Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MANEAL Gene 0 8.89 50.35 70.12 74.51 58.12 193.77 105.62 104.44 95.19 170.86 52.76 6.32 18.03 48.33 47.79 31.37 20.62 144.48 89.14 77.70 1.28 2.07 3.95 2 373045 Transcript 0 8.00 24.80 43.17 54.85 30.22 100.57 71.20 72.77 101.29 165.61 32.73 6.30 11.87 38.14 28.17 27.53 11.37 155.84 109.79 46.67 0.00 3.77 1.84 3 357999 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 397631 Transcript 0 2.18 18.19 18.56 33.75 29.91 63.44 38.82 37.49 41.26 36.97 33.13 9.15 16.10 16.82 19.84 13.35 6.65 60.68 41.45 41.71 0.15 1.22 3.32 5 329006 Transcript 0 0.44 0.97 3.69 2.05 0.86 6.43 3.60 3.16 2.17 5.70 0.33 0.00 0.02 1.25 0.71 0.87 0.20 4.58 3.21 5.03 0.02 0.01 0.00 6 ER1a ExonRegion 0 0.00 0.00 1.63 0.89 0.59 4.09 1.16 5.07 3.47 16.40 12.87 0.00 0.85 4.52 5.04 3.88 2.17 11.84 10.25 7.12 0.00 0.00 0.00 7 E1_Ab KnownBoundary 0 0.00 0.00 7.51 1.23 0.00 5.17 0.00 25.92 11.86 39.33 17.06 0.00 0.00 19.48 5.19 3.67 0.00 43.94 18.26 11.44 0.00 0.00 0.00 8 ER1b ExonRegion 0 1.32 11.62 23.96 17.63 11.41 66.99 30.13 35.63 34.96 89.64 36.88 1.44 8.26 36.14 23.62 15.04 14.04 90.70 51.28 35.31 1.16 0.96 0.48 9 E1a_E2b KnownJunction 1 6.52 49.66 120.16 119.30 84.13 233.45 116.55 149.96 122.11 342.68 94.66 0.00 6.49 130.50 86.53 74.68 43.85 397.50 173.28 149.95 5.44 2.94 0.00 10 ER2a ExonRegion 0 0.44 0.97 3.69 2.05 0.86 6.43 3.60 3.16 2.17 5.70 0.33 0.00 0.02 1.25 0.71 0.87 0.20 4.58 3.21 5.03 0.02 0.01 0.00 11 E2_Ab KnownBoundary 0 0.00 6.12 1.66 0.00 0.00 2.67 5.30 0.00 7.09 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 9.40 0.00 0.00 0.00 12 ER2b ExonRegion 0 4.25 49.48 129.98 95.44 67.90 285.75 129.23 151.36 167.83 323.09 96.33 2.78 19.92 101.08 85.55 54.04 40.34 324.09 169.58 147.28 3.50 4.15 0.00 13 E2a_E3a KnownJunction 0 0.00 32.89 148.87 87.20 71.65 303.63 135.14 161.50 183.94 310.15 100.29 6.30 40.09 56.74 44.50 32.21 55.82 194.87 137.04 110.58 6.30 2.76 0.00 14 E2a_E4a KnownJunction 0 0.00 12.10 3.52 7.13 8.66 10.16 9.94 14.87 4.31 40.00 11.79 0.00 12.99 4.94 11.13 3.59 13.28 24.17 24.85 10.93 0.00 0.00 0.00 15 E2a_E4b NovelJunction 0 0.00 0.00 14.04 23.61 12.99 41.06 18.37 4.11 8.77 19.29 14.79 0.00 0.00 14.42 9.64 0.00 0.00 54.93 4.61 27.29 2.29 0.00 0.00 16 ER3a ExonRegion 0 9.76 57.63 115.81 115.33 81.31 319.65 142.99 174.30 211.12 354.08 121.22 10.80 49.40 83.63 62.06 66.08 43.64 306.97 181.57 158.52 1.57 6.49 