Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZDHHC18 Gene 0 46.73 19.07 43.65 35.67 50.08 114.51 44.85 90.32 97.15 113.65 149.02 43.84 54.73 131.89 141.44 99.05 143.84 38.94 32.39 25.58 67.90 58.15 52.81 2 374142 Transcript 0 0.29 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.84 8.40 0.00 8.51 3.40 4.47 0.01 6.18 0.00 2.28 0.00 5.53 0.17 0.60 3 374141 Transcript 0 19.90 6.91 6.13 1.09 11.24 16.14 11.12 3.46 2.96 2.75 11.60 1.73 8.44 16.24 13.35 4.76 3.96 1.11 0.00 0.43 6.17 2.92 0.00 4 488397 Transcript 0 0.55 2.19 2.57 2.89 1.50 29.84 1.53 38.79 45.06 18.87 1.21 0.00 0.58 0.38 0.54 0.45 0.93 3.35 1.24 3.54 0.58 1.70 0.00 5 478902 Transcript 0 22.06 4.80 7.73 10.58 16.73 37.06 12.82 23.65 29.08 20.34 22.03 5.29 15.28 29.40 22.00 38.53 26.22 17.16 8.70 7.53 8.45 20.77 15.80 6 ER1a ExonRegion 0 0.29 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.84 8.40 0.00 8.51 3.40 4.47 0.01 6.18 0.00 2.28 0.00 5.53 0.17 0.60 7 E1_Ab KnownBoundary 0 3.63 0.00 2.51 1.73 0.00 2.33 2.16 5.79 12.38 16.98 48.59 0.00 19.80 11.07 52.04 3.25 41.14 0.00 8.00 2.36 2.53 2.57 0.00 8 ER1b ExonRegion 1 3.12 1.63 9.67 4.87 7.91 30.61 6.17 40.60 48.39 60.16 83.26 18.90 55.32 75.54 79.92 46.65 103.48 16.01 12.48 16.80 44.82 21.83 40.12 9 E1a_E2a KnownJunction 1 0.00 6.51 32.85 20.71 30.39 88.07 19.70 150.66 155.84 182.66 219.79 30.31 132.30 161.16 133.38 93.65 185.32 59.40 56.10 52.67 115.83 36.31 103.97 10 ER2a ExonRegion 0 6.74 9.54 36.53 23.35 18.15 86.25 19.02 135.72 152.08 158.92 197.26 54.78 130.07 160.89 152.58 110.08 195.35 49.66 39.89 33.59 95.48 49.75 57.29 11 E2_Da NovelBoundary 0 6.22 0.00 8.40 5.19 0.00 5.11 1.90 9.45 13.14 12.33 2.26 0.00 12.50 0.00 4.45 0.00 9.54 11.61 3.95 5.56 0.00 0.00 19.80 12 E2a_E3a KnownJunction 0 7.56 9.47 62.80 43.82 23.34 154.57 19.83 172.26 189.64 207.16 221.27 96.48 245.76 239.33 258.73 215.24 248.53 62.51 55.34 61.36 152.28 112.55 145.71 13 E3_Aa NovelBoundary 0 3.63 0.00 9.79 0.00 13.84 4.32 10.69 18.73 21.21 17.81 7.84 6.30 6.82 0.00 25.47 8.72 0.00 21.10 12.14 2.81 0.00 3.12 8.71 14 ER3a ExonRegion 0 24.66 21.38 55.93 49.02 59.31 138.84 36.56 183.70 214.80 201.99 237.49 83.18 179.16 205.93 206.72 147.97 260.75 75.86 48.06 52.13 114.97 95.02 83.99 15 E3a_E4a KnownJunction 0 44.08 15.00 71.02 52.67 89.90 168.88 55.20 214.32 235.01 201.49 227.37 140.30 144.15 179.59 189.75 164.14 287.98 78.18 42.35 53.37 121.95 79.11 61.72 16 ER4a ExonRegion 0 45.74 22.24 57.59 58.91 78.20 200.12 62.10 237.44 261.07 216.97 234.97 107.75 124.51 209.83 192.42 157.14 275.52 77.99 51.38 40.39 152.84 101.29 72.00 17 E4_Ab KnownBoundary 0 37.27 29.99 64.34 80.81 109.93 285.35 81.75 286.53 295.57 243.61 340.93 132.64 175.80 260.41 218.43 216.18 319.40 111.80 110.69 44.87 158.52 139.73 128.56 18 ER4b ExonRegion 0 19.88 24.80 57.72 70.44 76.33 298.26 54.20 217.58 260.22 216.89 320.28 85.28 155.08 263.21 225.42 180.40 279.66 103.08 64.76 52.60 131.96 115.50 104.60 19 E4_Da NovelBoundary 1 0.00 3.35 