Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf102 Gene 0 8.16 5.52 12.12 5.39 14.09 23.30 7.82 15.54 18.89 13.68 2.65 3.89 4.82 5.01 10.73 6.22 8.49 4.38 12.55 2.78 14.98 17.36 16.80 2 354267 Transcript 0 7.78 0.00 0.00 0.92 23.77 32.28 7.91 2.57 1.26 4.19 1.89 0.00 2.40 0.49 11.81 2.00 0.00 1.42 0.00 5.89 1.43 4.31 0.00 3 315643 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 235532 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 356637 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 445843 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 433045 Transcript 0 1.03 0.33 0.00 0.66 0.00 0.00 0.43 0.42 0.30 0.56 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.35 0.00 0.00 1.43 8 495222 Transcript 0 1.59 0.68 1.02 0.57 2.45 2.75 0.99 2.02 3.19 1.82 0.48 0.72 0.00 0.95 0.00 0.00 1.10 0.92 1.59 0.35 2.94 2.60 2.94 9 475160 Transcript 0 2.26 1.28 1.71 2.34 4.85 15.70 4.72 5.02 5.74 2.40 0.00 0.00 3.05 0.45 1.74 0.00 0.00 1.32 0.18 2.04 1.76 1.49 4.29 10 468441 Transcript 0 1.00 0.39 2.25 0.96 6.85 2.96 1.26 2.44 3.66 2.27 0.00 0.34 0.00 0.38 1.81 0.00 0.00 0.26 0.00 0.20 0.84 0.79 0.84 11 471369 Transcript 0 5.03 2.68 2.35 4.81 4.52 5.18 2.87 6.60 5.19 4.47 0.02 1.53 1.33 0.55 4.59 1.33 0.06 0.12 3.93 0.01 5.01 3.90 7.99 12 IG28_AR5 ActiveIntergenicRegion 0 0.00 1.83 2.26 1.36 15.09 7.52 4.38 9.62 5.04 12.35 10.31 3.55 1.20 11.87 18.15 3.35 6.18 0.00 0.00 3.60 1.98 3.74 6.02 13 IG28_AR4 ActiveIntergenicRegion 0 0.00 3.39 4.90 2.73 26.38 8.65 4.03 12.10 8.65 19.50 19.97 0.41 4.69 16.63 17.82 5.94 3.93 0.00 1.06 5.88 4.41 2.88 11.33 14 IG28_AR3 ActiveIntergenicRegion 0 0.00 4.07 4.90 2.73 13.38 5.50 0.00 12.10 8.65 19.50 15.79 0.00 7.82 6.77 15.47 1.98 0.00 0.00 3.19 2.13 2.94 0.00 5.87 15 IG28_AR2 ActiveIntergenicRegion 0 0.00 4.07 4.90 2.73 13.38 0.46 0.00 8.64 8.65 18.21 11.60 0.00 4.69 4.87 10.52 0.00 0.00 0.00 3.19 2.13 1.10 0.00 4.77 16 ER1a ExonRegion 0 2.02 3.63 2.08 1.24 1.40 28.54 8.09 1.13 2.01 1.40 0.00 0.00 0.00 0.49 7.82 0.13 4.09 0.00 3.81 2.96 6.18 7.70 11.56 17 E1_Ab KnownBoundary 0 10.15 3.35 9.79 2.06 3.82 81.94 17.84 2.30 5.90 6.04 0.00 0.00 0.00 0.00 11.99 0.00 18.42 0.00 11.95 6.20 23.72 23.45 27.91 18 ER1b ExonRegion 0 4.48 1.92 6.61 1.03 5.03 12.99 4.25 10.32 10.25 8.63 1.41 0.00 1.33 2.84 8.59 3.96 9.12 1.66 10.29 2.89 16.30 5.59 9.90 19 E1a_E2a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 2.55 5.18 4.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 20 E1a_E4a KnownJunction 0 0.00 5.26 15.76 0.00 11.80 8.29 4.50 14.01 16.49 13.86 5.37 0.00 0.00 4.94 16.44 11.88 13.65 5.14 19.20 0.00 30.64 15.00 7.17 21 E2a_E4a KnownJunction 0 0.00 0.00 0.00 1.66 0.00 0.00 0.00 8.