Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 YTHDF2 Gene 0 166.91 258.97 118.22 117.28 155.58 148.60 140.94 155.54 115.28 217.36 271.75 244.47 152.21 275.23 257.07 242.93 245.79 132.13 90.67 121.12 145.60 166.09 122.28 2 474884 Transcript 0 1.64 1.09 1.41 0.18 0.00 0.67 0.75 0.47 1.43 0.00 0.43 0.00 0.00 1.72 3.45 2.54 2.42 0.34 0.95 0.69 1.21 0.38 0.00 3 373812 Transcript 1 189.00 443.72 92.70 98.53 117.73 58.70 74.42 123.58 73.97 158.72 118.02 215.96 114.08 110.85 230.27 63.72 75.69 15.33 27.86 57.13 26.03 116.78 31.08 4 478283 Transcript 0 10.48 4.33 9.04 6.52 7.96 16.78 12.86 13.01 13.32 14.58 9.74 3.48 9.43 17.35 18.67 18.25 14.99 12.18 11.60 10.12 13.61 7.84 17.55 5 496288 Transcript 0 0.00 2.50 10.82 15.18 3.23 0.00 13.43 4.68 13.89 11.90 9.00 5.70 6.82 9.01 0.00 14.18 8.32 1.99 3.67 8.12 0.00 0.00 9.73 6 401077 Transcript 0 2.65 3.05 1.23 0.34 4.01 2.75 3.97 4.32 0.93 2.58 2.90 4.33 3.52 5.28 10.88 0.00 0.00 0.46 0.00 2.13 7.16 1.04 0.00 7 475796 Transcript 0 3.41 8.88 6.03 0.00 8.66 0.00 7.86 2.55 4.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.68 32.85 22.18 5.87 5.39 4.35 8 476976 Transcript 0 0.93 3.15 1.23 0.00 0.04 4.33 2.11 1.87 3.00 0.09 1.33 0.00 0.07 0.00 0.86 1.02 0.26 0.00 2.39 0.60 1.03 3.54 0.23 9 468863 Transcript 0 2.13 1.28 2.16 2.58 1.64 3.30 4.14 2.52 0.95 1.20 4.32 8.52 8.50 3.67 5.16 0.75 5.28 1.58 5.96 4.29 2.22 3.63 2.66 10 ER1a ExonRegion 0 3.29 2.18 2.83 0.35 0.00 1.35 1.50 0.95 2.85 0.00 0.86 0.00 0.00 3.45 6.91 5.09 4.84 0.68 1.90 1.38 2.43 0.76 0.00 11 E1_Ab KnownBoundary 0 3.11 3.09 2.81 2.06 0.00 0.00 0.00 0.00 4.54 1.37 0.00 0.00 0.00 0.00 15.20 4.19 0.00 0.00 4.80 2.56 0.00 0.00 0.00 12 ER1b ExonRegion 0 1.65 0.16 2.35 1.09 0.00 0.00 1.24 0.00 2.40 1.90 1.55 0.00 0.00 7.05 3.42 1.07 5.88 0.00 1.21 0.98 3.31 0.00 2.23 13 E1_Da KnownBoundary 0 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 1.79 4.73 0.00 0.00 0.00 7.42 0.00 0.00 3.93 2.16 0.00 2.68 3.15 0.00 3.76 14 E1a_E1f KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1c ExonRegion 0 0.38 0.06 0.83 0.01 0.97 2.42 0.23 0.10 1.67 4.16 3.85 0.58 0.00 7.05 9.55 3.25 6.70 2.95 3.46 1.42 5.78 2.11 2.52 16 E1_Ac KnownBoundary 0 0.00 0.00 1.54 0.00 0.00 7.95 0.00 0.00 0.00 9.05 7.95 0.00 0.00 7.59 8.90 4.27 22.63 11.77 0.00 0.00 12.48 9.12 4.35 17 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.27 0.00 0.00 