Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPP1R8 Gene 0 90.60 84.51 65.21 65.18 150.84 147.18 99.36 111.05 81.68 135.37 246.36 158.51 98.53 220.06 169.98 203.57 197.91 65.14 54.69 52.24 92.99 130.84 88.36 2 311772 Transcript 0 3.83 0.55 0.70 0.07 24.15 20.42 6.30 0.84 1.57 1.61 10.76 0.00 0.00 10.32 6.43 20.32 6.33 0.75 0.00 0.23 3.81 1.80 8.73 3 236412 Transcript 0 4.10 0.03 2.42 1.48 1.53 1.23 2.08 1.14 2.48 1.28 6.69 2.72 1.53 11.79 6.36 9.91 5.50 4.41 0.00 0.00 4.28 4.05 1.84 4 373931 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.61 0.00 0.00 1.71 5.61 9.21 0.00 0.00 2.41 4.45 4.36 0.00 2.57 0.00 0.00 0.00 2.82 0.00 5 434313 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 359986 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 399116 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 399118 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 431586 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 486634 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 ER1a ExonRegion 0 3.83 0.55 0.70 0.07 24.15 20.42 6.30 0.84 1.57 1.61 10.76 0.00 0.00 10.32 6.43 20.32 6.33 0.75 0.00 0.23 3.81 1.80 8.73 12 E1_Ab KnownBoundary 0 3.41 0.00 0.00 0.00 12.14 24.13 2.25 0.00 0.00 0.00 7.63 0.00 0.00 0.00 0.00 3.93 4.77 0.00 0.00 0.00 0.00 0.00 3.93 13 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1_Ad KnownBoundary 0 13.11 8.55 1.83 2.70 105.52 62.41 25.26 4.11 2.58 11.01 32.69 0.00 0.00 12.01 9.77 76.73 41.61 12.56 7.15 2.88 20.08 30.98 38.16 15 ER1b ExonRegion 1 13.76 7.63 1.23 2.56 90.64 78.39 26.64 3.46 2.47 9.75 39.38 0.00 0.00 41.21 27.92 79.88 35.90 11.78 5.97 2.39 16.80 21.10 40.01 16 ER1c ExonRegion 1 83.96 76.60 7.35 14.08 297.90 305.63 106.80 21.89 25.11 48.17 165.59 0.00 0.00 81.75 122.82 349.72 183.75 68.98 76.45 48.94 95.49 134.04 174.24 17 ER1d ExonRegion 1 136.61 133.26 25.06 32.98 454.43 511.44 171.09 51.04 65.09 109.74 259.51 2.76 3.20 152.45 153.02 532.69 301.68 140.23 132.00 91.10 153.36 214.35 264.08 18 E1_Da KnownBoundary 0 0.00 0.00 0.00 1.30 3.31 0.00 0.00 1.81 4.51 7.39 2.42 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 19 E1a_E2a KnownJunction 0 12.22 16.97 32.23 24.14 33.28 58.72 9.49 46.25 55.93 103.31 32.17 0.00 12.82 19.37 25.34 55.28 29.45 69.23 13.93 11.51 21.99 13.41 66.07 20 ER1e ExonRegion 0 2.43 2.63 5.91 2.96 1.98 6.70 2.71 5.16 5.77 11.12 15.39 6.93 3.34 12.49 9.29 15.40 19.30 3.28 3.66 2.45 6.95 5.39 6.38 21 E1_Db KnownBoundary 0 25.78 0.00 1.74 0.00 0.00 0.00 0.00 9.16 1.27 4.14 9.05 18.61 0.00 27.37 14.09 19.99 22.25 4.27 4.24 0.00 8.40 12.19 0.00 22 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.61 0.00 0.00 1.71 5.61 9.21 0.00 0.00 2.41 4.45 4.36 0.00 2.57 0.00 0.00 0.00 2.82 0.00 23 ER1f ExonRegion 0 8.19 0.05 4.84 0.93 3.05 2.47 4.16 2.28 2.04 0.97 8.00 5.44 3.07 11.99 12.72 15.47 11.00 8.81 0.00 0.00 8.56 8.09 0.00 24 E1_Ae KnownBoundary 0 0.00 0.00 9.76 3.50 12.82 14.08 0.00 1.81 5.38 1.34 5.32 0.00 12.82 12.30 4.82 7.43 4.77 8.25 0.00 0.00 0.00 12.25 0.00 25 ER1g ExonRegion 0 0.20 2.03 7.99 3.21 4.08 6.55 1.86 1.81 3.35 4.40 6.67 4.95 8.26 8.62 8.08 3.89 14.46 5.37 0.30 1.87 0.21 9.62 2.73 26 E1c_E2a KnownJunction 0 0.00 2.50 7.24 4.33 0.00 0.00 3.75 4.52 0.00 7.20 7.53 