0.00 1.76 3.48 0.00 1.81 2.14 1.62 12.11 4.79 0.00 25.81 0.00 8.90 0.00 4.49 5.06 0.00 3.26 0.00 0.00 4.35 20 E4a_E5a KnownJunction 1 21.71 20.72 63.78 72.12 79.37 268.88 46.11 223.36 253.44 202.35 251.85 38.86 120.77 236.27 216.70 163.97 267.69 100.94 73.41 23.52 114.78 135.14 83.40 21 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER5a ExonRegion 0 13.04 22.37 53.72 57.16 58.81 224.70 36.69 257.89 262.15 208.25 241.77 85.26 167.41 222.47 240.15 158.31 246.56 103.32 76.51 41.99 129.66 115.74 98.53 23 E5a_E6a KnownJunction 0 20.67 12.43 45.06 57.77 63.92 251.62 50.83 294.21 263.05 208.15 263.38 123.94 143.17 255.46 294.58 231.22 204.21 115.74 91.77 54.07 130.23 161.23 130.26 24 ER6a ExonRegion 0 26.57 18.10 63.06 66.13 71.28 202.18 65.99 276.23 297.24 233.82 317.67 102.23 132.69 255.24 208.66 195.18 275.96 97.68 87.58 43.21 128.59 89.73 101.07 25 E6_Da NovelBoundary 0 9.19 2.76 1.39 3.50 0.00 5.74 2.08 8.50 13.02 19.90 0.00 6.30 6.49 4.94 8.90 16.24 22.44 24.42 13.46 11.89 3.15 3.12 8.11 26 E6a_E7a KnownJunction 0 24.67 14.93 57.92 88.10 86.08 217.94 70.57 244.88 312.53 213.15 270.70 137.29 219.79 253.28 225.85 128.34 259.09 85.31 77.46 65.20 141.84 69.93 88.27 27 E7_Aa NovelBoundary 0 0.00 0.00 5.17 6.53 11.88 0.00 3.97 7.35 18.98 16.09 5.16 0.00 15.10 14.24 9.89 16.41 4.21 14.80 0.00 5.37 5.37 5.94 10.84 28 ER7a ExonRegion 0 40.93 26.53 67.07 61.63 50.89 230.31 56.17 255.44 258.10 238.99 210.93 95.13 142.69 220.77 227.14 168.07 220.08 65.29 60.01 44.47 99.56 85.59 84.72 29 E7_Da KnownBoundary 0 16.74 0.00 7.48 3.50 7.05 19.08 1.90 20.82 21.79 6.80 9.69 0.00 14.45 25.43 10.75 8.72 12.44 10.65 8.09 5.56 5.44 3.06 4.35 30 E7a_E8a KnownJunction 0 32.82 31.70 72.20 58.17 55.09 223.17 66.16 267.47 241.87 245.60 203.37 137.14 120.12 198.48 182.46 158.25 253.39 99.12 34.54 45.89 123.93 60.07 68.97 31 ER7b ExonRegion 0 22.06 4.80 7.73 10.58 16.73 37.06 12.82 23.65 29.08 20.34 22.03 5.29 15.28 29.40 22.00 38.53 26.22 17.16 8.70 7.53 8.45 20.77 15.80 32 E7_Db NovelBoundary 0 17.19 3.09 15.08 7.49 3.48 24.59 12.06 23.45 42.88 21.73 34.27 24.46 15.10 26.43 14.71 32.21 17.30 6.14 17.41 5.11 8.65 16.66 4.10 33 I7 Intron 0 19.32 4.84 11.96 8.87 13.54 36.21 10.90 25.81 35.98 18.99 21.86 16.10 10.48 29.22 20.57 27.13 22.60 15.31 9.80 5.70 10.06 13.44 11.95 34 I7_SR1 SilentIntronRegion 0 30.67 7.33 11.70 7.28 17.00 38.95 11.82 30.42 36.85 15.30 24.95 9.14 10.75 31.03 23.55 27.32 24.62 17.45 10.70 6.96 9.57 17.56 15.77 35 I7_AR1 ActiveIntronRegion 0 12.29 3.30 12.20 9.93 11.44 34.70 10.39 23.07 35.66 21.44 20.06 20.57 10.38 28.26 18.83 27.18 21.47 14.06 9.29 4.94 10.43 10.92 9.61 36 E8_Aa NovelBoundary 0 17.78 8.95 5.80 12.05 7.72 45.71 11.92 50.73 54.77 29.76 22.16 31.06 6.82 26.31 17.80 18.20 46.47 19.65 30.02 16.04 16.93 9.80 8.37 37 ER8a ExonRegion 0 43.11 23.33 78.52 54.54 75.08 218.77 41.73 181.75 230.00 190.40 204.89 68.10 97.46 185.83 168.50 166.80 253.61 68.44 46.09 53.64 114.28 63.92 94.62 38 E8_Da KnownBoundary 1 33.56 27.03 81.64 58.80 37.44 83.76 36.57 85.72 123.32 149.30 180.20 68.27 18.67 162.34 133.38 109.37 192.43 70.14 37.65 49.66 92.79 74.09 73.84 39 E8a_E9a KnownJunction 0 0.00 2.43 1.33 3.83 0.00 27.65 2.16 63.25 87.41 34.06 2.68 0.00 0.00 0.00 0.00 0.00 0.00 6.43 0.00 6.26 0.00 2.63 0.00 40 E8a_E10a NovelJunction 0 0.00 3.09 1.09 1.27 0.00 63.03 6.14 78.04 64.93 21.