Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RHBDL2 Gene 0 5.91 4.60 8.00 4.71 13.33 8.63 9.16 10.72 15.35 8.98 0.85 4.02 4.42 3.05 8.49 5.37 3.68 4.66 4.01 4.16 8.21 2.93 13.02 2 478955 Transcript 0 2.82 0.10 2.69 0.53 5.97 2.69 3.49 5.60 6.96 2.73 0.00 1.58 1.63 1.49 2.93 4.38 0.00 0.77 4.32 0.00 3.68 2.33 2.28 3 372990 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 289248 Transcript 0 4.46 2.98 2.91 3.26 7.83 7.29 4.56 10.84 17.98 7.33 0.73 1.70 2.16 1.65 5.27 2.81 2.08 2.99 1.61 2.06 6.08 1.77 11.85 5 372985 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 1.98 0.00 1.23 0.00 2.01 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 7 ER1b ExonRegion 0 0.75 0.00 1.97 2.06 1.02 0.00 1.12 0.00 0.92 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.31 0.00 2.91 8 E1a_E3a KnownJunction 0 0.00 0.00 7.54 0.00 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 0 4.46 2.98 2.91 3.26 7.83 7.29 4.56 10.84 17.98 7.33 0.73 1.70 2.16 1.65 5.27 2.81 2.08 2.99 1.61 2.06 6.08 1.77 11.85 10 E2_Ab KnownBoundary 0 6.00 0.00 4.61 9.52 16.38 7.38 19.08 33.48 42.13 10.42 0.00 5.85 0.00 2.30 0.00 0.00 0.00 8.58 0.00 3.20 5.93 2.88 0.00 11 ER2b ExonRegion 0 2.26 1.06 2.12 3.51 8.38 16.19 5.75 12.56 22.25 5.77 0.00 0.40 0.00 0.19 0.00 0.00 4.14 2.17 0.00 0.88 6.35 3.58 2.00 12 E2_Da NovelBoundary 0 17.34 0.00 0.00 6.16 22.67 22.03 13.78 31.63 36.83 12.89 0.00 6.30 0.00 0.00 5.19 0.00 0.00 0.00 0.00 3.26 3.03 0.00 0.00 13 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 I2 Intron 0 3.86 3.31 1.72 3.98 15.88 11.95 6.69 11.52 17.94 10.00 1.17 4.13 2.11 1.41 3.46 3.94 0.73 1.32 3.96 0.53 5.29 2.59 8.92 15 I2_SR1 SilentIntronRegion 0 2.29 2.00 1.86 3.33 13.69 13.31 6.47 10.08 15.17 7.73 1.37 4.19 2.30 1.78 2.83 3.55 0.85 1.36 3.89 0.54 5.82 2.18 9.38 16 I2_AR1 ActiveIntronRegion 0 7.41 8.02 2.45 1.74 17.99 11.82 7.13 15.94 25.32 10.96 3.11 0.00 0.00 3.07 0.00 3.80 4.40 0.82 6.72 1.30 11.39 2.43 2.94 17 I2_AR2 ActiveIntronRegion 0 6.35 10.17 2.45 0.00 21.85 16.50 6.62 14.98 24.29 10.32 3.87 0.00 0.00 0.00 0.00 1.98 3.30 2.77 6.37 0.00 8.81 2.08 5.87 18 I2_AR3 ActiveIntronRegion 0 7.07 5.89 1.54 5.71 21.24 10.16 7.63 15.08 24.46 15.21 0.78 4.55 2.00 0.76 5.14 5.06 0.39 1.34 4.27 0.54 4.44 3.60 