Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZMYM1 Gene 0 34.86 30.63 17.58 31.65 68.43 51.94 52.35 44.87 45.37 46.63 15.88 21.47 13.55 16.00 7.52 11.36 7.77 13.56 12.82 23.01 20.98 36.95 26.35 2 417119 Transcript 0 0.00 0.11 0.21 0.23 0.24 0.21 0.15 0.29 0.62 0.39 0.11 1.02 0.00 0.08 0.12 0.00 0.19 0.00 0.36 0.00 0.12 0.12 0.00 3 359858 Transcript 0 0.00 1.27 0.00 0.00 2.34 4.58 2.57 0.11 0.77 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.39 0.00 4 466390 Transcript 0 75.55 27.45 6.37 8.22 57.67 43.23 51.56 27.28 17.22 17.08 7.70 22.77 4.19 7.63 8.03 8.70 2.83 13.22 22.13 10.87 14.01 13.65 28.21 5 488455 Transcript 0 1.74 0.00 0.00 0.98 3.74 2.90 5.10 0.00 0.72 2.94 1.29 3.30 0.00 1.15 0.00 3.67 2.29 4.29 0.00 0.00 1.42 0.00 2.18 6 475654 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 373329 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 373330 Transcript 0 0.53 0.00 0.00 0.00 0.00 3.21 0.00 0.43 0.00 0.43 0.00 0.00 0.00 1.02 1.45 1.49 0.00 0.00 0.40 0.80 0.00 0.00 0.00 9 476269 Transcript 0 5.91 3.65 0.33 0.05 2.32 3.69 5.39 8.96 1.79 2.88 1.56 4.44 1.32 0.85 0.92 2.68 3.62 0.16 9.91 7.91 1.42 2.46 2.15 10 463393 Transcript 0 6.87 13.62 1.09 4.55 10.10 5.50 9.37 4.70 9.11 7.05 0.40 2.04 5.31 1.32 0.11 0.11 0.06 0.24 0.30 0.12 0.58 8.37 0.17 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 0.00 0.46 0.82 0.92 0.00 0.83 0.60 1.16 2.49 1.57 0.44 4.08 0.00 0.30 0.46 0.00 0.74 0.01 1.44 0.00 0.50 0.47 0.00 14 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E3_Ad NovelBoundary 0 0.00 3.22 0.00 2.06 4.33 10.90 13.34 6.20 7.67 8.84 0.00 0.00 0.00 0.00 0.00 0.00 3.83 0.00 0.00 0.00 8.71 2.57 0.00 16 ER3a ExonRegion 0 0.00 1.27 0.00 0.00 2.34 4.58 2.57 0.11 0.77 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.39 0.00 17 ER3b ExonRegion 0 0.00 2.03 0.00 0.00 2.68 5.50 7.94 1.73 1.24 2.29 0.48 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 2.60 0.00 18 ER3c ExonRegion 0 0.00 2.03 0.00 2.45 8.56 10.27 10.33 1.73 1.24 6.42 5.03 0.00 0.00 0.65 0.00 0.00 3.30 3.70 0.00 2.13 0.00 4.17 2.35 19 ER3d ExonRegion 0 43.33 27.03 0.00 7.30 32.32 42.86 50.39 11.93 4.99 23.12 13.83 0.00 0.00 8.31 0.23 11.95 7.90 24.35 12.05 16.23 43.38 19.90 44.63 20 E3_Da NovelBoundary 0 3.48 0.00 0.00 4.06 28.27 13.34 20.45 4.56 5.90 1.02 4.84 0.00 0.00 0.00 0.00 0.00 0.00 20.19 0.00 5.56 0.00 2.88 3.93 21 E3a_E4b KnownJunction 0 3.48 0.00 0.00 0.00 3.82 5.79 10.20 0.00 1.45 5.88 2.58 6.60 0.00 0.00 0.00 7.35 4.58 8.58 0.00 0.00 2.84 0.00 4.35 22 E3a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E3a_E5a KnownJunction 0 33.41 14.54 0.00 9.16 3.90 5.51 20.40 14.54 6.19 24.28 7.79 0.00 0.00 0.00 0.00 4.02 0.00 9.41 8.09 18.15 32.00 13.47 23.30 24 E3a_E6a KnownJunction 0 3.48 2.57 0.00 5.26 23.26 34.81 29.46 6.41 3.59 9.83 7.90 0.00 0.00 0.00 0.00 7.86 4.68 17.33 0.00 5.69 17.67 0.00 3.93 25 E4_Aa NovelBoundary 0 6.22 3.35 6.95 0.00 11.80 6.76 11.04 16.06 6.51 6.