Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PHACTR4 Gene 0 96.08 65.15 70.39 78.12 121.25 85.66 124.53 114.32 85.87 153.19 108.00 96.71 150.62 140.32 152.78 130.15 136.10 96.57 79.28 72.40 52.00 73.94 75.64 2 373839 Transcript 0 9.79 2.47 0.58 1.23 4.93 6.71 8.80 2.11 0.35 2.62 4.03 0.17 0.00 4.52 7.60 3.48 6.60 0.77 1.20 1.65 2.70 1.27 6.48 3 463428 Transcript 0 39.96 40.30 26.79 34.33 31.35 25.72 52.30 33.33 35.04 35.56 16.43 30.13 34.12 26.93 50.87 44.46 41.26 53.94 24.03 51.61 30.39 17.42 51.13 4 493669 Transcript 1 2.47 6.95 9.13 13.04 11.16 21.90 12.41 18.80 11.15 48.57 41.39 3.13 5.34 26.22 8.21 6.42 6.17 25.37 7.87 39.37 14.48 4.76 5.65 5 373837 Transcript 1 115.87 142.47 194.20 358.90 82.94 66.38 138.58 95.21 124.36 167.05 5.16 31.81 113.47 11.54 22.37 66.99 23.38 65.08 34.92 115.63 45.28 20.51 19.46 6 373836 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 373838 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 373835 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 15.36 3.58 1.16 0.18 9.86 13.43 16.27 4.21 0.70 4.47 8.06 0.35 0.00 9.05 11.33 6.96 13.20 1.54 2.39 3.31 5.40 2.54 12.97 10 E1_Ab KnownBoundary 0 9.93 2.83 1.80 2.03 16.30 23.17 29.59 2.55 0.00 5.64 10.11 0.00 0.00 7.06 8.90 10.85 12.44 4.27 3.58 9.33 5.93 3.06 14.08 11 E1_Ac KnownBoundary 0 51.79 14.93 8.49 4.16 40.32 61.84 103.69 16.76 12.96 21.33 19.11 6.30 0.00 8.77 19.66 42.13 73.96 23.55 24.66 12.46 16.87 8.39 47.04 12 ER1b ExonRegion 0 51.64 16.68 6.62 2.73 57.26 65.28 116.77 12.10 11.12 22.48 28.61 4.33 4.69 22.74 40.62 44.58 82.52 10.72 28.03 22.98 21.16 8.33 47.57 13 ER1c ExonRegion 0 41.15 25.31 14.01 7.57 49.58 61.33 110.30 15.68 20.69 32.09 35.58 6.63 11.00 25.60 38.97 34.20 71.48 15.58 29.53 22.77 22.61 12.40 29.04 14 E1a_E2a KnownJunction 0 48.16 30.52 17.12 16.78 38.12 63.77 63.02 18.28 36.89 43.54 41.43 6.30 19.32 47.97 37.46 27.94 58.91 38.63 72.85 25.38 20.02 10.59 28.17 15 I1_AR1 ActiveIntronRegion 0 7.90 8.41 9.05 15.72 24.86 4.36 22.97 6.24 6.23 9.05 0.77 3.07 10.24 1.31 7.36 4.55 7.38 2.50 6.54 9.61 1.98 0.63 7.05 16 ER2a ExonRegion 1 13.44 12.88 18.93 20.70 25.37 25.78 26.06 21.32 26.58 53.50 52.51 16.76 33.61 58.32 33.31 25.98 99.94 21.45 41.53 36.60 29.95 23.77 20.61 17 E2a_E5a KnownJunction 0 3.41 12.30 10.56 8.69 11.97 27.09 6.23 10.76 8.65 53.00 38.75 0.00 12.17 33.85 10.75 11.11 12.62 10.53 11.86 30.87 14.33 8.51 0.00 18 E2a_E6b KnownJunction 1 6.45 2.50 16.32 11.22 0.00 4.54 12.41 8.54 11.83 8.81 