Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 S100PBP Gene 0 77.72 42.11 24.86 51.99 101.52 86.79 58.04 80.92 85.39 73.96 98.49 137.98 148.57 93.56 96.85 111.89 112.50 37.23 40.34 43.43 44.28 45.33 49.89 2 373476 Transcript 0 1.78 0.00 0.00 0.00 12.52 1.45 1.13 0.00 0.90 0.00 2.61 0.00 0.00 0.00 0.00 7.95 12.76 0.00 0.00 0.00 4.45 1.19 1.84 3 439419 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 373475 Transcript 0 166.66 77.25 50.62 92.22 188.47 161.58 76.47 157.62 132.23 132.16 114.73 138.76 114.58 92.49 154.35 86.06 96.63 26.79 40.77 56.02 41.56 58.65 42.09 5 398243 Transcript 0 2.12 0.00 0.00 0.00 2.68 0.00 3.97 4.32 0.00 2.87 1.93 4.33 0.00 4.06 5.80 2.97 1.65 4.62 0.00 0.00 0.00 2.08 0.00 6 356689 Transcript 1 32.66 13.31 7.26 17.65 40.45 18.63 22.08 21.10 19.66 12.10 13.01 36.26 62.45 16.74 41.93 47.78 26.83 6.94 13.17 17.09 7.36 11.08 14.94 7 477248 Transcript 0 0.00 0.00 0.00 0.00 0.00 1.45 1.10 0.00 2.51 0.57 5.03 0.00 0.00 0.54 2.23 3.99 7.05 0.31 0.00 0.00 0.00 0.00 0.00 8 482212 Transcript 0 1.89 5.47 1.58 1.42 2.70 8.44 2.89 0.84 3.83 5.52 6.99 0.00 0.00 0.61 0.00 4.36 0.00 7.52 0.16 5.09 3.13 0.00 0.00 9 474103 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 1.79 0.00 7.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 475486 Transcript 0 67.43 6.29 6.86 18.17 30.69 18.74 20.05 28.02 25.39 19.56 28.53 62.24 82.25 32.33 59.41 59.72 33.11 3.63 11.57 12.16 13.16 17.71 19.44 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 3.12 0.00 13 ER1b ExonRegion 0 0.85 0.00 0.00 0.00 3.08 2.84 0.46 0.00 1.30 0.46 0.29 0.00 0.00 0.00 1.16 8.47 0.33 0.00 0.48 0.00 2.75 0.00 0.00 14 E1_Ad KnownBoundary 0 3.78 0.00 0.00 0.00 0.00 8.52 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 6.30 21.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1_Da KnownBoundary 0 9.56 0.00 1.74 0.00 4.33 16.69 1.90 0.00 4.40 1.67 23.64 0.00 0.00 0.00 14.22 29.31 17.58 1.91 13.74 0.00 29.47 12.00 44.64 16 E1a_E4a KnownJunction 0 3.56 0.00 0.00 0.00 25.04 2.90 2.25 0.00 1.79 0.00 5.21 0.00 0.00 0.00 0.00 15.89 25.53 0.00 0.00 0.00 8.90 2.39 3.67 17 ER1c ExonRegion 0 5.23 0.00 0.00 0.00 12.75 16.40 1.71 0.00 3.78 1.28 16.37 0.00 0.00 1.05 10.07 36.71 12.23 0.00 5.62 0.00 23.07 5.88 13.82 18 ER1d ExonRegion 0 10.88 0.00 0.00 0.00 17.58 18.34 2.65 0.00 5.82 2.29 24.02 0.00 0.00 11.14 23.62 50.10 26.41 0.00 6.37 1.82 34.31 10.72 29.37 19 ER1e ExonRegion 1 23.58 10.27 1.55 4.95 18.59 58.71 33.61 13.86 21.67 20.56 60.46 3.11 10.45 50.86 50.80 133.90 111.54 14.65 26.60 29.38 55.71 31.65 82.38 20 E1_Ae KnownBoundary 1 61.20 30.06 3.64 18.25 54.50 160.99 88.63 48.71 61.52 66.99 101.34 6.00 25.65 57.10 54.14 198.75 210.00 79.67 80.10 88.84 84.14 56.03 137.18 21 ER1f ExonRegion 1 44.25 25.33 5.46 9.58 24.97 81.24 38.68 32.42 52.06 50.81 78.66 5.51 20.61 40.60 31.56 100.69 131.84 30.85 31.08 56.48 47.81 27.34 67.19 22 E1b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 4.60 0.00 10.06 0.00 0.00 0.00 4.45 4.02 13.