8.96 19 E3_Aa NovelBoundary 0 0.00 3.09 8.46 1.90 3.57 2.67 6.62 23.37 55.47 38.04 2.53 0.00 0.00 9.42 6.18 12.05 0.00 1.91 0.00 3.26 8.65 8.02 8.54 20 ER3a ExonRegion 0 6.10 2.53 5.13 4.77 10.53 6.84 7.46 10.65 15.67 13.57 0.53 1.96 2.35 4.75 9.12 7.81 0.98 7.33 5.69 2.63 10.28 4.30 16.12 21 E3_Da NovelBoundary 0 3.33 0.00 3.25 0.00 0.00 10.96 0.00 13.76 20.66 18.75 0.00 0.00 0.00 0.00 20.40 0.00 4.77 6.55 3.58 0.00 8.83 9.06 15.54 22 E3a_E4a KnownJunction 0 0.00 0.00 3.31 5.79 4.33 0.00 0.00 0.00 1.53 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 Ix Intron 0 5.38 2.66 4.51 5.83 13.32 10.26 7.41 16.28 25.81 13.59 0.98 4.44 2.86 3.36 6.61 8.10 2.28 7.37 7.64 1.93 12.17 3.10 20.16 24 Ix_AR2 ActiveIntronRegion 0 2.78 1.05 2.90 4.76 9.52 5.91 7.62 16.66 23.81 15.82 0.00 2.00 4.21 2.49 8.42 6.16 3.42 8.95 6.55 0.55 17.92 3.04 20.69 25 Ix_SR1 SilentIntronRegion 0 5.34 3.07 4.46 6.49 15.15 12.07 7.56 17.08 27.04 13.39 1.17 4.38 3.02 3.57 6.59 8.11 1.75 6.45 7.90 2.17 10.38 3.06 20.95 26 Ix_AR1 ActiveIntronRegion 0 9.20 1.91 7.06 2.60 5.48 3.27 6.16 10.35 20.08 12.25 0.96 8.14 0.00 3.00 4.48 10.69 4.52 11.90 7.29 2.08 17.36 3.57 14.13 27 E4_Aa NovelBoundary 0 13.85 3.22 7.84 6.16 41.85 5.79 21.90 17.70 45.23 14.45 0.00 12.30 0.00 4.94 0.00 8.54 0.00 9.12 3.76 5.24 21.37 2.45 16.73 28 ER4a ExonRegion 0 6.38 4.75 13.36 4.74 22.11 12.23 10.57 15.68 25.29 14.01 0.00 6.33 0.31 2.52 5.76 7.60 4.52 5.99 5.30 1.46 13.73 2.81 14.05 29 E4_Da KnownBoundary 0 0.00 2.43 12.24 5.16 30.81 15.62 4.50 29.53 40.19 20.79 0.00 0.00 6.66 5.24 9.64 11.79 0.00 4.60 8.94 0.00 20.94 8.08 7.09 30 E4a_E5a KnownJunction 0 3.11 0.00 5.41 2.06 0.00 0.00 4.15 2.46 1.79 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 4.18 31 ER4b ExonRegion 0 3.66 0.21 4.15 1.06 9.93 5.38 5.65 11.19 13.92 5.46 0.00 3.16 3.26 2.97 5.85 8.77 0.00 1.53 8.64 0.00 7.36 4.66 4.38 32 E4_Db NovelBoundary 0 6.67 0.00 4.70 5.16 0.00 2.10 5.74 7.52 46.32 9.37 0.00 12.60 0.00 2.18 4.45 14.36 0.00 5.14 9.32 2.81 7.85 0.00 19.89 33 Ix Intron 0 0.68 0.44 3.91 1.74 8.89 2.75 4.96 7.18 12.82 3.11 0.00 1.15 0.41 3.00 4.11 6.69 1.06 0.99 2.73 0.91 4.72 0.89 13.21 34 Ix_SR1 SilentIntronRegion 0 0.68 0.44 3.91 1.74 8.89 2.75 4.96 7.18 12.82 3.11 0.00 1.15 0.41 