29	21.83	9.73	10.80	8.93	15.02	8.72	2.76	7.17	24.71	6.18	14.48	18.78	10.10	1.69	8.43	6.51	7.19	2.98	14.98
19	Ix	Intron	0	15.52	8.72	10.10	11.23	21.12	7.92	14.80	20.79	20.57	15.56	2.86	13.74	13.41	6.27	12.51	10.37	7.32	2.77	8.57	8.37	5.67	4.07	15.19
20	Ix_SR1	SilentIntronRegion	0	15.51	8.23	6.95	7.15	16.51	5.04	10.59	11.67	11.54	8.65	2.52	10.80	11.20	5.81	10.83	7.45	4.61	1.73	4.91	5.74	4.24	2.81	11.18
21	Ix_AR1	ActiveIntronRegion	0	15.58	9.51	15.13	17.76	28.52	12.52	21.52	35.36	35.01	26.61	3.41	18.46	16.96	7.02	15.22	15.04	11.64	4.44	14.41	12.56	7.94	6.07	21.62
22	Ix	Intron	0	2.36	2.27	8.14	4.53	4.97	4.31	8.19	11.16	12.31	12.69	1.67	5.83	2.39	6.30	13.06	19.13	6.54	3.75	4.73	4.21	10.37	1.81	14.18
23	Ix_AR1	ActiveIntronRegion	0	2.37	2.28	8.17	4.55	4.99	4.33	8.23	11.21	12.36	12.76	1.68	5.86	2.40	6.33	13.12	19.22	6.57	3.77	4.75	4.23	10.42	1.81	14.25
24	E2_Aa	NovelBoundary	0	3.78	0.00	1.39	0.00	7.47	5.34	5.74	4.27	1.79	7.33	2.05	0.00	13.31	2.35	0.00	3.33	9.35	6.05	0.00	3.26	12.36	0.00	7.43
25	ER2a	ExonRegion	0	0.17	0.00	0.00	0.00	0.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.55	0.00	0.12	0.00	0.00	0.00	0.00	0.00	0.00
26	E2_Da	NovelBoundary	0	0.00	0.00	3.61	0.00	8.49	5.79	4.50	1.97	4.48	3.33	5.37	0.00	0.00	0.00	4.45	4.02	0.00	1.70	4.80	0.00	24.03	0.00	4.35
27	E2a_E3a	KnownJunction	0	3.11	0.00	0.00	0.00	3.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER3a	ExonRegion	0	1.17	0.00	1.05	0.51	1.92	2.66	0.68	2.57	3.83	0.31	6.22	0.00	0.00	0.83	8.22	0.15	1.95	0.12	0.00	0.03	2.66	0.43	9.15
29	E3_Da	KnownBoundary	0	0.00	0.00	9.11	4.06	0.00	0.00	11.92	3.74	5.18	1.13	5.11	0.00	6.17	0.00	8.90	4.02	0.00	2.07	0.00	0.00	2.78	2.51	0.00
30	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	4.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.88	0.00
31	ER3b	ExonRegion	0	0.52	0.00	0.59	0.31	0.65	1.36	0.00	0.00	1.15	0.00	1.45	0.00	0.96	0.33	1.18	1.47	0.82	0.00	0.00	0.00	1.09	1.03	0.73
32	E3_Db	NovelBoundary	0	0.00	0.00	0.00	1.93	3.99	0.00	5.74	4.60	6.71	3.28	0.00	0.00	0.00	2.30	0.00	3.76	0.00	0.00	8.47	0.00	6.30	0.00	11.61
33	E3_Dc	NovelBoundary	0	6.45	0.00	0.00	9.12	8.40	0.00	2.25	6.74	15.57	4.24	5.37	0.00	0.00	0.00	11.37	3.25	0.00	6.01	0.00	0.00	0.00	2.88	9.82
34	ER3c	ExonRegion	0	0.00	0.00	0.00	0.00	1.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	I3	Intron	0	5.42	3.00	5.74	10.01	13.55	9.44	11.12	12.05	15.73	7.61	0.43	6.88	10.02	2.69	6.99	6.53	1.47	2.07	3.72	3.97	3.49	3.07	12.66
36	I3_SR1	SilentIntronRegion	0	6.21	2.92	6.04	10.82	14.27	10.53	11.53	11.39	14.44	6.72	0.43	7.36	9.75	3.01	7.86	5.74	1.21	1.92	3.29	4.03	2.84	2.83	11.66
37	I3_AR2	ActiveIntronRegion	0	3.36	2.61	5.32	8.74	13.99	6.68	10.38	15.75	23.15	12.22	0.56	5.29	11.89	1.94	5.08	10.39	2.88	2.88	5.44	4.23	6.65	4.52	19.00
38	Ix	Intron	0	4.66	4.48	7.35	5.49	11.61	8.65	9.99	11.02	15.63	10.10	0.97	6.53	5.43	1.77	6.85	5.79	1.87	2.26	3.61	4.15	4.02	3.01	14.22
39	Ix_SR1	SilentIntronRegion	0	4.86	4.58	7.56	5.53	12.06	8.92	10.39	11.18	16.15	10.35	1.00	6.82	5.67	1.85	6.75	5.93	1.95	2.31	3.76	4.16	4.12	3.09	14.63