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 2.49 5.00 0.00 0.00 41 ER8b ExonRegion 0 73.94 26.65 56.52 43.55 67.80 127.03 64.25 72.93 73.33 119.25 169.79 46.15 34.88 150.01 174.50 111.55 155.02 37.32 34.77 26.31 73.81 69.56 58.41 42 E8_Db NovelBoundary 0 45.19 22.96 5.91 2.46 41.85 68.14 36.52 10.56 29.43 27.59 14.37 0.00 6.01 38.97 9.15 6.32 17.39 2.57 0.00 7.61 2.97 6.80 12.98 43 E8_Dc NovelBoundary 0 2.96 0.00 5.77 3.20 28.61 80.18 2.25 28.38 30.93 12.65 9.42 0.00 0.00 0.00 0.00 6.92 0.00 2.57 0.00 2.68 9.20 10.47 3.84 44 ER8c ExonRegion 0 19.90 6.91 6.13 1.09 11.24 16.14 11.12 3.46 2.96 2.75 11.60 1.73 8.44 16.24 13.35 4.76 3.96 1.11 0.00 0.43 6.17 2.92 0.00 45 I8 Intron 0 4.84 7.76 4.58 7.52 10.21 57.36 6.93 37.61 34.90 41.16 7.58 0.39 2.53 2.48 4.56 5.51 2.88 8.51 3.47 7.19 4.08 7.04 5.76 46 I8_SR1 SilentIntronRegion 0 4.88 7.86 4.64 7.62 10.33 58.03 7.01 38.09 35.33 41.67 7.68 0.39 2.56 2.49 4.60 5.58 2.92 8.62 3.52 7.26 4.13 7.13 5.84 47 E9_Aa NovelBoundary 0 7.04 2.76 9.67 4.99 4.24 76.04 9.58 54.14 39.76 38.31 7.42 0.00 0.00 4.77 4.45 0.00 8.88 4.39 0.00 14.25 2.35 2.69 0.00 48 ER9a ExonRegion 0 2.77 5.48 3.39 5.82 3.50 57.84 2.66 55.62 74.46 31.39 1.93 0.00 0.00 0.92 2.68 0.00 2.12 7.60 0.41 9.85 2.88 2.03 0.00 49 E9_Da NovelBoundary 0 6.59 6.51 19.34 10.99 0.00 43.61 10.42 29.12 39.58 46.39 7.16 6.30 0.00 4.71 0.00 8.63 3.65 19.65 3.95 11.76 0.00 11.70 14.85 50 E9a_E10a KnownJunction 0 0.00 0.00 5.26 3.43 0.00 16.75 2.25 54.63 46.70 20.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 3.86 0.00 0.00 2.69 0.00 51 I9 Intron 0 5.50 4.34 4.91 6.59 6.45 46.08 5.16 26.75 32.59 27.89 3.41 0.66 0.36 2.94 5.33 6.89 4.59 4.26 4.43 4.54 5.10 2.51 7.08 52 I9_SR1 SilentIntronRegion 0 1.07 5.13 4.61 3.08 8.11 38.89 5.35 18.21 14.87 12.93 4.88 1.80 0.00 1.93 3.27 6.00 3.33 1.39 1.61 6.45 2.23 0.00 2.97 53 I9_AR2 ActiveIntronRegion 0 6.73 4.31 5.02 7.63 6.30 48.95 5.30 29.68 37.76 32.25 3.09 0.42 0.45 3.23 6.01 7.34 4.93 5.03 5.25 4.16 5.84 3.14 8.16 54 E10_Aa NovelBoundary 0 0.00 3.35 11.89 6.59 7.81 60.31 1.72 26.00 28.24 41.42 0.00 0.00 0.00 2.47 0.00 0.00 17.77 5.14 0.00 5.62 5.75 0.00 4.35 55 ER10a ExonRegion 0 0.00 3.05 2.88 1.38 4.01 46.95 0.56 20.44 16.73 7.89 1.45 0.00 2.90 1.00 0.00 2.23 2.52 0.57 1.92 1.60 0.00 1.16 0.00 56 IG3 Intergenic 0 1.92 1.12 2.07 2.18 3.82 17.71 1.49 22.25 23.20 10.93 1.55 0.30 0.48 0.90 0.46 0.99 1.31 1.26 0.77 1.14 1.15 0.80 1.35 57 IG3_AR1 ActiveIntergenicRegion 0 7.13 5.85 10.91 11.37 14.38 97.72 5.11 113.05 122.03 59.75 5.39 0.00 1.75 2.80 0.77 4.05 5.00 4.17 3.37 5.47 5.33 3.15 5.78