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 2.68 0.00 2.94 0.00 22 ER2a ExonRegion 0 0.00 0.00 1.23 1.00 0.00 0.00 0.09 6.11 3.75 2.83 0.00 0.00 0.00 0.11 0.10 0.00 0.11 0.80 2.87 2.13 0.22 1.18 0.59 23 ER3a ExonRegion 0 2.06 0.66 0.00 1.32 0.00 0.00 0.86 0.84 0.60 1.11 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.69 0.00 0.00 2.86 24 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E4_Aa NovelBoundary 0 6.67 0.00 0.00 0.00 0.00 0.00 4.15 1.64 0.00 2.28 0.00 0.00 0.00 0.00 19.41 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER4a ExonRegion 0 5.13 3.33 10.98 3.47 14.79 25.51 8.14 21.61 28.52 19.71 8.48 2.35 6.90 13.30 18.66 15.05 13.44 8.79 20.45 5.05 20.83 24.84 30.86 27 E4a_E5a KnownJunction 0 9.56 2.70 18.27 4.89 31.58 73.03 13.03 35.53 37.27 31.29 7.32 5.25 0.00 4.94 23.49 27.34 4.77 13.31 17.51 0.00 37.19 30.86 22.88 28 ER5a ExonRegion 0 15.46 11.84 16.67 7.49 19.77 47.91 11.77 26.02 46.88 20.51 8.51 5.64 6.00 12.69 25.90 17.02 23.52 11.82 20.04 4.99 34.07 34.02 25.45 29 E5_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.01 5.29 0.00 0.00 0.00 2.47 10.63 7.01 9.07 2.57 0.00 0.00 0.00 5.51 0.00 30 E5a_E6a KnownJunction 0 12.00 3.35 14.75 11.72 11.21 38.05 16.83 43.29 31.42 22.03 6.74 0.00 6.82 7.00 19.66 18.63 8.23 14.59 29.37 2.56 42.63 37.23 17.84 31 ER6a ExonRegion 0 16.36 11.52 14.76 8.45 13.71 48.79 7.52 27.40 38.94 26.05 4.80 10.00 11.46 14.88 23.75 20.29 26.69 10.68 21.28 3.23 40.48 46.07 27.01 32 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.91 3.36 3.01 2.26 0.00 7.14 11.89 4.45 0.00 4.21 0.00 0.00 3.13 3.15 6.06 0.00 33 E6a_E8b KnownJunction 0 19.48 12.63 12.12 7.62 35.57 41.28 9.72 20.91 36.14 17.00 5.00 6.15 0.00 5.24 0.00 0.00 16.18 10.74 15.53 5.56 30.70 38.64 39.86 34 ER7a ExonRegion 0 2.63 0.87 0.78 1.41 7.47 10.34 6.22 5.33 3.32 2.63 0.78 0.00 2.96 2.65 5.90 0.55 2.52 1.46 4.10 1.84 7.52 6.69 0.00 35 E7_Da KnownBoundary 0 24.82 0.00 0.00 2.00 56.03 76.72 20.23 8.54 6.60 9.54 2.11 0.00 6.82 2.47 13.35 4.36 0.00 2.03 0.00 12.98 2.97 9.12 0.00 36 ER7b ExonRegion 0 7.78 0.00 0.00 0.92 23.77 32.28 7.91 2.57 1.26 4.19 1.89 0.00 2.40 0.49 11.81 2.00 0.00 1.42 0.00 5.89 1.43 4.31 0.00 37 E7_Db NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 6.81 2.25 1.60 4.86 1.67 0.00 0.00 0.00 9.65 9.64 3.59 4.39 0.00 0.00 0.00 8.53 2.57 0.00 38 ER8a ExonRegion 0 3.17 1.36 2.04 1.14 4.91 5.50 1.99 4.03 6.38 3.63 0.97 1.44 0.00 1.89 0.00 0.00 2.20 1.85 3.19 0.71 5.88 5.21 5.87 39 ER8b ExonRegion 0 20.40 6.22 22.83 7.81 26.58 31.90 9.59 21.14 32.08 18.19 6.31 4.29 6.24 