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.72 0.00 24.16 3.15 4.71 8.11 26 ER4a ExonRegion 0 5.91 3.65 0.33 0.05 2.32 3.69 5.39 8.96 1.79 2.88 1.56 4.44 1.32 0.85 0.92 2.68 3.62 0.16 9.91 7.91 1.42 2.46 2.15 27 E4_Ab KnownBoundary 0 75.79 108.53 193.19 182.29 99.49 90.35 168.04 191.12 285.44 207.75 43.75 13.65 32.63 23.07 30.78 67.85 68.63 162.00 92.52 178.14 48.12 27.00 103.46 28 ER4b ExonRegion 0 11.13 8.90 3.08 4.59 3.91 6.34 9.32 6.05 9.31 7.39 4.86 19.19 14.01 9.11 25.29 12.37 8.92 10.29 11.92 17.94 4.88 4.39 16.83 29 E4_Ac KnownBoundary 0 418.00 487.08 202.03 227.34 320.20 272.80 360.99 236.22 173.18 161.28 223.74 148.70 155.67 55.51 185.55 486.54 355.31 325.91 344.67 438.02 184.22 158.35 323.70 30 ER4c ExonRegion 0 13.10 17.13 1.72 5.89 11.10 4.10 16.99 11.88 10.06 10.22 8.51 17.69 10.08 11.61 7.90 26.88 28.09 11.72 12.33 15.03 15.57 5.01 13.31 31 E4_Da NovelBoundary 0 10.30 20.46 8.43 20.51 22.24 7.55 35.15 18.77 16.49 14.45 21.48 12.90 0.00 2.88 4.33 26.83 33.47 19.36 34.54 32.60 24.96 7.96 30.05 32 E4a_E5a KnownJunction 0 10.30 0.00 1.83 4.86 7.98 0.00 15.15 11.46 15.05 12.52 10.00 0.00 0.00 2.47 10.51 3.25 3.55 16.75 4.24 11.06 29.96 0.00 23.22 33 E5_Aa NovelBoundary 0 0.00 0.00 1.83 4.20 3.99 0.00 21.90 5.46 6.11 9.08 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.93 0.00 3.06 7.51 34 ER5a ExonRegion 0 25.75 6.67 5.64 10.39 20.43 16.26 16.32 22.31 22.26 27.51 13.89 15.42 2.15 14.52 9.61 21.02 8.56 28.00 13.47 21.32 37.12 13.91 35.03 35 E5_Da KnownBoundary 0 10.37 3.16 18.27 11.39 27.93 38.44 10.47 21.44 39.26 37.53 19.69 19.21 13.64 24.90 14.71 44.43 22.53 14.59 18.73 22.95 47.51 2.45 27.06 36 E5a_E6a KnownJunction 0 0.00 0.00 0.00 1.93 0.00 0.00 4.15 0.00 1.79 2.98 0.00 12.30 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 3.15 0.00 0.00 37 ER5b ExonRegion 0 29.77 12.20 12.73 16.35 29.11 17.82 33.24 24.81 27.89 29.68 18.78 36.57 3.68 15.03 12.35 28.20 12.49 22.30 19.54 23.98 49.43 8.45 33.49 38 E5b_E6a KnownJunction 0 6.82 15.72 9.82 14.78 36.33 40.60 87.80 17.58 21.96 24.82 2.53 23.11 6.82 14.83 4.45 15.81 8.70 35.57 13.18 18.79 33.30 17.70 47.21 39 ER6a ExonRegion 0 9.80 19.11 6.73 16.22 76.17 73.30 87.58 31.89 32.65 38.41 24.73 17.20 10.28 13.17 6.92 24.79 11.76 42.52 22.52 31.89 49.60 29.74 41.88 40 E6a_E7a KnownJunction 0 13.34 12.04 10.41 13.55 111.55 99.54 91.28 36.35 40.16 38.87 37.06 20.26 26.46 16.78 13.23 27.00 27.12 30.47 20.42 32.47 39.35 37.29 31.41 41 E7_Aa NovelBoundary 0 3.70 2.57 3.22 4.13 36.67 18.23 21.86 10.35 5.87 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.20 0.00 5.45 12.29 42 ER7a ExonRegion 0 15.29 23.30 