Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM222 Gene 0 36.75 24.79 46.65 41.54 33.11 56.65 27.68 70.03 52.53 88.28 65.43 15.07 18.69 69.21 98.23 70.51 52.54 48.49 29.33 27.98 65.04 57.90 47.11 2 374070 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 374071 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 374073 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 374076 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 464720 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 466759 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 486082 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 464813 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 478104 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 498220 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 471456 Transcript 0 12.94 3.17 5.18 7.34 12.21 22.21 19.01 20.87 8.71 27.86 17.16 8.59 6.94 26.55 19.28 27.86 11.43 10.99 7.92 8.17 13.29 15.13 12.25 13 470223 Transcript 0 19.36 10.54 23.45 14.25 16.12 24.85 13.54 28.68 15.06 35.39 24.37 3.47 5.06 29.16 33.07 27.30 17.85 11.30 7.39 10.31 7.96 10.43 15.11 14 ER1a ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 1.32 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 15 ER1b ExonRegion 0 4.60 4.77 0.69 0.09 1.17 2.45 3.26 1.49 0.03 3.02 5.07 0.00 0.00 2.52 9.94 13.36 1.97 3.87 0.00 3.91 9.85 4.05 12.15 16 E1_Ac KnownBoundary 0 3.11 0.00 1.77 3.06 4.16 0.00 6.09 1.60 0.00 3.28 4.26 0.00 0.00 0.00 0.00 3.59 0.00 12.77 0.00 0.00 5.62 2.82 0.00 17 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.94 3.12 10.67 18 ER1c ExonRegion 0 3.93 7.84 6.65 3.31 8.79 37.99 17.78 7.16 1.76 14.42 14.08 0.00 0.00 5.34 19.89 20.38 12.73 8.18 2.73 17.02 24.24 6.55 16.36 19 E1_Ae KnownBoundary 0 10.45 18.88 3.67 4.03 8.57 72.69 41.38 7.06 1.79 9.51 23.74 0.00 6.49 0.00 11.87 25.21 23.47 7.09 9.60 30.55 30.83 6.06 21.00 20 E1_Af KnownBoundary 0 7.56 13.42 3.61 11.89 0.00 8.57 24.78 9.82 11.98 24.52 18.53 0.00 0.00 3.00 18.67 17.26 14.31 26.36 9.60 0.00 15.69 3.12 12.80 21 ER1d ExonRegion 1 38.57 44.44 13.57 11.66 21.80 82.72 63.11 17.03 22.96 48.89 51.11 0.00 0.00 32.30 92.95 73.86 70.66 26.69 24.42 34.75 84.97 32.56 74.94 22 E1_Ag KnownBoundary 1 127.65 73.41 30.93 29.53 59.85 163.77 80.51 32.16 43.81 82.52 98.50 0.00 0.00 84.53 120.53 128.00 113.51 106.29 46.50 48.19 88.34 107.10 121.47 23 ER1e ExonRegion 1 78.31 67.62 22.67 17.04 33.45 130.20 84.73 22.47 31.50 64.23 84.08 0.00 0.00 82.83 164.65 121.86 112.23 49.43 38.22 53.19 117.35 64.07 108.66 24 ER1f ExonRegion 1 99.48 84.46 23.28 21.26 46.74 158.07 106.71 31.57 37.05 83.65 105.28 0.00 0.00 103.73 165.56 149.00 141.50 68.61 50.12 57.73 129.87 89.17 125.88 25 ER1g ExonRegion 0 83.47 55.06 30.14 26.16 53.02 180.26 70.68 45.38 61.13 85.22 82.60 8.94 11.96 67.25 77.22 99.71 69.61 54.15 45.05 32.15 80.71 91.26 86.49 26 E1a_E2a KnownJunction 0 0.00 30.46 35.98 25.74 8.15 26.29 8.48 69.09 69.70 72.42 71.39 39.31 20.45 33.43 