33.22 53.87 36.52 61.45 23.49 24.78 141.00 1.66 13.46 2.49 16.12 16.17 21.00 19 I2 Intron 0 13.92 8.67 5.25 9.26 18.06 4.72 26.77 11.43 7.82 11.84 2.76 10.28 17.34 2.05 10.06 11.61 9.71 6.42 5.83 13.96 1.84 1.57 7.39 20 I2_AR2 ActiveIntronRegion 0 61.45 18.05 9.89 27.80 64.00 10.76 39.04 22.09 11.63 23.91 0.87 13.33 25.28 1.23 14.30 9.38 9.93 6.65 6.23 16.96 1.98 0.94 7.51 21 I2_SR2 SilentIntronRegion 0 11.44 8.73 5.40 7.92 15.75 4.02 27.51 10.10 7.84 11.87 2.85 11.27 19.37 2.30 9.69 12.32 10.64 6.56 5.87 14.99 1.96 1.78 8.02 22 ER3a ExonRegion 0 8.72 7.98 7.16 12.65 8.37 2.88 19.22 10.72 5.83 11.16 11.93 8.59 21.65 15.86 27.54 30.09 26.12 12.98 7.50 19.27 3.89 5.74 12.90 23 E3a_E6b KnownJunction 0 0.00 0.00 0.00 1.47 0.00 0.00 0.00 1.77 5.64 5.86 2.68 0.00 0.00 11.65 0.00 3.76 9.16 0.00 0.00 0.00 0.00 0.00 4.35 24 ER4a ExonRegion 0 0.42 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.37 0.34 0.00 0.00 0.00 0.00 0.58 0.89 0.00 0.00 0.00 0.43 0.00 0.00 0.00 25 I4 Intron 0 6.95 4.11 0.92 6.67 25.68 4.17 19.39 9.10 5.57 6.90 2.44 8.17 10.59 1.98 5.34 9.00 5.83 4.87 2.41 5.37 2.76 5.26 8.17 26 I4_SR1 SilentIntronRegion 0 6.98 4.13 0.93 6.70 25.81 4.19 19.48 9.14 5.60 6.94 2.45 8.21 10.64 1.99 5.37 9.05 5.86 4.89 2.42 5.40 2.77 5.29 8.21 27 E5a_E6b KnownJunction 0 4.00 3.62 6.95 17.98 12.73 18.91 20.23 27.48 14.26 40.88 47.33 6.30 0.00 22.07 4.45 3.59 0.00 39.59 4.71 52.28 19.83 2.57 12.55 28 ER5a ExonRegion 0 0.00 4.94 9.89 12.46 8.79 19.71 10.78 18.15 10.54 51.82 38.11 3.09 3.85 22.74 9.43 4.56 5.89 26.00 7.05 34.95 9.29 3.20 4.40 29 ER6a ExonRegion 0 3.17 1.53 5.51 7.84 4.01 4.58 10.92 8.64 9.88 22.65 17.40 11.91 7.04 20.30 18.13 11.15 34.66 7.39 4.78 15.43 6.61 5.73 9.54 30 ER6b ExonRegion 0 42.18 35.79 36.65 47.72 72.69 70.83 107.67 82.43 66.61 128.00 144.65 114.77 143.90 161.47 101.69 132.53 172.43 98.81 73.72 71.92 55.37 64.90 63.18 31 E6a_E7a KnownJunction 0 71.72 51.57 35.54 77.35 185.14 240.66 311.44 135.30 96.85 202.08 274.44 137.59 234.40 305.08 138.95 200.46 304.81 101.02 119.53 97.09 95.51 123.32 92.19 32 E6a_E8a NovelJunction 0 3.63 6.71 3.31 3.46 8.15 0.00 1.85 1.77 1.53 1.67 8.00 0.00 0.00 9.01 0.00 4.36 0.00 2.40 3.95 0.00 2.72 8.27 3.84 33 ER7a ExonRegion 0 102.32 40.62 54.95 76.19 118.43 95.72 141.76 134.35 105.64 209.03 204.17 181.89 267.91 246.77 126.90 191.68 225.03 167.32 95.56 95.43 89.32 80.46 99.01 34 E7a_E8a KnownJunction 0 185.44 64.13 59.67 87.63 108.40 54.51 85.50 166.88 148.20 234.18 185.26 