40	Ix	Intron	0	8.66	3.98	7.19	4.33	15.83	13.35	9.78	16.37	28.46	14.17	1.53	8.05	9.03	3.27	7.55	10.33	4.43	6.39	5.67	5.80	12.69	3.85	25.96
41	Ix_SR1	SilentIntronRegion	0	8.65	3.91	7.97	4.63	17.45	14.09	10.33	17.90	31.52	15.40	1.51	8.97	9.20	3.53	8.25	11.02	4.74	7.31	6.25	5.88	14.14	4.26	27.94
42	Ix_AR1	ActiveIntronRegion	0	9.50	4.79	2.98	2.88	7.14	9.99	7.29	8.30	11.90	7.76	1.82	2.99	8.86	1.90	3.91	6.93	2.87	1.19	2.59	5.87	4.80	1.66	16.01
43	Ix	Intron	0	3.15	1.63	6.19	4.50	10.77	8.68	8.12	12.91	19.00	10.00	0.50	2.66	1.54	2.37	5.01	4.43	2.34	3.29	3.56	1.94	6.04	2.95	13.68
44	Ix_SR1	SilentIntronRegion	0	3.00	1.50	4.45	3.68	10.46	8.21	7.43	7.15	14.50	4.55	0.22	3.03	1.80	2.19	5.30	3.03	2.24	0.94	1.99	2.89	3.24	2.13	10.32
45	Ix_AR3	ActiveIntronRegion	0	3.05	1.90	7.43	5.76	9.97	10.49	9.14	16.58	23.93	15.78	0.57	2.36	1.31	3.13	6.15	6.92	3.08	6.34	4.59	2.16	8.21	3.80	19.16
46	Ix_SR3	SilentIntronRegion	0	4.40	1.78	8.59	4.45	16.69	7.43	9.56	19.17	21.75	9.16	1.06	3.68	1.78	1.17	3.32	1.95	1.45	1.11	5.23	0.23	7.24	3.19	10.93
47	Ix	Intron	0	4.32	0.83	4.47	2.49	10.92	7.73	8.46	9.11	14.52	6.04	0.00	0.97	2.96	1.78	1.16	3.23	0.90	2.25	2.17	0.58	4.50	2.83	16.77
48	Ix_SR1	SilentIntronRegion	0	4.33	0.83	4.48	2.49	10.95	7.75	8.48	9.13	14.56	6.06	0.00	0.97	2.96	1.78	1.16	3.24	0.90	2.25	2.17	0.58	4.51	2.84	16.82
49	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	34.21	2.84	15.06	7.48	5.79	1.29	0.00	6.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.20	0.00	0.00	0.00
50	ER4a	ExonRegion	0	3.53	3.46	2.16	0.00	13.65	17.83	7.03	2.92	5.81	2.85	0.00	0.00	0.00	5.18	5.16	11.79	0.00	0.47	3.61	1.18	2.94	4.38	18.47
51	E4_Da	NovelBoundary	0	19.11	32.56	33.41	24.94	14.60	11.75	18.72	21.85	25.23	20.33	17.53	36.46	18.02	25.66	34.86	56.99	50.12	33.87	11.67	19.24	32.80	17.64	71.71
52	E4a_E5a	KnownJunction	0	0.00	0.00	1.36	0.00	0.00	0.00	1.81	1.68	5.56	0.00	0.00	5.55	0.00	0.00	0.00	0.00	0.00	2.11	0.00	0.00	2.53	0.00	0.00
53	Ix	Intron	0	0.68	0.44	3.91	1.74	8.89	2.75	4.96	7.18	12.82	3.11	0.00	1.15	0.41	3.00	4.11	6.69	1.06	0.99	2.73	0.91	4.72	0.89	13.21
54	Ix_SR1	SilentIntronRegion	0	0.68	0.44	3.91	1.74	8.89	2.75	4.96	7.18	12.82	3.11	0.00	1.15	0.41	3.00	4.11	6.69	1.06	0.99	2.73	0.91	4.72	0.89	13.21
55	Ix	Intron	0	5.38	2.66	4.51	5.83	13.32	10.26	7.41	16.28	25.81	13.59	0.98	4.44	2.86	3.36	6.61	8.10	2.28	7.37	7.64	1.93	12.17	3.10	20.16
56	Ix_AR1	ActiveIntronRegion	0	9.20	1.91	7.06	2.60	5.48	3.27	6.16	10.35	20.08	12.25	0.96	8.14	0.00	3.00	4.48	10.69	4.52	11.90	7.29	2.08	17.36	3.57	14.13
57	Ix_SR1	SilentIntronRegion	0	5.34	3.07	4.46	6.49	15.15	12.07	7.56	17.08	27.04	13.39	1.17	4.38	3.02	3.57	6.59	8.11	1.75	6.45	7.90	2.17	10.38	3.06	20.95
58	Ix_AR2	ActiveIntronRegion	0	2.78	1.05	2.90	4.76	9.52	5.91	7.62	16.66	23.81	15.82	0.00	2.00	4.21	2.49	8.42	6.16	3.42	8.95	6.55	0.55	17.92	3.04	20.69
59	E5_Aa	NovelBoundary	0	3.19	6.38	3.19	5.86	0.00	13.69	7.38	10.51	30.96	23.40	2.32	6.15	0.00	12.24	9.77	8.63	0.00	6.63	12.71	3.00	13.78	2.82	23.90
60	ER5a	ExonRegion	0	1.45	0.47	1.62	0.46	3.67	4.13	3.60	2.95	12.74	8.59	0.44	1.63	0.88	4.05	0.07	3.40	3.77	0.86	0.73	1.95	5.34	2.86	6.65