66.38 37.51 58.34 13.06 0.00 13.74 67.71 30.92 38.33 27 I1_AR2 ActiveIntronRegion 0 9.12 4.97 5.95 7.33 15.27 13.67 10.64 7.50 9.21 13.93 11.93 9.64 11.56 14.34 9.64 14.19 13.84 8.99 9.64 8.67 9.75 7.52 15.74 28 I1 Intron 0 12.19 7.31 5.78 11.31 20.40 15.37 20.91 15.18 10.75 14.97 16.78 11.03 12.67 14.56 12.32 16.15 14.20 7.28 7.32 10.18 7.32 11.10 11.83 29 I1_AR1 ActiveIntronRegion 0 8.57 9.83 2.85 6.92 18.82 10.81 22.19 9.88 8.37 9.95 16.34 9.42 11.44 11.10 6.28 10.76 11.02 8.55 6.33 8.32 4.54 5.77 9.18 30 I1_SR1 SilentIntronRegion 0 14.52 5.81 7.62 14.10 21.51 18.30 20.26 18.56 12.30 18.18 17.15 12.08 13.51 16.80 16.15 19.60 16.26 6.54 7.98 11.41 9.10 14.47 13.56 31 E2_Aa NovelBoundary 0 18.67 0.00 9.22 15.12 29.46 12.38 38.82 23.29 7.90 13.35 5.05 12.60 6.82 13.95 28.68 14.95 13.28 12.97 0.00 11.63 5.56 5.57 7.00 32 ER2a ExonRegion 0 16.51 26.63 55.13 44.43 19.93 36.05 27.52 86.89 76.01 125.31 154.59 30.46 26.15 112.66 139.57 82.76 114.21 69.08 46.28 69.61 180.19 100.89 87.27 33 E2a_E3a KnownJunction 0 10.74 9.34 9.96 16.08 7.89 12.78 1.81 8.95 7.58 42.28 19.53 0.00 0.00 19.07 6.30 15.47 7.85 12.77 7.91 5.62 2.84 2.45 7.60 34 E2a_E4a KnownJunction 1 20.15 22.10 67.71 63.16 43.46 37.42 26.59 89.21 92.50 127.78 142.51 50.27 0.00 163.28 277.89 193.28 125.39 101.69 72.85 87.50 164.14 204.15 189.25 35 ER3a ExonRegion 0 16.95 7.76 17.60 22.61 19.74 28.92 14.75 10.98 10.74 39.57 20.25 2.69 6.71 34.46 37.60 39.08 22.48 17.40 21.96 10.82 13.28 8.69 24.11 36 E3_Da NovelBoundary 0 17.19 0.00 1.80 1.37 8.06 5.17 13.47 15.53 6.80 6.04 9.69 0.00 0.00 9.30 9.89 17.35 0.00 6.76 3.58 0.00 0.00 0.00 4.35 37 E3a_E4a KnownJunction 0 7.56 18.35 13.19 33.56 37.52 51.28 15.50 8.91 7.73 44.81 24.90 6.00 0.00 39.20 38.20 23.16 34.69 13.93 0.00 8.88 14.33 11.14 8.19 38 I3_AR1 ActiveIntronRegion 0 4.83 1.41 6.47 1.75 9.40 5.57 10.93 16.30 6.09 12.57 6.13 3.28 3.83 10.71 10.02 16.96 5.56 4.92 1.34 3.73 3.92 6.42 6.42 39 E4_Aa NovelBoundary 0 7.26 0.00 1.69 1.63 11.29 2.21 17.00 3.53 3.04 10.48 4.79 6.30 6.82 18.78 21.14 0.00 0.00 2.45 0.00 3.26 6.24 3.12 12.21 40 ER4a ExonRegion 1 22.69 33.17 104.12 103.62 65.81 58.51 29.38 126.29 121.20 203.65 186.59 52.63 11.73 196.72 277.34 202.66 135.54 133.96 95.36 87.10 197.03 228.80 166.20 41 E4_Da NovelBoundary 0 23.63 3.35 0.00 0.00 4.33 15.50 12.81 6.45 1.74 10.66 6.95 0.00 0.00 12.07 13.35 15.04 14.03 2.32 9.22 6.07 14.33 3.12 0.00 42 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 7.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 43 E4a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E4a_E5e KnownJunction 0 27.26 27.96 95.92 88.87 60.70 29.59 31.22 114.97 100.78 165.50 170.36 51.17 26.13 201.84 229.06 152.52 81.07 148.90 102.59 72.48 186.75 250.08 178.58 45 E5_Aa NovelBoundary 0 5.85 2.43 6.77 2.93 26.40 19.53 18.28 18.48 6.77 25.36 26.27 0.00 6.01 28.43 4.45 11.79 17.86 1.78 13.27 19.75 0.00 6.25 16.13 46 ER5a ExonRegion 0 12.76 1.69 3.35 5.63 4.28 11.94 9.99 16.91 6.60 