240.98 305.17 243.81 131.16 236.18 242.26 222.65 173.56 83.48 65.67 112.42 129.75 35 ER8a ExonRegion 0 86.84 57.68 58.61 81.95 88.07 90.63 137.30 162.01 148.89 241.33 235.86 225.18 385.21 259.20 172.32 254.65 273.15 164.04 136.49 125.98 101.13 133.21 140.92 36 E8a_E9a KnownJunction 0 63.79 66.83 75.99 90.93 140.58 78.08 225.49 201.55 193.89 279.63 226.90 206.47 505.97 308.50 218.80 330.60 335.76 243.17 133.46 189.39 84.20 146.47 198.90 37 E9_Aa NovelBoundary 0 20.08 17.17 3.10 13.29 28.61 21.18 69.82 9.41 7.81 11.71 0.00 6.30 35.55 5.18 9.64 19.91 34.41 8.12 12.14 11.70 3.09 9.25 10.33 38 ER9a ExonRegion 0 66.67 55.58 59.18 69.50 86.99 85.47 149.27 133.54 119.05 233.97 201.02 174.03 398.59 232.95 230.50 218.26 271.06 169.54 112.62 137.31 104.62 110.13 128.51 39 E9_Da KnownBoundary 0 14.60 5.33 3.49 7.49 3.40 7.67 33.30 0.00 3.96 8.52 10.06 18.46 19.64 9.36 22.87 11.02 8.13 8.50 9.60 15.15 5.68 3.12 11.35 40 E9a_E10a KnownJunction 1 49.79 51.83 69.22 71.99 43.63 41.51 89.16 164.21 143.20 239.85 95.45 142.70 389.75 188.06 241.30 245.41 158.39 216.18 151.72 110.07 60.29 84.87 170.56 41 ER9b ExonRegion 0 39.96 40.30 26.79 34.33 31.35 25.72 52.30 33.33 35.04 35.56 16.43 30.13 34.12 26.93 50.87 44.46 41.26 53.94 24.03 51.61 30.39 17.42 51.13 42 I9 Intron 0 21.51 11.86 4.70 13.33 27.60 10.26 30.59 10.77 8.17 10.67 4.14 17.28 24.99 15.33 17.52 8.92 12.74 3.92 3.69 8.08 4.49 13.90 9.01 43 I9_SR1 SilentIntronRegion 0 18.36 11.23 4.39 11.45 24.74 9.66 29.78 9.27 6.71 8.95 3.28 17.82 23.28 14.14 15.94 6.96 11.33 3.22 3.42 7.64 3.72 12.29 6.91 44 I9_AR1 ActiveIntronRegion 0 52.80 18.17 7.81 31.94 56.03 16.29 38.79 25.64 22.67 27.67 12.72 12.16 42.00 27.17 33.20 28.34 26.77 10.88 6.40 12.46 12.12 29.85 29.77 45 E10_Aa NovelBoundary 0 48.53 24.86 30.13 53.11 35.31 30.21 55.56 61.36 39.26 35.51 17.16 38.11 40.91 43.62 63.42 23.75 13.18 47.26 19.11 7.67 19.89 50.58 76.06 46 ER10a ExonRegion 0 102.04 52.74 60.31 69.17 105.64 96.22 135.77 122.23 94.70 189.16 150.03 128.36 226.87 206.85 168.06 168.87 206.05 152.46 102.91 107.78 93.57 90.11 102.57 47 E10a_E11a KnownJunction 0 69.49 22.30 62.36 67.12 160.27 126.80 210.79 107.04 109.98 182.61 143.72 82.38 132.30 208.67 132.89 162.61 151.85 80.96 69.65 109.49 59.99 62.34 65.22 48 ER11a ExonRegion 0 87.97 61.60 85.57 97.77 156.90 126.32 173.29 122.18 114.61 205.91 159.84 162.69 265.00 243.86 203.31 201.22 183.58 139.28 121.03 120.41 60.02 106.53 102.70 49 E11a_E12a KnownJunction 0 138.99 70.25 114.87 