3.00 4.11 6.69 1.06 0.99 2.73 0.91 4.72 0.89 13.21 35 Ix Intron 0 4.32 0.83 4.47 2.49 10.92 7.73 8.46 9.11 14.52 6.04 0.00 0.97 2.96 1.78 1.16 3.23 0.90 2.25 2.17 0.58 4.50 2.83 16.77 36 Ix_SR1 SilentIntronRegion 0 4.33 0.83 4.48 2.49 10.95 7.75 8.48 9.13 14.56 6.06 0.00 0.97 2.96 1.78 1.16 3.24 0.90 2.25 2.17 0.58 4.51 2.84 16.82 37 E5_Aa NovelBoundary 0 3.63 7.76 8.40 10.99 22.75 13.63 2.03 20.21 29.57 7.39 0.00 0.00 0.00 0.00 8.90 0.00 0.00 0.00 0.00 0.00 11.74 8.76 3.76 38 ER5a ExonRegion 0 4.01 4.32 9.92 6.98 21.71 5.79 8.80 10.72 26.81 6.72 0.00 1.61 1.78 2.46 1.85 2.74 0.00 0.00 7.19 0.00 10.88 4.20 13.80 39 E5_Da NovelBoundary 0 0.00 3.35 19.60 15.88 33.62 2.21 16.12 27.81 26.76 1.13 2.21 5.70 0.00 0.00 0.00 0.00 0.00 2.49 4.61 0.00 10.81 0.00 29.36 40 E5a_E6a KnownJunction 0 0.00 3.03 9.40 0.00 0.00 0.00 0.00 0.00 1.50 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 Ix Intron 0 3.15 1.63 6.19 4.50 10.77 8.68 8.12 12.91 19.00 10.00 0.50 2.66 1.54 2.37 5.01 4.43 2.34 3.29 3.56 1.94 6.04 2.95 13.68 42 Ix_SR3 SilentIntronRegion 0 4.40 1.78 8.59 4.45 16.69 7.43 9.56 19.17 21.75 9.16 1.06 3.68 1.78 1.17 3.32 1.95 1.45 1.11 5.23 0.23 7.24 3.19 10.93 43 Ix_AR3 ActiveIntronRegion 0 3.05 1.90 7.43 5.76 9.97 10.49 9.14 16.58 23.93 15.78 0.57 2.36 1.31 3.13 6.15 6.92 3.08 6.34 4.59 2.16 8.21 3.80 19.16 44 Ix_SR1 SilentIntronRegion 0 3.00 1.50 4.45 3.68 10.46 8.21 7.43 7.15 14.50 4.55 0.22 3.03 1.80 2.19 5.30 3.03 2.24 0.94 1.99 2.89 3.24 2.13 10.32 45 E6_Aa NovelBoundary 0 0.00 5.85 17.24 8.92 32.00 10.39 16.65 16.39 22.54 13.03 0.00 6.30 0.00 2.47 0.00 4.36 12.06 1.95 0.00 5.69 2.78 0.00 20.49 46 ER6a ExonRegion 0 3.23 4.51 14.89 5.99 25.64 10.19 8.42 7.96 12.47 11.56 0.98 1.89 3.85 4.92 1.03 5.97 0.00 0.00 6.43 2.15 6.74 7.36 22.18 47 E6_Da NovelBoundary 0 0.00 0.00 12.71 13.05 33.45 5.51 12.41 21.65 33.88 6.90 0.00 12.60 6.66 0.00 8.90 4.36 3.65 6.22 0.00 0.00 2.97 6.25 20.40 48 E6a_E7a KnownJunction 0 0.00 2.57 5.97 0.00 0.00 0.00 2.25 1.73 5.99 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E7_Aa NovelBoundary 0 0.00 3.16 9.37 9.59 25.38 7.95 17.62 20.41 32.00 8.89 0.00 0.00 26.46 0.00 6.30 4.36 0.00 0.00 3.58 0.00 0.00 5.51 14.85 50 ER7a ExonRegion 0 0.35 1.53 5.20 0.00 3.77 3.28 11.09 1.96 3.16 3.05 0.00 8.80 6.46 2.08 1.71 2.44 2.76 0.00 2.66 1.92 3.68 1.74 7.56 51 E7_Da NovelBoundary 0 10.96 0.00 0.00 3.60 15.03 12.27 12.76 6.61 13.54 9.67 0.00 24.01 6.66 2.47 4.45 3.76 0.00 0.00 0.00 6.26 5.81 5.94 11.87 52 E7a_E8a KnownJunction 0 2.96 0.00 2.93 0.00 3.99 2.16 7.77 1.60 1.65 6.