6.50 10.84 9.52 18.20 7.89 29.66 5.62 27.58 19.62 37.06 40 E8a_E9a KnownJunction 0 9.71 2.76 19.19 11.49 19.27 32.48 2.12 21.81 35.18 18.45 5.11 7.65 12.99 4.94 6.30 15.72 13.28 8.00 20.33 2.43 25.64 36.74 23.90 41 E9_Aa NovelBoundary 0 10.82 0.00 9.82 0.00 16.72 0.00 2.25 4.60 12.41 7.31 0.00 0.00 0.00 2.35 6.18 3.93 0.00 0.00 0.00 0.00 0.00 2.51 3.67 42 ER9a ExonRegion 0 6.27 9.28 26.13 8.28 30.44 56.85 12.25 28.71 30.89 26.42 5.12 9.69 13.43 9.42 13.27 11.18 17.12 11.27 32.53 0.85 28.73 35.21 22.39 43 E9_Ab KnownBoundary 0 0.00 15.00 39.21 8.89 32.00 62.58 13.91 27.31 33.62 37.10 4.58 18.01 0.00 7.00 4.45 8.37 24.22 6.26 18.17 3.26 40.83 39.43 30.99 44 ER9b ExonRegion 0 4.84 12.45 24.41 9.29 23.92 57.22 16.27 25.86 35.84 26.59 2.76 17.49 12.73 8.39 8.94 9.22 17.11 6.56 29.38 3.95 32.25 34.36 41.83 45 E9_Da NovelBoundary 0 0.00 2.70 0.00 0.00 0.00 11.24 0.00 4.27 4.46 4.08 2.11 0.00 6.33 0.00 4.45 0.00 3.93 0.00 0.00 0.00 3.15 0.00 12.04 46 E9a_E10a KnownJunction 0 14.22 11.64 13.81 14.82 34.80 60.53 17.44 19.43 43.17 22.38 2.11 17.86 12.82 4.59 6.30 4.36 16.74 10.32 48.28 6.01 20.02 31.96 35.00 47 ER10a ExonRegion 0 16.99 8.24 18.85 17.12 20.99 54.21 21.42 12.94 41.11 21.23 2.73 12.32 10.82 1.75 7.22 9.45 16.84 10.85 34.79 13.42 15.09 21.74 41.41 48 E10_Ab KnownBoundary 0 31.78 8.62 28.50 30.13 15.96 66.33 25.70 14.17 50.32 25.04 5.11 18.46 13.47 0.00 10.01 16.58 8.88 9.78 20.99 20.71 13.90 13.84 51.05 49 E10_Da NovelBoundary 0 10.45 3.03 0.00 5.26 0.00 0.00 8.13 4.56 9.46 1.67 0.00 0.00 6.17 0.00 14.09 0.00 3.55 2.57 0.00 0.00 5.19 2.57 0.00 50 E10a_E11a KnownJunction 0 9.56 9.14 40.39 13.58 38.88 50.26 9.98 13.14 21.90 36.64 4.79 24.76 6.82 10.71 25.84 4.36 13.56 5.76 25.51 2.62 26.63 20.76 54.55 51 E10a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER10b ExonRegion 0 15.57 6.89 33.40 17.45 17.69 47.92 12.56 11.10 32.15 28.56 5.99 16.90 8.77 5.34 21.43 10.64 13.31 10.13 22.61 9.47 20.90 19.29 51.25 53 I10_AR2 ActiveIntronRegion 0 10.65 1.53 3.02 2.18 4.64 11.22 4.02 3.66 5.41 4.05 0.61 0.00 0.00 2.11 7.11 3.47 0.00 2.65 0.00 1.21 0.00 3.68 2.99 54 I10_SR2 SilentIntronRegion 0 11.01 5.53 2.30 4.09 11.85 15.35 7.08 3.47 6.56 3.08 0.69 0.00 1.41 1.23 3.15 0.46 1.63 0.91 4.73 0.00 1.09 6.07 9.44 55 ER11a ExonRegion 0 19.55 16.99 27.69 14.27 30.46 31.36 9.20 27.53 34.43 31.08 3.95 9.90 7.21 8.78 17.58 7.89 17.99 5.64 32.23 4.76 22.41 34.93 29.91 56 E11_Da KnownBoundary 0 0.00 0.00 4.44 4.13 3.31 0.00 0.00 4.19 7.67 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.86 0.00 3.03 0.00 0.00 57 E11a_E13b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E11_Db