90.96 191.17 118.97 175.02 179.62 168.69 309.75 242.11 191.91 292.35 318.21 250.70 264.63 263.95 182.93 161.13 167.97 83.71 130.98 125.65 50 ER12a ExonRegion 0 103.12 70.37 109.87 127.19 194.90 138.07 225.84 181.51 160.52 279.32 217.21 238.35 358.00 272.77 234.59 258.54 270.27 206.05 155.07 135.33 88.58 122.81 134.11 51 E12a_E13a KnownJunction 1 148.69 61.96 116.29 122.23 289.22 204.94 378.87 205.62 200.35 283.02 241.96 330.71 659.70 320.39 352.06 413.82 400.28 211.16 238.03 165.48 106.38 176.05 140.51 52 Ix_AR2 ActiveIntronRegion 0 19.45 8.83 3.69 15.38 29.18 9.82 29.01 12.22 9.29 16.22 1.95 7.23 20.86 2.93 5.88 4.20 2.33 3.99 2.90 4.08 1.78 2.52 2.37 53 E13_Aa NovelBoundary 0 24.82 12.37 7.30 21.91 48.30 14.99 45.18 22.71 8.10 17.84 0.00 0.00 46.26 0.00 20.15 15.38 4.11 2.07 0.00 3.26 3.15 3.06 3.93 54 ER13a ExonRegion 1 94.00 63.91 107.44 119.81 229.35 119.10 238.48 207.63 166.87 270.73 187.15 294.79 483.07 295.44 293.91 279.17 271.97 189.23 138.17 131.84 98.10 137.92 137.24 55 E13a_E14a KnownJunction 0 0.00 0.00 0.00 7.82 7.72 5.11 6.71 5.09 4.86 2.79 2.32 0.00 6.82 4.71 6.30 0.00 9.54 0.00 0.00 0.00 0.00 2.57 0.00 56 E13a_E15a KnownJunction 1 96.46 65.05 120.69 123.29 230.22 104.88 246.83 203.15 120.63 274.18 149.35 313.15 452.73 319.03 326.23 242.16 180.55 156.53 97.79 125.60 63.26 113.10 121.30 57 E13a_E19a NovelJunction 0 0.00 2.57 0.00 7.99 0.00 0.00 2.03 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 12.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 Ix Intron 0 38.42 37.09 9.01 23.25 46.32 16.20 34.50 20.61 17.65 24.81 5.94 11.66 23.96 13.67 17.12 20.46 18.43 8.81 4.74 16.83 3.69 13.76 13.67 59 Ix_AR1 ActiveIntronRegion 0 33.57 26.55 8.19 22.84 55.87 19.27 39.85 19.95 18.14 23.61 4.88 12.34 32.71 12.33 14.46 23.16 19.02 8.82 3.99 15.38 2.70 12.87 14.22 60 Ix_SR1 SilentIntronRegion 0 42.50 45.67 9.71 23.71 39.07 13.89 30.50 21.26 17.37 25.93 6.81 11.20 17.19 14.81 19.33 18.47 18.07 8.86 5.37 18.09 4.50 14.54 13.32 61 E14_Aa NovelBoundary 0 72.90 24.80 44.06 37.06 41.26 11.07 29.06 22.26 20.08 38.60 4.63 6.15 20.45 22.13 18.05 41.70 0.00 4.19 0.00 11.89 5.81 16.72 4.27 62 ER14a ExonRegion 0 33.95 39.56 14.54 23.83 35.16 8.88 38.00 21.94 20.51 22.30 7.16 13.42 21.32 17.06 26.52 20.71 9.38 7.76 8.06 10.23 5.26 15.19 12.28 63 E14_Da NovelBoundary 0 67.05 56.11 16.71 31.10 32.77 5.79 34.62 31.01 9.95 25.01 4.26 11.85 19.80 14.36 17.31 18.29 4.11 8.83 0.00 8.50 10.93 14.57 8.45 64 