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 Ix Intron 0 8.66 3.98 7.19 4.33 15.83 13.35 9.78 16.37 28.46 14.17 1.53 8.05 9.03 3.27 7.55 10.33 4.43 6.39 5.67 5.80 12.69 3.85 25.96 54 Ix_AR1 ActiveIntronRegion 0 9.50 4.79 2.98 2.88 7.14 9.99 7.29 8.30 11.90 7.76 1.82 2.99 8.86 1.90 3.91 6.93 2.87 1.19 2.59 5.87 4.80 1.66 16.01 55 Ix_SR1 SilentIntronRegion 0 8.65 3.91 7.97 4.63 17.45 14.09 10.33 17.90 31.52 15.40 1.51 8.97 9.20 3.53 8.25 11.02 4.74 7.31 6.25 5.88 14.14 4.26 27.94 56 E8_Aa NovelBoundary 0 3.48 3.29 10.64 2.83 10.27 4.66 24.69 21.85 25.29 10.88 0.00 6.30 6.82 7.24 4.45 12.30 0.00 0.00 0.00 2.94 7.91 0.00 7.77 57 ER8a ExonRegion 0 2.12 3.12 8.10 0.00 7.29 14.79 11.15 2.54 3.31 3.57 0.00 0.00 3.18 1.13 3.93 2.44 2.72 0.03 0.00 5.11 3.55 1.78 10.23 58 E8_Da NovelBoundary 0 3.63 2.50 8.07 3.73 11.80 33.67 14.75 23.37 24.02 16.82 0.00 18.61 0.00 4.94 9.64 11.62 3.74 2.57 0.00 0.00 5.99 0.00 35.25 59 E8a_E9a KnownJunction 0 3.48 0.00 18.04 0.00 0.00 0.00 10.82 2.30 6.51 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.18 60 Ix Intron 0 4.66 4.48 7.35 5.49 11.61 8.65 9.99 11.02 15.63 10.10 0.97 6.53 5.43 1.77 6.85 5.79 1.87 2.26 3.61 4.15 4.02 3.01 14.22 61 Ix_SR1 SilentIntronRegion 0 4.86 4.58 7.56 5.53 12.06 8.92 10.39 11.18 16.15 10.35 1.00 6.82 5.67 1.85 6.75 5.93 1.95 2.31 3.76 4.16 4.12 3.09 14.63 62 E9_Aa NovelBoundary 0 14.45 3.35 9.22 15.42 11.88 7.78 4.11 22.02 23.64 20.28 0.00 25.81 6.82 0.00 10.75 0.00 0.00 4.64 4.52 3.26 13.41 3.00 12.12 63 ER9a ExonRegion 0 6.33 4.40 14.65 3.84 23.14 10.99 16.65 16.97 15.58 10.22 0.77 5.01 10.81 2.37 10.81 4.69 3.04 3.73 3.02 6.21 10.73 3.42 15.33 64 E9_Da KnownBoundary 0 7.04 5.85 16.11 9.02 48.05 28.96 22.21 15.69 21.96 7.74 6.74 6.30 7.79 2.41 8.90 0.00 9.44 2.24 9.41 8.88 6.30 3.12 21.43 65 ER9b ExonRegion 0 11.89 11.82 12.99 9.45 15.72 10.80 14.32 9.04 11.15 9.70 2.42 10.49 8.45 6.05 20.51 10.55 11.74 10.85 7.58 11.50 8.98 2.93 14.70