18 E1_Ae KnownBoundary 1 111.13 44.40 12.60 6.83 28.27 154.63 72.43 15.90 12.62 10.31 110.08 0.00 0.00 115.49 28.43 73.66 132.12 74.45 17.13 36.56 66.35 48.13 57.11 19 ER1d ExonRegion 1 43.74 20.20 6.94 4.36 9.10 67.73 28.16 7.26 4.69 11.47 67.01 4.33 0.00 98.31 48.35 36.26 95.51 44.22 8.71 14.33 52.89 28.34 38.37 20 ER1e ExonRegion 1 69.85 30.16 11.85 6.81 29.43 126.53 51.63 12.68 12.56 20.64 110.50 4.33 3.91 202.20 91.87 70.84 135.89 69.60 24.42 24.82 91.45 55.91 58.73 21 ER1f ExonRegion 1 92.71 59.96 15.06 15.17 56.19 182.29 105.41 24.97 24.38 35.30 115.03 5.81 9.07 177.65 111.01 117.48 150.97 92.61 43.80 52.38 97.86 56.91 75.85 22 E1_Af KnownBoundary 0 96.61 96.82 15.14 20.18 80.39 246.34 157.71 33.85 32.90 61.62 85.44 6.45 13.47 97.06 44.87 172.26 142.22 113.75 42.17 68.84 68.51 50.76 86.22 23 ER1g ExonRegion 1 43.37 33.35 20.02 23.22 47.71 80.36 45.93 37.47 36.26 57.35 153.96 42.08 34.00 112.26 86.11 99.57 163.00 58.04 32.49 51.15 125.24 48.92 45.11 24 E1_Db KnownBoundary 0 3.11 0.00 7.89 1.56 0.00 0.00 5.83 4.19 4.80 11.34 16.90 0.00 7.79 7.12 13.23 7.86 25.71 11.94 7.34 6.26 12.17 0.00 8.11 25 E1b_E1g KnownJunction 1 65.42 61.24 30.40 40.65 85.14 90.06 57.41 53.85 60.24 80.08 362.41 69.62 64.93 244.87 189.01 157.91 283.22 58.91 61.37 95.04 198.74 101.59 85.79 26 ER1h ExonRegion 0 10.48 4.33 9.04 6.52 7.96 16.78 12.86 13.01 13.32 14.58 9.74 3.48 9.43 17.35 18.67 18.25 14.99 12.18 11.60 10.12 13.61 7.84 17.55 27 E1c_E3a KnownJunction 0 46.38 41.24 45.53 44.88 42.87 44.46 42.00 147.62 99.91 203.67 371.57 494.71 209.89 534.76 406.95 242.59 420.48 164.28 129.60 190.41 180.45 276.96 162.96 28 ER1i ExonRegion 0 57.15 58.30 53.56 57.41 73.14 75.34 56.54 139.00 111.52 191.06 446.50 246.96 121.35 454.14 302.09 239.01 418.53 165.91 126.75 172.87 230.47 215.90 146.34 29 ER2a ExonRegion 0 2.12 5.17 3.78 0.00 2.40 0.00 5.74 1.40 3.53 0.10 0.97 0.09 0.00 0.07 1.15 2.23 0.00 7.66 15.00 9.88 3.03 4.38 1.90 30 E2_Da KnownBoundary 0 3.78 6.25 5.50 5.49 0.00 0.00 10.64 0.00 4.51 1.50 2.63 0.00 0.00 0.00 9.89 3.93 4.77 6.26 14.31 3.13 5.87 8.57 0.00 31 E2a_E3a KnownJunction 0 3.41 8.88 6.03 0.00 8.66 0.00 7.86 2.55 4.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.68 32.85 22.18 5.87 5.39 4.35 32 ER2b ExonRegion 0 1.85 3.94 2.45 0.00 0.08 2.87 4.22 1.40 2.89 0.18 2.66 0.00 0.15 0.00 1.72 2.04 0.52 0.00 4.78 1.20 2.07 4.82 0.46 33 E2b_E3a KnownJunction 0 0.00 2.37 0.00 0.00 0.00 5.79 0.00 2.34 3.