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 1.79 0.00 0.00 0.00 0.00 7.42 0.00 4.36 4.30 1.91 0.00 3.26 2.66 3.12 0.00 65 Ix Intron 0 34.10 15.27 2.29 6.67 26.79 19.51 21.75 4.84 6.91 11.23 3.02 8.41 12.08 8.16 13.88 9.76 6.20 2.73 2.99 6.32 3.79 7.82 4.59 66 Ix_SR1 SilentIntronRegion 0 34.32 15.36 2.30 6.71 26.96 19.63 21.87 4.87 6.95 11.30 3.04 8.46 12.14 8.20 13.95 9.82 6.24 2.75 3.01 6.36 3.82 7.87 4.62 67 E15_Aa NovelBoundary 0 65.20 17.76 16.06 52.87 78.95 65.13 68.72 51.38 32.55 55.63 9.42 0.00 28.73 19.19 42.90 25.63 17.20 11.48 3.58 8.76 2.35 13.84 3.93 68 ER15a ExonRegion 1 168.13 78.65 120.03 124.46 221.57 135.05 219.65 214.91 142.89 254.83 187.15 308.02 491.09 299.91 298.45 281.11 276.16 177.12 132.14 111.94 80.08 113.85 160.71 69 E15_Da NovelBoundary 0 9.41 5.53 27.67 60.47 66.55 21.52 32.59 42.18 35.82 41.74 4.95 0.00 6.82 7.59 17.06 0.00 9.54 9.08 7.62 12.08 0.00 21.92 24.76 70 E15a_E16a KnownJunction 1 191.07 94.06 114.34 139.31 232.17 171.61 212.51 217.53 148.73 247.24 174.47 323.51 312.32 313.62 399.90 330.17 363.25 200.01 154.08 118.82 81.24 110.16 188.74 71 E16_Aa NovelBoundary 0 63.42 26.57 31.22 41.85 31.92 10.11 15.77 29.24 30.12 50.88 4.32 0.00 6.82 20.25 20.64 7.35 17.58 31.50 8.09 11.95 9.33 8.51 12.63 72 ER16a ExonRegion 0 189.60 112.22 115.42 119.69 182.53 114.11 194.53 173.18 142.41 235.11 168.11 200.79 331.56 244.30 239.42 232.28 254.03 132.34 94.55 89.67 91.71 117.95 113.04 73 E16a_E17a KnownJunction 0 229.37 145.90 105.85 84.90 105.94 160.19 205.75 121.17 99.94 221.99 129.56 112.39 130.51 148.39 207.31 143.72 231.23 93.27 64.00 113.13 54.61 74.15 77.60 74 ER17a ExonRegion 0 323.25 207.79 107.88 106.96 322.38 210.32 316.51 141.76 135.97 252.07 200.95 213.04 387.02 284.41 296.61 231.32 226.65 119.19 120.22 105.61 90.41 130.59 119.41 75 E17a_E18a KnownJunction 0 3.33 0.00 0.00 0.00 0.00 2.90 0.00 0.00 1.79 0.00 0.00 0.00 0.00 4.36 0.00 8.72 0.00 2.57 0.00 0.00 0.00 0.00 0.00 76 E17a_E19a KnownJunction 0 209.07 163.00 79.92 88.00 293.89 211.81 334.09 181.26 147.97 215.92 155.88 118.69 197.71 188.48 215.47 176.28 117.53 134.89 117.84 77.92 96.31 137.65 68.97 77 ER18a ExonRegion 0 15.11 6.71 0.00 2.32 2.50 1.60 11.49 1.41 1.49 1.10 0.06 11.73 20.53 10.57 13.45 4.22 3.12 3.34 5.21 8.28 3.74 0.13 1.71 78 E18a_E19a KnownJunction 0 3.70 0.00 0.00 0.00 4.16 0.00 0.00 0.00 0.00 1.02 0.00 0.00 6.82 2.41 0.00 3.42 4.21 0.00 0.00 0.00 0.00 0.00 0.00 79 ER19a ExonRegion 0 140.79 114.70 110.99 110.94 215.09 127.47 182.40 