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1b_E4a KnownJunction 0 49.93 17.76 6.21 8.39 24.70 32.37 29.81 29.33 64.76 55.42 71.07 5.55 20.45 17.25 19.78 73.48 79.38 29.02 13.55 26.97 41.70 13.72 40.04 24 ER2a ExonRegion 0 0.00 1.53 0.00 0.85 2.34 4.68 0.26 0.00 0.00 0.11 6.81 0.00 0.00 1.22 0.00 0.00 0.00 1.15 0.32 3.72 0.83 0.00 0.00 25 E2_Ab KnownBoundary 0 0.00 3.35 0.00 1.83 8.06 20.27 7.64 6.86 8.71 2.95 22.64 0.00 0.00 4.83 0.00 4.19 7.95 11.28 0.00 9.72 2.78 0.00 0.00 26 ER2b ExonRegion 0 0.41 2.84 0.71 1.24 2.73 8.07 5.10 1.82 6.27 10.26 8.25 0.04 0.00 1.44 0.94 3.00 6.36 14.25 18.23 6.76 7.43 1.89 0.00 27 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 1.79 0.00 7.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E2a_E4a KnownJunction 0 3.78 9.41 3.16 2.00 3.06 12.21 5.52 1.68 7.67 10.93 7.16 0.00 0.00 0.00 0.00 8.72 0.00 13.89 0.00 6.46 5.44 0.00 0.00 29 I2 Intron 0 2.33 0.84 0.75 2.23 4.78 9.33 6.56 6.37 7.34 9.17 10.63 7.18 9.94 15.31 14.73 17.57 25.86 12.24 6.13 4.09 9.69 2.00 4.44 30 I2_SR1 SilentIntronRegion 0 2.82 0.55 0.49 3.89 5.78 13.03 7.57 7.30 9.80 10.86 15.06 11.32 8.34 20.45 18.67 24.22 32.97 18.71 7.97 4.76 12.52 2.25 5.48 31 E3_Aa NovelBoundary 0 19.19 10.06 1.21 6.09 19.69 2.84 6.14 8.71 12.21 22.78 27.32 36.76 21.10 21.78 40.05 36.66 79.20 9.87 9.13 11.63 11.92 0.00 21.43 32 ER3a ExonRegion 0 9.11 3.02 1.81 6.73 16.82 7.75 17.27 10.06 11.86 12.07 28.13 42.83 29.72 25.18 17.17 34.24 40.39 13.35 10.45 5.26 9.82 5.52 6.82 33 ER3b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.41 1.15 0.00 0.00 0.00 1.08 0.00 3.96 1.10 0.62 0.00 0.00 0.00 0.00 0.00 34 I3 Intron 0 5.83 2.62 2.77 5.84 11.15 5.68 12.65 6.25 8.46 6.03 9.05 28.74 27.94 14.16 11.58 13.51 17.73 4.84 4.83 4.65 3.00 4.27 4.14 35 I3_AR1 ActiveIntronRegion 0 5.03 3.84 3.45 6.35 12.29 4.38 12.32 8.20 15.55 10.69 18.40 59.46 52.36 38.88 21.82 22.17 43.91 15.16 8.63 11.21 11.74 2.83 5.46 36 I3_SR1 SilentIntronRegion 0 7.49 2.83 4.53 6.77 12.86 4.06 13.80 8.74 9.21 5.97 10.55 27.06 30.86 22.71 15.70 17.11 24.65 5.77 7.66 5.90 2.30 4.44 5.49 37 E4_Aa NovelBoundary 0 15.56 12.56 0.00 11.45 4.33 12.55 10.20 8.09 14.03 14.34 17.90 31.51 41.88 12.30 4.45 27.34 35.44 17.87 8.28 6.52 3.15 3.00 4.35 38 ER4a ExonRegion 0 35.44 13.78 16.95 14.34 58.23 37.38 20.90 53.29 77.33 75.95 182.54 93.51 92.76 91.63 65.09 133.01 226.21 51.14 53.61 46.95 117.72 38.91 59.11 39 E4a_E5a KnownJunction 0 12.67 12.89 23.24 27.54 49.32 36.17 20.93 107.74 131.42 115.29 327.56 165.80 122.23 161.58 154.52 264.38 319.68 97.00 90.83 107.13 141.90 58.97 124.12 40 ER5a ExonRegion 0 63.94 39.14 28.76 55.90 93.54 74.34 57.49 95.69 122.97 103.30 231.62 233.95 218.76 199.66 134.13 246.43 279.71 94.98 74.10 81.25 105.75 81.42 109.95 41 E5_Da KnownBoundary 0 93.72 42.76 