Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SNIP1 Gene 0 39.80 29.04 18.82 31.45 57.25 70.41 48.73 47.29 37.36 70.30 54.36 46.54 46.31 73.84 57.34 55.13 59.12 17.03 18.48 21.11 36.28 49.75 42.15 2 436196 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 296215 Transcript 0 9.42 16.50 11.41 9.97 24.50 97.94 31.79 21.48 24.57 51.28 46.73 12.96 18.05 54.81 23.84 46.78 31.58 13.27 8.07 13.14 33.87 24.96 13.62 4 493916 Transcript 0 3.87 2.63 0.59 3.27 6.59 2.22 6.80 3.37 8.68 5.60 1.96 1.15 0.74 0.86 1.34 6.21 8.96 2.02 6.17 4.00 5.61 0.67 5.13 5 468040 Transcript 0 4.36 4.01 1.81 3.25 8.73 3.08 11.15 5.17 2.94 3.31 2.67 4.93 8.33 4.97 2.15 7.01 6.32 2.72 3.16 5.19 1.85 0.80 5.91 6 ER1a ExonRegion 0 0.00 2.03 0.09 0.00 2.68 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.25 2.90 1.60 3.30 0.00 0.00 0.00 0.00 1.60 0.00 7 ER1b ExonRegion 1 14.41 23.97 2.89 1.30 27.90 137.97 38.90 10.41 5.88 22.58 44.18 0.00 2.79 56.53 69.63 57.81 54.07 8.36 14.33 29.74 31.43 22.77 62.79 8 E1_Ac KnownBoundary 1 38.01 57.03 6.18 5.39 63.75 396.48 119.50 22.39 13.51 48.00 97.24 5.55 6.82 114.13 137.71 129.20 111.64 36.02 36.80 65.32 64.31 56.15 168.59 9 ER1c ExonRegion 1 7.97 23.31 6.32 4.82 37.60 199.43 58.25 22.01 19.65 45.14 44.25 5.88 5.11 40.49 38.13 86.56 66.31 17.85 22.70 26.94 39.63 21.69 67.80 10 E1_Da KnownBoundary 0 3.26 6.05 3.49 3.53 14.09 48.72 4.50 12.61 17.25 29.82 12.69 5.55 0.00 0.00 19.28 21.96 16.74 12.81 7.53 7.86 14.83 3.06 17.50 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1d ExonRegion 0 0.15 1.92 4.26 2.05 4.57 7.30 1.52 9.37 10.80 31.53 22.95 4.56 7.82 36.73 36.02 22.85 40.60 5.16 6.78 13.99 33.00 18.53 22.28 13 E1b_E2a KnownJunction 0 0.00 0.00 8.13 6.83 20.88 22.83 6.58 23.21 12.82 29.52 46.06 6.30 22.24 46.03 48.95 86.56 45.54 27.32 17.88 24.03 56.22 17.08 46.44 14 I1_AR1 ActiveIntronRegion 0 2.58 0.83 2.21 4.33 0.46 0.00 2.36 1.34 7.66 4.50 3.96 3.21 2.93 3.60 5.46 12.66 6.24 4.27 3.85 5.83 6.25 3.24 6.52 15 E2_Aa NovelBoundary 0 3.78 2.70 5.47 8.82 25.47 2.33 14.04 6.74 23.06 4.70 0.00 5.85 15.10 4.94 8.90 15.04 9.16 0.00 10.73 6.46 9.45 5.14 4.35 16 ER2a ExonRegion 0 3.29 11.04 7.99 8.88 16.48 62.55 17.33 23.27 17.98 46.53 55.57 18.86 21.61 45.74 48.18 50.79 64.07 22.77 8.36 22.19 55.88 26.83 47.62 17 E2_Da KnownBoundary 0 14.82 21.38 14.07 9.89 23.85 128.51 44.52 39.84 26.85 65.81 51.70 26.41 13.64 54.15 46.36 64.94 84.99 30.39 9.41 30.74 60.67 31.66 70.00 18 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER2b ExonRegion 1 9.68 19.60 11.08 10.82 41.84 165.82 60.51 49.10 38.50 75.01 54.78 39.33 25.15 77.16 27.41 52.23 55.83 26.50 13.89 25.17 52.33 30.90 39.61 20 E2_Db KnownBoundary 0 2.89 0.00 0.00 3.43 4.33 10.51 9.76 11.83 19.62 5.72 1.95 7.65 6.82 0.00 0.00 8.54 7.48 2.03 0.00 12.21 6.18 0.00 7.85 21 E2b_E3a KnownJunction 0 0.00 2.57 0.00 0.00 4.33 0.00 21.15 3.82 0.00 7.17 2.68 0.00 0.00 4.53 0.00 0.00 4.58 2.57 0.00 0.00 0.00 0.00 3.41 22 E2b_E4a KnownJunction 1 3.78 20.92 18.54 5.93 55.26 233.16 56.79 32.90 29.40 74.06 81.70 11.55 13.80 95.42 35.85 48.02 27.68 16.83 