184.56 127.52 254.93 183.88 165.65 183.07 196.41 235.86 216.60 191.20 149.16 137.42 90.09 80.76 116.29 115.13 80 E19_Da KnownBoundary 0 101.94 48.94 50.89 78.08 58.83 35.60 36.61 58.20 44.50 85.23 51.01 17.26 54.87 20.90 21.76 86.05 57.13 41.12 46.59 21.35 15.81 39.56 27.32 81 E19_Db KnownBoundary 0 191.07 46.70 34.95 33.06 22.67 28.39 42.18 39.35 38.69 73.76 71.44 6.15 28.41 23.49 29.92 39.14 17.30 17.70 17.79 5.82 16.68 30.49 24.24 82 ER19b ExonRegion 0 228.58 109.81 98.03 121.30 115.06 75.19 108.56 110.62 102.51 193.83 185.56 95.25 140.70 201.39 165.37 154.55 122.13 68.37 66.89 51.06 52.89 77.09 64.61 83 ER19c ExonRegion 0 154.13 78.52 74.39 84.53 136.03 85.76 110.87 122.41 84.60 151.41 105.82 94.63 118.14 153.87 137.86 97.94 108.48 52.49 50.62 68.39 44.03 68.70 50.66 84 E19_Dc KnownBoundary 1 1934.79 1881.11 6400.34 5769.66 1645.50 1197.83 1679.73 5482.97 5908.48 4585.12 789.57 281.94 242.84 209.43 596.45 1877.63 1553.81 5370.12 1397.97 1945.58 1154.74 1056.46 1683.28 85 E19c_E19b KnownJunction 1 115.87 142.47 194.20 358.90 82.94 66.38 138.58 95.21 124.36 167.05 5.16 31.81 113.47 11.54 22.37 66.99 23.38 65.08 34.92 115.63 45.28 20.51 19.46 86 ER19d ExonRegion 0 99.34 65.61 79.87 88.74 128.88 90.74 117.17 117.84 85.19 142.42 80.63 67.74 100.77 120.95 143.54 114.18 106.79 88.12 80.79 58.50 39.99 68.60 69.06 87 E19_Ab KnownBoundary 1 1773.28 1443.36 4480.80 4475.65 1370.63 866.38 1683.66 4081.65 3870.53 3764.49 524.98 297.70 303.55 267.23 659.25 1401.77 1189.71 5377.83 1231.66 1618.77 747.75 637.20 1361.46 88 ER19e ExonRegion 0 126.16 87.41 96.52 102.68 160.16 99.98 143.96 139.39 87.33 155.28 92.75 55.92 76.91 108.19 190.84 89.96 104.42 58.77 58.65 63.16 29.63 79.90 53.67 89 E19_Dd KnownBoundary 0 174.85 80.84 31.16 32.60 126.40 31.52 50.96 26.78 9.03 21.38 2.32 0.00 6.33 9.71 19.78 19.23 16.74 5.51 33.70 0.00 0.00 15.61 4.10 90 E19_De KnownBoundary 0 20.08 10.72 24.48 32.70 0.00 5.05 18.20 37.01 16.09 41.31 0.00 7.65 7.63 5.06 11.62 3.59 0.00 0.00 0.00 0.00 0.00 5.39 0.00 91 ER19f ExonRegion 1 137.57 83.38 47.79 64.06 101.68 31.17 58.25 63.95 22.23 55.05 3.87 56.28 51.59 29.23 63.83 23.78 13.20 5.54 25.48 8.51 0.00 31.25 2.94 92 ER19g ExonRegion 1 128.49 58.31 21.44 34.31 47.61 24.88 32.62 35.70 12.82 37.85 3.87 19.03 40.84 15.15 32.21 13.84 2.90 1.18 14.00 3.67 1.94 26.40 3.39 93 ER19h ExonRegion 0 4.23 1.36 0.00 2.27 0.00 0.00 1.32 0.00 0.00 0.76 0.00 0.00 0.00 0.00 3.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00