KnownBoundary 0 0.00 2.83 0.00 0.00 0.00 0.00 0.00 1.89 6.80 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 4.35 59 E11b_E12b KnownJunction 0 20.52 24.47 5.80 8.76 35.82 47.70 30.74 25.71 26.45 30.11 7.16 6.30 13.64 2.47 8.90 16.24 16.64 4.27 17.51 3.26 19.89 18.98 33.80 60 ER11b ExonRegion 0 14.82 22.88 14.09 10.90 24.75 44.47 22.18 29.38 36.13 35.27 5.80 4.33 9.38 4.87 12.33 5.94 16.50 3.70 20.70 4.26 23.14 25.00 33.04 61 ER11c ExonRegion 0 2.26 1.28 1.71 2.34 4.85 15.70 4.72 5.02 5.74 2.40 0.00 0.00 3.05 0.45 1.74 0.00 0.00 1.32 0.18 2.04 1.76 1.49 4.29 62 E11_Dc NovelBoundary 0 10.22 4.87 0.00 3.06 7.64 13.63 18.11 5.42 5.03 4.46 0.00 0.00 0.00 2.47 4.45 0.00 0.00 0.00 3.48 0.00 5.44 7.53 10.41 63 ER12a ExonRegion 0 5.03 2.68 2.35 4.81 4.52 5.18 2.87 6.60 5.19 4.47 0.02 1.53 1.33 0.55 4.59 1.33 0.06 0.12 3.93 0.01 5.01 3.90 7.99 64 E12_Ab KnownBoundary 0 0.00 0.00 0.00 7.03 3.65 12.72 5.39 7.93 3.41 3.57 0.00 0.00 6.82 0.00 10.01 0.00 0.00 1.82 7.53 0.00 3.15 5.20 4.18 65 ER12b ExonRegion 0 30.47 14.17 23.65 12.91 33.13 59.99 25.39 42.11 29.04 27.22 2.30 13.54 14.14 9.15 22.15 11.42 11.68 6.42 18.30 3.99 36.76 30.92 38.22 66 E12a_E13a KnownJunction 0 10.08 8.88 43.02 11.75 12.56 36.80 22.35 34.09 23.73 23.93 2.68 12.15 0.00 16.19 24.11 11.96 8.98 0.00 8.94 0.00 15.20 48.68 23.90 67 E12a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 ER13a ExonRegion 0 7.52 7.52 30.01 9.49 23.79 27.77 16.25 31.47 27.49 30.83 1.84 7.04 11.87 10.12 17.16 11.21 9.43 8.70 11.90 2.64 13.14 45.11 23.95 69 E13_Ab KnownBoundary 0 17.56 17.23 26.11 9.52 16.13 14.88 15.77 46.41 30.96 45.53 7.37 6.30 12.66 12.24 6.30 16.83 4.39 9.78 31.53 0.00 17.61 30.80 39.27 70 ER13b ExonRegion 0 8.87 7.73 21.82 5.38 14.34 21.80 10.99 24.30 21.66 17.84 2.07 3.88 5.81 3.99 12.42 6.33 6.28 3.50 13.85 2.11 17.45 27.44 19.84 71 E13_Dc NovelBoundary 0 3.78 0.00 0.00 0.00 4.07 24.93 2.25 4.72 4.72 2.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 3.15 3.12 11.95 72 ER13c ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 3.44 0.00 0.00 0.00 0.00 5.80 0.00 0.00 1.85 0.00 0.00 0.00 0.00 2.94 73 ER13d ExonRegion 0 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.59 74 I13_SR1 SilentIntronRegion 0 1.64 3.13 3.34 2.35 9.27 10.10 3.06 7.68 16.31 8.41 0.37 0.00 0.37 0.00 3.78 0.29 0.00 2.12 5.82 1.02 2.54 4.21 5.37 75 I13_AR1 ActiveIntronRegion 0 2.06 1.59 1.16 3.99 4.37 8.72 1.49 7.76 14.50 9.41 0.00 0.00 0.00 0.62 3.16 0.00 0.54 1.39 5.21 0.73 2.33 2.72 4.95 76 ER14a ExonRegion 0 2.01 0.77 4.50 1.93 13.70 5.91 2.51 4.88 7.32 4.54 0.00 0.68 0.00 0.76 3.62 0.00 0.00 0.52 0.00 0.40 1.67 1.58 1.67