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 34 ER3a ExonRegion 0 55.83 65.88 68.36 80.47 101.90 89.83 108.66 164.54 150.93 239.49 504.73 478.44 291.24 447.27 322.98 402.83 467.66 274.14 185.56 206.86 256.47 290.43 217.85 35 E3_Da NovelBoundary 0 29.41 15.52 38.02 50.48 29.97 67.86 63.06 84.45 76.56 109.27 186.15 111.04 62.50 126.67 73.55 214.39 225.53 117.64 64.00 99.65 130.10 90.44 83.31 36 E3a_E6a KnownJunction 0 0.00 2.50 10.82 15.18 3.23 0.00 13.43 4.68 13.89 11.90 9.00 5.70 6.82 9.01 0.00 14.18 8.32 1.99 3.67 8.12 0.00 0.00 9.73 37 E3b_E5a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.37 31.96 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E3b_E6a KnownJunction 0 35.49 57.49 57.86 75.18 93.80 112.26 78.87 156.57 144.10 225.48 491.44 289.29 157.94 340.87 161.94 347.77 470.78 256.85 60.61 166.95 273.18 152.29 140.17 39 E3b_E8a NovelJunction 0 24.97 2.83 15.02 25.11 6.62 37.42 3.36 26.62 30.15 24.04 11.69 6.30 6.82 15.19 40.79 23.24 44.79 16.21 0.00 12.21 27.06 10.04 4.18 40 ER3b ExonRegion 0 34.80 52.20 63.99 75.72 94.25 103.71 86.50 146.53 137.92 221.35 504.49 314.61 146.95 347.38 186.00 350.71 509.07 263.00 86.71 158.63 282.32 190.06 162.17 41 I3_SR2 SilentIntronRegion 0 9.05 9.02 10.37 20.76 15.87 10.51 31.22 20.45 17.95 9.59 3.08 19.80 12.89 3.21 15.98 12.14 13.97 6.35 6.78 15.86 2.84 7.83 9.67 42 ER4a ExonRegion 0 0.98 1.89 2.54 4.68 3.72 2.55 6.79 5.96 2.56 4.75 2.65 11.34 10.70 1.24 6.80 1.38 9.09 3.83 2.95 7.89 4.05 7.73 5.45 43 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER5a ExonRegion 0 4.19 3.24 6.10 5.62 2.84 5.21 9.76 4.12 1.25 0.04 9.46 16.46 16.46 3.67 9.40 1.61 7.63 2.50 7.80 9.29 1.70 4.17 5.20 45 E5a_E6a KnownJunction 0 3.33 0.00 0.00 0.00 0.00 5.45 0.00 0.00 0.00 0.00 5.16 6.30 6.82 9.77 4.45 0.00 4.39 0.00 13.08 0.00 3.15 2.63 0.00 46 I5_AR1 ActiveIntronRegion 0 13.30 15.64 14.03 37.49 26.57 9.02 36.06 19.40 18.46 16.97 4.91 18.97 16.40 5.53 12.60 8.97 13.01 5.25 10.42 19.55 3.28 5.38 5.12 47 ER6a ExonRegion 0 89.16 94.23 103.04 87.12 140.05 195.48 146.68 177.40 144.83 257.77 507.95 453.63 247.16 456.19 265.36 343.11 480.52 217.01 123.04 185.80 292.15 266.50 187.33 48 E6_Da KnownBoundary 1 158.62 176.68 139.85 114.44 192.36 244.75 231.15 233.63 158.94 309.02 540.19 553.23 308.75 574.20 263.30 510.55 468.16 283.00 