19.03 10.29 3.10 3.17 16.45 11.55 16.00 5.73 5.49 0.00 10.14 4.95 8.62 10.80 47 E5_Ab KnownBoundary 0 13.71 9.27 4.73 7.26 11.88 27.82 12.23 12.40 14.26 25.65 25.95 6.30 6.82 19.78 28.56 4.27 8.51 0.00 0.00 31.38 3.15 5.45 7.43 48 E5_Da KnownBoundary 0 25.12 0.00 0.00 2.06 12.31 16.47 11.13 11.62 10.16 21.25 21.95 6.30 13.64 15.25 27.32 22.81 15.71 17.41 0.00 5.43 5.87 20.76 3.50 49 ER5b ExonRegion 0 19.61 4.41 2.98 6.00 16.05 25.43 12.45 12.27 14.24 29.40 26.93 8.37 12.04 17.76 23.21 17.83 9.13 12.63 0.11 19.08 5.44 13.54 5.38 50 ER5c ExonRegion 0 20.11 4.79 3.57 4.82 13.35 18.63 16.03 28.18 9.49 26.98 15.25 5.28 13.56 27.77 14.97 18.88 15.86 9.82 7.89 11.99 6.66 15.32 10.06 51 E5_Db KnownBoundary 0 26.00 2.89 5.20 7.29 19.10 12.04 29.01 30.93 10.56 28.96 10.06 6.30 19.32 30.08 35.73 23.16 17.58 9.87 0.00 12.46 6.12 23.64 15.45 52 ER5d ExonRegion 0 15.01 4.12 6.90 8.01 11.92 17.89 13.70 20.63 9.38 25.70 17.36 6.90 11.44 23.81 19.34 27.57 13.35 15.80 7.83 6.77 12.26 11.63 10.86 53 E5_Ac KnownBoundary 0 11.19 3.35 8.52 24.44 46.94 18.40 23.45 36.51 17.91 55.60 42.38 6.30 12.99 46.85 34.49 43.41 18.33 20.93 4.80 2.49 17.85 14.21 42.43 54 ER5e ExonRegion 0 14.01 7.31 5.38 11.12 21.59 24.90 22.79 23.59 13.00 36.47 16.77 8.25 3.87 26.69 19.29 39.88 12.49 18.63 6.80 1.64 22.99 14.36 27.46 55 E5_Dc KnownBoundary 1 10.59 6.25 1.83 7.46 12.73 51.11 31.84 25.42 8.04 39.54 17.06 12.15 6.82 49.27 10.75 49.65 9.54 9.45 8.75 8.76 26.93 26.02 27.40 56 E5c_E5e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E5_Ad KnownBoundary 0 18.52 0.00 6.83 7.52 16.81 16.52 36.61 17.99 9.81 21.36 24.27 11.40 14.45 29.25 29.79 21.11 13.28 11.15 17.69 11.70 9.08 20.15 4.27 58 ER5f ExonRegion 0 11.04 3.70 5.30 8.37 20.45 36.81 33.34 25.06 10.15 38.87 23.82 15.77 6.20 39.38 26.94 40.02 15.21 11.68 15.93 7.60 22.67 25.15 15.10 59 ER5g ExonRegion 0 16.83 5.10 10.17 7.29 15.71 19.42 17.32 34.12 14.75 28.83 20.32 8.38 16.44 21.36 21.96 31.08 15.27 15.66 6.23 5.21 10.56 10.22 15.33 60 E5_Ae KnownBoundary 0 11.26 2.70 6.15 3.00 19.69 35.49 16.08 18.03 15.74 22.75 9.48 0.00 7.79 23.19 28.06 27.26 15.61 11.65 3.86 12.59 13.04 2.63 4.27 61 ER5h ExonRegion 0 58.53 42.73 111.48 127.91 92.34 140.36 53.84 177.13 140.89 214.34 174.79 60.25 52.13 168.65 240.53 160.46 131.55 126.53 61.95 85.06 173.96 163.79 121.04 62 E5d_E6a KnownJunction 0 62.60 71.37 149.05 157.79 134.64 180.98 71.94 180.56 165.74 267.49 231.74 36.31 34.58 197.42 297.67 141.76 116.97 118.10 83.48 101.76 166.92 150.82 122.15 63 ER6a ExonRegion 0 93.97 84.37 171.37 145.90 76.80 178.21 70.62 226.65 174.81 287.17 237.84 49.74 53.45 192.04 280.82 182.25 173.28 151.78 86.15 95.92 238.62 191.45 119.93 64 E6_Da KnownBoundary 0 27.78 9.14 32.91 18.11 20.80 16.47 13.56 38.90 18.89 30.14 39.48 0.00 12.50 17.01 28.18 44.86 25.06 14.22 20.80 5.82 3.15 17.02 8.37 65 E6a_E6b KnownJunction 0 0.00 5.20 4.85 1.83 0.00 5.11 0.00 3.70 3.21 18.27 7.53 0.00 0.00 9.30 6.30 4.36 4.49 4.10 0.00 5.94 9.45 0.00 