14.53 29.55 50.11 37.07 46.67 64.48 61.98 58.57 36.34 33.14 9.15 22.44 11.28 28.07 10.82 44.60 33.78 33.61 61.38 44.13 59.37 43 E7_Da KnownBoundary 0 56.97 23.22 7.16 29.40 71.90 70.36 69.16 45.47 64.61 38.71 63.17 47.87 6.66 26.43 19.41 52.21 9.26 39.96 23.25 44.10 62.33 70.97 59.75 44 ER7b ExonRegion 0 73.55 31.61 22.47 33.10 84.07 72.10 83.73 64.01 66.05 51.18 34.44 24.80 16.26 19.80 18.36 32.05 10.09 47.33 31.93 29.30 44.02 39.82 62.97 45 E7_Db NovelBoundary 0 354.14 118.73 20.40 31.43 252.12 176.21 231.46 96.20 61.54 52.54 41.69 63.62 15.10 39.67 32.88 41.95 9.54 45.52 85.37 44.74 43.49 64.30 118.40 46 E7b_E8b KnownJunction 0 0.00 9.08 10.14 7.16 16.04 10.39 20.76 6.24 17.01 8.95 14.27 0.00 0.00 11.83 0.00 0.00 4.30 10.74 4.80 2.68 16.99 12.68 15.28 47 E7b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 E7_Dc NovelBoundary 0 0.00 9.54 6.09 5.23 4.16 2.90 7.95 21.81 10.36 16.25 5.37 12.30 15.10 9.83 6.30 4.36 0.00 15.88 21.84 9.46 5.56 23.39 17.33 49 ER7c ExonRegion 0 151.10 54.91 12.74 14.50 115.34 86.45 98.97 54.57 32.64 31.17 15.39 33.24 8.38 15.26 16.06 17.41 5.66 24.75 44.25 21.73 24.87 27.31 56.43 50 I7 Intron 0 16.09 12.74 6.50 10.37 27.76 16.66 26.86 20.53 13.35 17.77 7.41 9.49 9.53 7.22 3.76 6.66 3.81 7.14 8.97 11.95 7.74 10.26 12.89 51 I7_SR1 SilentIntronRegion 0 16.18 9.97 5.55 10.29 25.76 13.99 29.95 14.24 10.63 12.45 5.52 12.61 11.23 6.77 3.63 4.16 3.14 3.06 4.98 10.64 5.15 8.83 6.72 52 I7_AR1 ActiveIntronRegion 0 14.82 12.68 10.66 8.78 31.25 15.24 21.88 22.22 18.77 18.66 9.33 20.04 15.91 10.45 2.15 7.29 5.79 6.29 6.83 12.26 12.13 4.68 12.56 53 I7_SR2 SilentIntronRegion 0 16.16 14.73 6.85 10.57 28.96 18.69 25.09 24.92 14.89 21.53 8.63 6.45 7.84 7.30 3.99 8.40 4.14 10.12 12.00 12.87 9.25 11.73 17.34 54 E8_Aa NovelBoundary 0 33.86 23.15 1.63 13.65 23.51 5.79 6.09 17.58 25.35 15.88 0.00 0.00 0.00 7.18 0.00 3.85 0.00 6.26 0.00 5.82 5.56 19.04 0.00 55 ER8a ExonRegion 0 6.87 13.62 1.09 4.55 10.10 5.50 9.37 4.70 9.11 7.05 0.40 2.04 5.31 1.32 0.11 0.11 0.06 0.24 0.30 0.12 0.58 8.37 0.17 56 E8_Ab KnownBoundary 0 21.19 25.78 6.27 12.19 28.44 15.84 20.45 12.94 23.47 15.69 0.00 6.30 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.19 0.00 57 ER8b ExonRegion 0 18.32 22.99 7.30 20.85 31.71 38.93 46.12 26.64 44.98 36.48 23.21 15.68 11.35 18.16 8.14 14.13 5.12 20.56 13.69 28.12 25.17 40.05 30.31 58 E8a_E9a KnownJunction 0 19.71 6.12 6.74 21.54 39.30 34.70 23.72 20.13 47.13 53.00 17.21 18.91 19.80 21.96 8.90 7.09 4.68 19.32 9.04 23.39 38.98 35.03 34.23 59 ER9a ExonRegion 0 23.04 17.51 7.40 22.60 43.47 36.72 34.70 26.98 47.03 52.19 24.96 27.77 14.27 20.72 9.23 18.18 11.03 26.28 14.81 35.72 38.86 41.58 31.09 60 E9a_E10a KnownJunction 0 57.71 15.19 7.60 30.63 61.12 63.03 41.51 21.77 55.70 49.88 19.43 24.91 33.60 27.14 0.00 11.79 8.70 11.57 7.53 19.49 39.72 50.58 55.32 61 ER10a ExonRegion 0 25.60 11.24 6.99 18.41 58.28 46.70 45.63 21.36 36.93 40.61 20.03 30.25 12.06 19.65 7.72 16.81 9.97 22.01 8.81 27.69 35.70 36.07 30.24 62 E10a_E11a KnownJunction 0 16.45 3.03 5.59 20.01 19.69 10.28 37.94 23.78 25.32 39.92 20.01 5.85 13.64 17.78 0.00 15.30 8.23 2.53 0.00 17.07 20.32 31.96 23.65 63 E10a_E11b KnownJunction 0 0.00 0.00 0.00 1.96 3.