146.92 212.21 265.70 330.72 282.55 49 ER6b ExonRegion 0 127.86 153.11 137.91 142.20 196.54 250.38 213.29 201.13 181.08 327.27 587.27 369.56 266.66 553.16 293.57 538.73 534.30 336.93 197.41 221.19 346.15 307.24 288.07 50 E6_Db KnownBoundary 0 79.57 96.89 74.45 98.69 57.72 114.65 119.86 143.43 121.73 203.94 301.92 118.84 90.58 297.02 237.59 591.98 389.15 169.75 235.21 152.70 207.08 353.99 247.21 51 E6_Dc KnownBoundary 1 48.75 38.68 32.52 38.72 73.09 105.96 89.47 45.72 50.14 101.62 209.42 75.17 34.09 179.53 99.51 225.07 227.86 52.36 119.25 87.25 137.15 185.66 170.90 52 E6_Dd KnownBoundary 1 60.75 79.72 119.63 113.31 110.19 234.35 155.63 142.86 109.49 247.02 467.49 262.14 122.07 312.62 176.77 347.86 405.89 211.58 147.77 197.38 265.21 192.33 179.18 53 ER6c ExonRegion 0 83.43 84.56 162.16 174.34 87.63 170.70 171.67 249.33 202.56 377.43 490.96 267.71 142.66 597.95 357.10 670.96 546.02 311.81 278.45 226.77 329.82 426.95 317.65 54 ER6d ExonRegion 0 70.24 90.88 172.55 181.52 109.71 239.20 178.40 238.09 204.33 404.28 548.22 299.00 154.48 569.36 315.87 559.87 547.54 322.66 249.25 220.34 341.30 371.13 294.58 55 ER6e ExonRegion 0 144.13 140.51 155.92 193.65 183.64 279.68 236.38 219.25 205.03 362.03 552.88 310.50 241.65 488.02 309.34 548.20 524.55 340.22 224.74 218.16 356.49 269.44 249.93 56 E6_De KnownBoundary 0 218.41 157.54 127.02 133.38 183.96 248.89 259.50 186.76 154.19 296.85 411.26 267.54 177.75 438.87 284.44 487.65 436.84 269.41 186.45 226.84 311.48 253.45 248.15 57 ER6f ExonRegion 0 217.91 201.62 191.68 186.11 264.22 277.62 260.70 242.26 181.04 342.17 412.68 265.84 206.52 464.43 373.61 453.76 403.35 259.81 159.52 197.85 260.23 227.76 221.02 58 E6f_E8a KnownJunction 0 677.75 397.56 346.03 298.93 612.90 392.61 348.97 255.77 202.31 380.96 350.46 436.79 382.44 603.92 790.29 444.07 331.09 135.14 131.30 229.97 124.05 216.09 180.80 59 I6_SR1 SilentIntronRegion 0 23.09 5.19 9.60 20.19 11.54 7.88 31.61 11.02 11.84 15.53 4.10 17.22 16.42 1.33 16.82 5.26 8.08 0.69 9.89 10.86 1.35 1.59 10.96 60 ER7a ExonRegion 0 2.65 3.05 1.23 0.34 4.01 2.75 3.97 4.32 0.93 2.58 2.90 4.33 3.52 5.28 10.88 0.00 0.00 0.46 0.00 2.13 7.16 1.04 0.00 61 I7 Intron 0 15.58 14.47 16.33 24.94 33.39 7.59 36.10 20.02 11.45 19.61 2.28 13.51 13.02 1.54 18.77 10.44 10.75 4.41 7.39 10.87 2.13 2.68 8.11 62 I7_AR1 ActiveIntronRegion 0 12.51 5.75 12.13 23.34 29.60 4.18 47.14 16.52 