4.27 66 E6a_E6c KnownJunction 0 125.58 127.48 148.43 165.28 84.13 126.57 54.06 223.03 188.08 248.61 249.69 43.96 40.42 121.84 230.92 127.74 150.82 157.03 83.20 88.91 245.32 186.58 88.78 67 ER6b ExonRegion 0 18.28 9.35 30.46 14.77 24.87 34.69 18.89 27.81 12.23 46.62 32.16 6.48 11.41 34.00 27.13 40.62 23.20 27.28 15.85 13.26 11.81 11.46 13.02 68 E6_Ab KnownBoundary 0 44.75 18.94 25.72 11.79 19.19 47.02 29.85 34.87 10.21 43.60 35.75 6.30 33.28 33.02 4.45 31.19 22.44 33.58 29.27 14.83 6.30 11.33 8.28 69 ER6c ExonRegion 0 21.02 18.93 30.75 12.17 12.86 39.92 20.41 34.73 17.42 46.10 37.52 3.53 17.68 38.18 34.75 44.48 28.80 28.14 21.68 17.07 20.57 16.28 24.24 70 E6_Db KnownBoundary 0 16.89 18.55 45.06 19.81 26.32 39.18 20.45 36.06 17.82 34.71 15.64 0.00 28.24 38.79 41.91 53.15 13.28 17.41 16.28 18.09 8.77 3.00 33.72 71 E6b_E6c KnownJunction 0 6.22 2.76 1.39 1.56 0.00 0.00 2.12 1.81 11.17 23.88 12.21 6.75 6.82 7.42 13.35 15.30 4.02 4.68 0.00 2.36 0.00 11.82 15.45 72 ER6d ExonRegion 0 28.25 11.94 30.68 22.68 36.50 33.86 19.79 40.35 17.27 43.59 30.49 7.71 17.14 33.53 35.75 48.01 19.39 17.84 16.33 11.96 14.76 18.06 24.80 73 E6_Dc KnownBoundary 0 48.16 11.84 38.67 22.14 53.31 20.61 23.01 57.83 23.47 25.65 18.74 0.00 14.61 48.91 58.35 29.91 13.00 11.69 20.71 9.27 20.51 8.76 24.24 74 ER6e ExonRegion 0 19.36 10.54 23.45 14.25 16.12 24.85 13.54 28.68 15.06 35.39 24.37 3.47 5.06 29.16 33.07 27.30 17.85 11.30 7.39 10.31 7.96 10.43 15.11 75 E6_Ac KnownBoundary 0 38.15 2.83 30.37 14.68 14.69 46.62 10.86 18.07 12.33 39.33 25.53 0.00 0.00 35.02 57.98 15.04 15.80 17.04 0.00 2.94 5.19 0.00 7.60 76 ER6f ExonRegion 0 116.78 81.50 160.47 157.31 82.95 134.62 64.02 193.10 174.66 238.04 196.22 45.51 53.48 212.59 312.86 180.46 140.86 120.27 82.99 87.84 224.46 202.23 129.73 77 E6_Dd KnownBoundary 0 136.10 79.66 131.01 123.56 81.58 183.53 83.16 147.74 187.93 220.51 164.04 38.26 19.15 229.91 270.35 177.56 117.72 164.11 77.56 83.35 212.21 192.89 183.70 78 ER6g ExonRegion 0 104.41 78.74 122.62 123.31 86.51 152.95 63.64 166.75 146.44 220.03 159.96 24.04 44.58 173.23 248.72 128.44 127.58 132.03 63.43 67.13 180.58 154.42 137.34 79 E6_De KnownBoundary 0 159.14 141.75 146.15 136.18 125.81 176.55 55.25 185.20 187.32 234.64 146.25 17.86 46.91 192.30 183.82 163.80 122.39 156.61 60.90 80.60 161.30 184.74 132.40 80 ER6h ExonRegion 0 104.80 88.61 128.43 125.64 91.90 181.30 71.82 178.28 154.40 222.07 150.69 39.95 30.83 184.50 263.62 165.21 140.10 140.78 61.93 58.64 184.07 160.88 131.92 81 E6_Df KnownBoundary 0 98.24 89.13 124.48 144.04 117.32 147.47 78.65 217.08 151.53 220.81 139.40 33.31 54.38 195.13 325.73 199.26 110.33 170.58 42.82 57.53 189.47 237.65 165.95 82 ER6i ExonRegion 0 60.63 46.33 99.90 88.42 55.63 89.26 35.37 163.60 129.89 195.65 130.47 26.53 30.72 139.10 259.93 147.14 113.91 107.34 72.92 56.86 151.80 139.20 97.43 83 ER6j ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 1.15 0.00 0.00 0.00 4.87 2.90 2.97 0.00 0.00 0.00 4.26 2.20 0.00 2.94