17.56 12.34 4.94 8.90 7.01 4.77 6.51 0.00 2.88 0.00 8.51 3.67 27 I1_AR1 ActiveIntronRegion 0 0.00 1.36 0.00 2.73 0.00 3.67 1.77 1.73 1.24 1.15 0.00 4.33 0.00 0.00 0.00 0.99 0.00 0.00 15.93 0.00 0.00 0.00 0.00 28 ER2a ExonRegion 0 21.41 25.00 27.76 23.15 4.34 31.72 9.27 39.78 45.52 68.48 143.45 60.54 109.87 144.49 52.56 79.86 78.41 28.11 21.46 25.32 53.14 39.31 43.38 29 E2a_E3a KnownJunction 1 59.42 37.16 36.07 43.92 3.90 62.92 25.04 60.54 87.88 141.35 444.85 178.11 118.99 105.30 81.46 96.04 243.29 25.00 51.01 51.52 141.28 56.27 43.11 30 I2 Intron 1 3.16 2.63 2.26 4.00 7.54 5.42 9.21 3.63 2.90 2.31 3.92 62.07 6.01 4.30 4.97 6.28 9.20 1.86 2.42 4.37 1.37 1.64 2.65 31 I2_SR1 SilentIntronRegion 1 2.40 2.42 0.36 1.30 5.28 2.78 4.63 3.07 2.19 1.40 2.47 38.36 3.74 4.78 3.45 6.27 6.82 3.00 1.26 4.38 1.31 0.88 5.83 32 I2_AR1 ActiveIntronRegion 1 2.06 2.41 2.74 4.05 8.59 7.68 13.41 3.99 3.59 3.17 5.69 85.82 6.09 5.14 5.82 9.97 11.54 2.72 3.58 6.07 2.04 1.64 3.36 33 I2_SR2 SilentIntronRegion 1 4.50 2.94 2.42 4.86 7.26 4.08 6.59 3.47 2.46 1.77 2.66 46.60 6.69 3.34 4.65 2.66 7.71 0.65 1.67 2.70 0.72 1.91 0.90 34 ER3a ExonRegion 0 34.13 35.83 65.53 82.12 312.58 282.48 69.72 123.48 104.83 181.07 466.33 214.76 177.19 289.33 166.03 408.98 329.25 184.67 112.54 94.53 157.38 175.49 196.26 35 E3a_E4a KnownJunction 0 10.59 37.49 71.79 81.37 821.99 819.87 244.53 94.80 100.14 154.91 385.20 227.02 340.72 409.27 182.21 307.95 324.45 172.98 39.25 102.08 130.91 142.49 150.84 36 E3a_E5a KnownJunction 0 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 2.92 1.58 5.37 0.00 0.00 11.60 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 3.67 37 ER4a ExonRegion 0 62.00 79.61 93.62 85.97 117.85 171.79 97.57 135.97 109.73 185.88 368.09 257.30 163.62 376.74 171.06 266.86 294.11 114.42 73.47 70.73 181.42 156.50 127.52 38 E4a_E5a KnownJunction 0 268.34 97.42 135.39 106.45 112.90 175.47 117.65 178.01 182.72 238.94 551.98 292.60 253.55 610.34 336.36 547.80 424.59 210.38 165.37 115.56 274.48 331.95 258.99 39 I4 Intron 0 21.31 6.98 6.45 6.70 14.36 10.82 13.42 14.60 9.69 8.20 7.15 15.68 10.18 8.44 9.45 21.70 15.62 5.39 5.73 6.10 6.09 9.45 7.64 40 I4_SR2 SilentIntronRegion 0 26.45 9.86 7.96 7.68 16.06 14.02 17.23 16.51 11.31 7.67 7.77 22.27 11.90 8.77 10.24 22.92 17.30 5.76 6.42 5.76 4.08 11.98 8.35 41 E5_Aa NovelBoundary 1 73.64 29.80 10.17 12.09 49.75 48.72 63.90 29.82 16.98 13.86 16.79 73.97 13.64 14.60 28.68 102.11 23.00 27.32 8.66 8.44 5.56 12.92 20.74 42 ER5a ExonRegion 0 140.42 76.86 120.85 102.64 113.12 142.53 85.42 168.26 146.17 209.53 480.63 296.64 192.78 487.52 251.91 441.51 362.42 180.25 136.42 86.28 235.26 254.19 201.01 43 ER5b ExonRegion 0 65.27 77.00 80.69 75.08 135.33 245.90 128.32 121.60 101.11 150.20 361.17 223.56 136.33 401.45 179.68 297.67 302.43 132.38 78.43 76.32 216.12 146.89 123.09 44 E5b_E6a KnownJunction 0 39.34 59.73 93.96 77.78 166.55 298.63 129.49 126.51 102.86 147.02 333.61 141.65 80.35 305.85 218.93 282.75 230.11 167.22 63.81 70.24 203.62 142.61 115.84 45 ER6a ExonRegion 0 27.85 51.03 79.32 76.02 146.57 242.67 114.05 120.31 90.73 157.07 302.05 163.15 92.46 298.25 210.41 269.76 232.27 181.43 50.26 62.58 177.28 148.16 142.73 46 E6a_E7a KnownJunction 0 21.26 47.43 72.17 76.21 