8.09 16.94 45.28 26.09 6.91 23 ER2c ExonRegion 0 3.87 2.63 0.59 3.27 6.59 2.22 6.80 3.37 8.68 5.60 1.96 1.15 0.74 0.86 1.34 6.21 8.96 2.02 6.17 4.00 5.61 0.67 5.13 24 E2_Dc NovelBoundary 0 8.67 6.05 6.24 3.33 0.00 0.00 11.79 9.41 7.15 3.65 2.53 6.30 0.00 0.00 4.45 20.93 13.84 2.45 0.00 8.76 3.03 0.00 4.35 25 E3_Aa NovelBoundary 1 82.09 2.57 12.00 11.15 15.53 29.76 38.51 16.18 18.32 7.92 2.32 18.46 41.39 4.94 19.66 11.36 7.95 0.00 0.00 10.35 2.78 0.00 14.17 26 ER3a ExonRegion 1 17.45 13.48 7.25 13.01 30.60 12.33 23.43 16.87 11.76 6.05 7.99 19.73 33.34 15.36 8.62 28.03 20.69 8.31 12.65 20.78 7.40 3.18 16.65 27 E3_Da NovelBoundary 0 22.60 3.03 5.62 1.53 11.38 2.38 17.67 4.27 5.99 7.74 4.69 0.00 6.82 4.94 0.00 10.94 3.83 1.91 3.67 0.00 0.00 0.00 11.35 28 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.59 29 I3_AR1 ActiveIntronRegion 0 16.49 1.44 0.00 0.00 15.16 0.00 6.56 0.00 1.29 0.00 2.74 2.53 5.47 0.00 3.38 6.32 2.34 0.00 0.00 0.00 3.09 0.00 4.08 30 ER4a ExonRegion 0 26.68 29.09 15.36 19.03 22.50 70.95 30.07 41.44 31.26 68.43 61.87 38.39 32.54 91.79 55.35 78.61 67.42 28.64 18.76 21.67 66.55 45.11 45.14 31 E4_Da KnownBoundary 0 23.93 25.52 14.34 25.14 27.59 52.24 33.83 22.71 38.69 50.55 40.80 24.76 12.01 47.44 18.67 88.95 53.58 31.42 11.58 5.88 34.72 48.80 28.85 32 E4_Ab KnownBoundary 0 10.59 12.56 6.18 14.45 21.48 41.79 22.13 25.18 31.89 56.65 46.06 6.30 20.29 38.85 44.01 46.14 45.91 16.00 18.92 28.00 49.42 25.84 21.60 33 ER4b ExonRegion 0 20.24 24.53 15.70 23.08 18.23 56.39 35.50 31.54 44.31 79.78 58.47 23.00 27.85 69.03 30.83 92.32 67.05 22.98 16.13 22.47 56.33 47.40 33.95 34 ER4c ExonRegion 0 27.94 18.99 16.73 39.66 53.57 72.86 51.31 58.20 52.09 94.75 77.09 50.22 63.54 110.08 58.10 96.39 86.71 35.20 19.33 20.30 59.66 57.61 54.95 35 E4b_E5a KnownJunction 0 9.33 29.73 11.03 37.59 27.16 48.67 44.52 53.48 44.27 74.49 53.59 19.51 57.30 54.74 58.22 40.25 65.45 31.26 13.46 11.70 37.44 58.42 41.32 36 ER5a ExonRegion 0 61.09 41.01 26.84 44.47 83.93 83.01 66.18 62.42 47.12 88.09 64.05 65.30 61.23 85.42 74.34 53.45 63.96 14.89 22.42 23.55 31.73 67.20 47.04 37 ER5b ExonRegion 0 4.23 4.07 0.00 0.91 0.00 4.28 3.09 0.00 0.00 0.00 0.00 4.33 12.51 0.00 4.84 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 38 IG39_AR5 ActiveIntergenicRegion 0 2.47 5.88 8.83 13.11 29.19 25.66 17.62 16.64 9.88 20.64 3.65 18.63 17.43 10.28 9.46 7.87 6.51 4.65 5.67 5.68 3.89 13.54 12.68 39 IG39_AR4 ActiveIntergenicRegion 0 14.00 13.98 21.83 22.58 33.51 31.82 21.96 18.16 11.99 37.25 5.17 18.38 16.60 18.09 23.52 11.84 17.32 5.74 7.60 6.28 12.68 10.39 5.11 40 IG39_AR3 ActiveIntergenicRegion 0 10.40 15.21 13.16 14.46 26.76 22.32 9.50 9.99 6.77 29.47 8.07 4.89 3.87 11.02 11.10 1.68 7.18 2.41 13.02 3.89 9.87 7.79 8.68 41 IG39_SR2 SilentIntergenicRegion 0 10.15 8.81 9.47 16.37 22.07 16.04 16.07 10.77 7.19 19.86 5.01 5.95 5.05 7.59 9.60 8.93 6.97 2.77 9.00 3.78 3.87 14.01 11.86 42 IG39_AR2 ActiveIntergenicRegion 0 31.29 17.13 16.54 23.40 61.14 35.75 30.15 32.50 21.75 36.60 8.36 12.49 10.06 9.74 22.14 14.07 13.87 5.33 3.12 6.77 11.33 23.12 17.01