11.23 16.95 4.35 26.52 30.97 1.08 20.67 8.46 9.22 2.51 14.81 9.41 2.84 4.97 6.53 63 I7_AR2 ActiveIntronRegion 0 13.25 6.56 18.12 22.67 30.31 9.26 38.70 25.53 17.36 22.48 5.73 29.65 28.22 2.74 14.51 15.81 19.03 6.02 11.35 13.11 5.94 4.29 13.84 64 I7_AR3 ActiveIntronRegion 0 17.54 12.98 30.05 28.39 11.40 7.51 36.19 19.88 20.00 17.80 5.34 17.42 18.31 2.36 18.58 25.90 21.14 4.75 12.82 9.12 5.14 9.13 11.61 65 I7_SR1 SilentIntronRegion 0 11.21 16.61 17.42 26.55 35.65 8.15 38.18 19.66 14.70 23.50 3.61 19.94 14.75 2.62 21.99 16.61 12.93 5.29 8.36 14.54 2.50 4.26 11.24 66 I7_AR5 ActiveIntronRegion 0 23.44 36.32 23.28 28.66 43.26 10.59 44.92 24.23 15.57 28.22 2.51 16.37 16.97 1.24 23.40 9.29 10.90 6.98 4.79 15.09 3.22 3.73 6.93 67 I7_SR2 SilentIntronRegion 0 13.49 10.06 14.32 22.60 26.77 6.29 31.72 21.04 10.71 20.75 1.38 8.85 9.42 1.37 19.71 10.83 13.80 5.68 6.81 9.16 1.71 2.15 8.74 68 I7_SR3 SilentIntronRegion 0 9.50 4.05 13.73 26.52 15.17 4.74 20.51 12.91 9.09 15.26 1.33 10.39 7.52 0.74 18.66 9.56 6.76 1.68 7.12 5.96 0.25 0.85 5.83 69 I7_AR6 ActiveIntronRegion 0 16.03 8.15 6.51 10.40 40.52 6.33 36.26 12.04 4.51 8.18 1.94 4.45 10.72 1.23 11.67 4.63 6.62 1.74 3.19 9.71 1.72 1.39 6.54 70 I7_SR4 SilentIntronRegion 0 23.54 21.43 22.05 33.14 44.05 10.20 42.82 26.57 11.45 20.39 1.56 13.85 12.96 1.24 17.08 6.52 7.97 4.24 8.86 10.90 2.26 2.13 6.02 71 I7_AR1 ActiveIntronRegion 0 18.61 29.54 14.95 29.88 35.63 11.27 50.72 29.27 17.16 29.77 3.03 18.95 28.40 2.13 16.96 13.03 13.97 4.19 8.44 19.15 1.26 3.44 9.79 72 I7_SR2 SilentIntronRegion 0 15.44 11.29 7.29 13.17 26.37 6.20 34.50 15.79 12.98 20.78 2.65 14.58 19.28 1.92 11.82 13.28 14.69 6.33 11.48 15.07 3.99 2.08 12.09 73 I7_AR2 ActiveIntronRegion 0 10.86 9.71 12.26 22.93 40.26 8.00 44.92 17.31 10.91 24.60 1.74 15.02 21.02 1.65 14.44 16.29 11.73 6.52 6.23 17.20 2.00 0.31 10.89 74 ER8a ExonRegion 0 467.55 668.18 275.40 238.69 322.23 222.75 229.28 271.61 204.06 368.37 406.19 597.09 254.79 399.02 486.66 313.16 313.79 75.50 105.70 192.59 119.45 253.71 140.29 75 E8_Da KnownBoundary 1 235.08 541.68 49.41 37.42 180.65 64.05 144.15 77.63 40.39 76.40 58.70 188.46 102.10 135.91 144.88 74.68 51.15 9.45 16.75 77.79 16.99 81.75 30.90 76 ER8b ExonRegion 1 377.63 887.38 184.57 197.05 234.50 114.99 148.61 247.05 146.27 313.27 232.18 431.33 228.16 214.65 450.99 124.19 144.69 27.72 52.25 112.84 46.27 231.44 59.65