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 E11_Ab NovelBoundary 0 12.97 3.09 4.91 11.22 4.16 6.47 17.58 13.31 16.41 24.23 6.00 11.55 0.00 2.18 0.00 3.33 3.65 2.45 0.00 7.48 4.57 9.43 9.90 65 ER11a ExonRegion 0 15.66 2.03 6.13 16.63 18.73 14.67 32.83 24.89 26.68 39.45 24.35 17.32 9.38 20.46 0.00 9.51 8.58 2.22 3.19 12.77 16.75 32.92 26.43 66 ER11b ExonRegion 0 19.05 2.03 6.13 17.72 18.73 16.50 31.78 24.20 28.41 40.14 23.19 8.66 9.38 19.49 2.90 11.89 6.60 1.85 3.19 12.77 15.43 29.17 23.49 67 ER11c ExonRegion 0 24.50 21.79 6.02 22.31 52.82 33.30 41.50 31.25 36.84 35.85 28.46 29.24 18.80 26.16 8.24 15.27 8.23 13.47 12.72 31.29 40.12 29.09 37.05 68 E11c_E12a KnownJunction 0 20.15 8.68 3.37 26.24 76.06 54.74 34.71 20.13 31.86 37.53 30.43 18.76 6.82 21.48 10.01 23.33 12.90 13.89 38.02 30.10 50.53 31.78 38.84 69 ER11d ExonRegion 0 15.24 8.54 4.66 32.16 71.17 52.45 30.72 24.20 42.24 39.68 36.73 20.78 9.38 19.81 9.28 20.80 11.88 17.74 28.67 30.21 63.47 30.42 41.11 70 ER12a ExonRegion 0 10.53 16.45 7.91 31.16 53.45 54.64 42.46 22.71 43.48 46.06 31.67 16.63 11.09 38.13 9.03 20.67 12.53 13.90 15.28 23.07 49.83 50.76 39.44 71 E12a_E13a KnownJunction 0 13.04 30.98 12.18 34.43 37.27 42.70 44.87 36.35 55.03 55.42 28.80 0.00 26.30 45.21 8.90 12.30 16.74 8.71 4.61 20.20 42.50 61.60 34.32 72 ER13a ExonRegion 0 28.10 29.74 11.08 31.10 63.92 51.86 56.12 43.88 60.45 53.57 25.81 28.28 22.02 24.31 4.50 13.03 6.57 16.48 15.67 32.29 36.91 46.87 42.78 73 E13_Da KnownBoundary 0 85.05 22.43 11.80 35.03 98.64 111.47 57.15 36.80 70.98 56.14 31.85 24.31 6.82 19.90 0.00 17.77 4.39 15.01 25.13 17.45 23.17 57.87 19.21 74 ER13b ExonRegion 0 39.23 42.27 15.13 36.25 95.92 68.73 64.86 52.16 51.78 59.53 14.36 29.46 22.10 19.79 7.17 9.31 8.97 9.39 10.01 27.43 16.20 45.27 25.72 75 E13_Db KnownBoundary 0 90.46 73.87 39.95 58.07 118.08 92.45 118.18 93.77 52.66 84.64 7.37 29.41 12.82 11.83 0.00 7.95 0.00 5.31 13.08 18.73 6.05 59.70 32.18 76 ER13c ExonRegion 0 54.94 43.18 39.70 53.44 93.22 69.80 68.74 70.80 61.09 58.41 13.66 15.93 10.33 13.36 8.42 7.99 6.91 9.04 14.27 19.70 11.93 46.96 22.16 77 ER13d ExonRegion 0 6.35 2.03 0.00 2.73 2.68 7.34 0.00 1.73 0.00 2.29 0.00 4.33 0.00 3.25 5.80 2.97 0.00 0.00 3.19 2.13 2.20 0.00 0.00 78 ER13e ExonRegion 0 1.06 0.00 0.00 0.00 0.00 6.42 0.00 0.86 0.00 0.86 0.00 0.00 0.00 2.03 2.90 2.97 0.00 0.00 0.80 1.60 0.00 0.00 0.00