164.18 266.78 104.36 116.57 89.90 173.98 333.35 174.06 79.38 352.70 222.76 329.57 262.37 170.58 66.45 87.25 169.89 152.29 169.70 47 ER6b ExonRegion 0 27.51 36.60 75.97 71.55 141.81 248.48 73.48 132.23 83.37 168.59 299.60 155.86 63.32 317.52 213.24 266.01 247.57 169.07 70.08 62.77 182.91 142.72 174.73 48 E7_Aa NovelBoundary 0 38.23 0.00 6.39 1.80 56.54 64.17 31.75 6.00 4.98 3.57 0.00 18.91 0.00 29.49 19.78 46.48 34.32 10.07 9.60 12.78 7.85 5.94 8.37 49 ER7a ExonRegion 0 28.35 25.12 79.10 71.09 67.68 109.62 57.18 131.14 97.80 176.83 282.90 149.97 70.93 447.33 231.79 320.44 234.16 140.00 66.84 67.95 202.16 132.53 149.90 50 E7_Ab KnownBoundary 1 49.79 36.70 107.57 92.93 41.94 60.87 60.11 121.83 113.92 221.61 258.70 53.72 49.51 442.17 181.47 288.21 221.04 145.96 103.06 37.46 139.25 147.70 104.83 51 ER7b ExonRegion 1 65.94 50.16 85.18 72.20 81.61 123.22 83.90 128.19 98.33 186.21 333.62 47.62 36.20 263.94 162.14 203.90 271.31 130.05 68.16 54.64 189.66 121.54 110.95 52 E7_Da KnownBoundary 1 105.72 105.44 72.38 85.64 176.49 230.27 108.20 155.79 117.91 180.27 298.65 43.51 13.31 191.89 136.60 251.90 283.03 100.32 66.07 71.52 221.72 103.61 139.48 53 ER7c ExonRegion 1 82.02 79.56 69.47 66.76 182.70 260.16 142.63 112.30 102.42 154.59 300.11 44.74 78.46 415.43 209.40 287.51 249.07 93.65 73.96 59.78 148.91 108.93 124.16 54 E7_Db KnownBoundary 0 92.24 77.29 72.20 56.57 141.34 215.73 124.45 72.08 84.61 106.80 286.91 100.68 67.04 367.24 172.20 344.70 240.30 72.50 86.21 54.46 136.47 130.18 128.47 55 E7b_E7c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 3.44 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E7_Dc KnownBoundary 0 48.97 49.33 17.15 27.57 40.83 57.24 42.04 34.17 22.05 59.93 116.56 150.95 99.67 85.35 68.73 99.03 114.17 19.07 26.92 13.61 59.80 84.38 60.27 57 ER7d ExonRegion 0 69.37 71.29 59.98 56.56 90.83 143.75 88.19 67.03 74.52 121.44 239.57 124.11 85.98 262.84 130.40 253.62 226.84 63.64 63.35 42.08 121.69 135.43 116.81 58 ER7e ExonRegion 0 172.84 155.23 92.95 97.25 226.16 170.65 161.14 170.42 113.07 186.18 300.46 247.39 141.00 233.00 259.24 219.96 238.41 39.21 62.91 65.42 70.38 192.30 84.70 59 E7_Dd KnownBoundary 0 9.71 0.00 10.64 5.39 18.00 4.60 7.91 5.87 13.66 25.06 12.00 10.95 6.17 4.47 0.00 4.36 8.79 0.00 0.00 2.36 0.00 11.27 0.00 60 E7_De KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E7_Ac KnownBoundary 0 10.59 9.41 6.92 3.70 11.80 13.51 8.61 12.36 6.19 12.52 14.85 12.30 0.00 4.59 23.61 4.36 18.70 2.07 0.00 6.07 0.00 8.76 0.00 62 ER7f ExonRegion 1 16.93 8.13 24.51 6.81 24.08 20.17 18.54 22.47 17.29 51.61 34.79 38.97 42.21 22.74 49.32 5.94 33.01 1.85 0.00 14.89 0.00 18.75 0.00 63 ER7g ExonRegion 1 11.82 6.27 14.70 6.70 19.85 12.23 13.46 15.70 15.54 39.57 24.00 25.62 35.18 13.53 33.12 6.19 31.63 2.31 0.00 6.74 0.18 18.75 0.00 64 ER7h ExonRegion 0 15.34 11.82 7.74 4.44 25.40 8.91 5.11 11.40 8.93 11.29 15.12 23.50 7.50 5.32 15.54 16.67 15.15 8.23 0.97 4.94 0.02 6.06 3.49 65 ER7i ExonRegion 0 4.23 4.88 1.90 0.00 14.58 0.64 3.91 0.00 1.30 1.20 3.58 19.27 1.41 4.30 7.69 2.38 7.26 5.27 2.71 0.43 0.00 0.00 2.94 66 ER7j ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.00 1.65 0.00 0.00 0.86 0.48 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00