3.43 17 E3_Da NovelBoundary 0 2.89 16.12 6.59 3.76 8.32 80.75 35.82 4.11 2.86 8.68 20.53 0.00 0.00 13.77 6.30 13.33 10.94 4.85 29.37 25.31 0.00 4.78 0.00 18 E3a_E4a KnownJunction 0 16.00 49.60 84.71 108.81 59.85 197.05 141.23 140.47 199.10 314.82 52.59 12.60 22.89 71.75 51.30 51.18 20.57 299.83 209.32 86.22 0.00 7.53 3.67 19 E3a_E4b KnownJunction 0 3.41 15.19 36.57 62.63 38.96 89.04 56.79 72.95 72.13 67.75 52.80 18.31 27.27 21.48 32.63 23.07 13.18 117.48 69.27 52.35 0.00 2.45 4.35 20 E4_Aa NovelBoundary 0 0.00 24.07 11.83 7.33 11.97 13.06 15.85 18.77 9.61 23.13 0.00 0.00 6.33 2.47 0.00 0.00 0.00 6.30 3.86 13.93 0.00 2.63 0.00 21 ER4a ExonRegion 0 6.91 52.28 72.95 82.58 57.86 252.23 112.02 133.42 144.31 279.01 59.00 5.54 28.83 47.90 48.63 33.60 29.02 212.94 117.18 106.96 0.81 1.74 2.58 22 E4_Ab KnownBoundary 0 0.00 39.73 40.63 28.43 28.86 254.46 116.41 60.95 69.47 124.93 34.38 11.25 18.34 21.90 19.78 12.13 0.00 87.63 63.25 59.32 0.00 0.00 0.00 23 ER4b ExonRegion 0 13.85 80.26 71.73 71.97 56.83 326.08 171.81 92.94 94.60 137.86 37.70 11.85 24.17 49.53 48.17 30.67 18.33 156.06 90.00 83.84 0.80 1.90 2.25 24 E4_Da KnownBoundary 0 23.78 94.52 126.34 142.61 117.91 366.55 223.20 167.38 173.87 305.85 93.02 25.36 46.75 72.52 127.33 63.06 40.11 300.91 145.32 178.52 3.15 5.45 0.00 25 ER4c ExonRegion 0 18.01 102.44 153.43 172.02 135.19 363.89 218.57 228.92 186.53 331.09 99.76 10.81 29.28 87.44 96.82 62.03 34.73 253.28 164.96 136.00 1.14 3.58 7.90 26 E4_Db KnownBoundary 0 0.00 54.86 22.26 47.38 54.58 91.71 47.92 47.69 57.99 54.10 25.22 0.00 6.82 23.78 8.90 16.06 13.93 39.80 48.00 48.00 0.00 0.00 0.00 27 ER4d ExonRegion 0 9.26 26.19 14.17 20.78 22.74 45.03 24.41 26.30 28.34 26.45 15.68 7.76 11.06 16.04 19.22 11.84 11.45 27.52 25.46 43.17 3.48 2.04 8.70 28 E4_Dc KnownBoundary 0 106.54 229.30 38.38 61.50 106.62 184.04 131.91 113.61 88.80 61.38 41.12 0.00 32.79 17.48 9.39 57.25 45.35 53.02 188.05 141.96 69.31 130.00 136.75 29 ER4e ExonRegion 0 0.95 21.18 0.55 4.86 20.85 37.85 20.84 2.03 10.39 6.19 13.46 0.00 4.93 12.15 7.05 3.64 0.11 3.89 13.62 31.07 0.30 0.00 2.28 30 IG49 Intergenic 0 11.11 40.53 40.69 74.42 71.96 100.99 80.99 64.85 59.17 59.14 19.26 5.89 18.56 17.86 19.97 7.01 5.66 49.60 53.24 58.13 0.47 1.12 2.52 31 IG49_SR2 SilentIntergenicRegion 0 11.11 40.53 40.69 74.42 71.96 100.99 80.99 64.85 59.17 59.14 19.26 5.89 18.56 17.86 19.97 7.01 5.66 49.60 53.24 58.13 0.47 1.12 2.52