62.89 110.94 158.40 142.82 128.03 150.78 121.90 147.53 288.18 285.39 288.46 260.88 177.51 254.80 392.24 60.65 109.84 99.90 74.87 148.80 82.55 42 ER5b ExonRegion 0 88.14 57.62 44.29 80.87 130.87 106.29 108.15 121.31 152.78 136.13 268.64 415.97 362.21 247.73 160.04 240.94 303.40 65.46 86.96 82.88 93.05 94.88 95.73 43 E5b_E6a KnownJunction 0 77.27 48.22 35.75 27.67 126.99 108.86 61.56 100.47 94.73 118.35 221.53 236.93 304.53 194.13 161.82 125.86 230.39 65.12 53.18 95.43 51.46 76.24 61.46 44 E5b_E6b KnownJunction 0 28.23 40.98 10.32 28.80 39.30 61.84 38.77 28.05 57.61 21.19 72.44 129.34 97.72 54.62 36.34 50.24 62.74 4.48 28.14 33.36 35.65 27.19 15.02 45 E6_Ab NovelBoundary 0 22.89 2.83 0.00 5.59 7.30 24.42 18.86 0.00 1.53 0.00 24.90 0.00 20.29 0.00 15.95 22.05 40.21 1.78 0.00 19.81 2.66 18.43 3.67 46 ER6a ExonRegion 0 69.32 49.82 32.17 30.66 102.35 111.86 78.11 98.09 110.85 114.69 223.25 329.04 345.89 213.17 169.72 161.24 252.52 69.29 63.71 89.89 58.95 77.09 80.02 47 ER6b ExonRegion 0 70.12 69.36 37.22 56.90 112.35 140.88 90.90 111.23 149.84 123.85 291.89 498.35 561.26 280.80 210.46 285.92 338.87 104.19 66.82 85.78 99.27 108.05 113.25 48 E6a_E7a KnownJunction 0 70.83 66.96 54.20 70.55 97.54 131.46 95.97 128.97 169.36 143.15 303.13 506.57 373.51 335.45 295.69 268.56 332.30 108.28 79.63 69.80 138.38 108.08 163.81 49 E6a_E9a NovelJunction 0 14.22 13.29 23.98 12.62 3.31 15.73 29.01 33.52 12.96 6.31 2.11 5.85 12.34 2.12 0.00 9.91 10.57 17.95 7.34 17.45 2.35 7.04 9.90 50 ER7a ExonRegion 0 82.54 65.62 56.14 60.81 158.49 100.05 115.50 109.16 151.66 137.18 319.67 439.44 384.45 224.30 193.66 249.20 324.41 116.78 91.15 88.56 143.69 85.89 136.50 51 E7a_E8a KnownJunction 1 10.89 6.18 1.83 6.13 43.29 2.16 1.68 11.01 19.76 7.20 15.90 24.31 33.11 2.30 44.50 28.45 32.07 0.00 4.61 2.81 0.00 5.57 8.11 52 E7a_E10b KnownJunction 0 62.68 52.16 37.85 41.39 93.21 93.64 27.91 79.85 126.73 133.56 197.58 198.06 137.00 182.24 134.74 139.96 234.22 80.71 79.91 54.07 124.48 64.48 75.63 53 ER7b ExonRegion 0 2.12 0.00 0.00 0.00 2.68 0.00 3.97 4.32 0.00 2.87 1.93 4.33 0.00 4.06 5.80 2.97 1.65 4.62 0.00 0.00 0.00 2.08 0.00 54 I7 Intron 1 15.19 7.60 4.93 15.60 23.56 14.69 24.54 11.69 17.03 11.05 9.34 48.64 74.50 12.25 26.03 37.45 26.33 4.10 8.97 16.21 8.17 5.69 10.36 55 I7_SR1 SilentIntronRegion 0 16.88 8.74 5.60 15.94 23.88 13.82 25.20 12.04 17.97 11.66 10.67 52.25 78.07 12.74 28.73 44.00 28.38 3.76 10.02 16.74 9.75 5.56 10.14 56 I7_AR1 ActiveIntronRegion 1 10.86 4.42 3.09 15.97 24.83 19.17 24.69 11.62 15.47 10.05 5.69 41.04 69.63 11.78 19.27 18.58 21.88 5.68 6.24 16.04 3.54 6.69 12.17 57 ER8a ExonRegion 1 4.23 0.00 1.72 4.36 23.55 1.83 1.59 4.15 11.61 4.36 7.35 18.18 25.33 6.82 26.11 18.43 21.79 0.00 3.19 2.98 0.00 2.50 0.59 58 ER8b ExonRegion 1 14.54 10.26 2.08 2.67 25.48 6.46 8.06 2.78 6.87 2.59 9.58 12.05 13.87 10.45 33.05 29.08 16.65 2.89 7.48 14.34 5.08 6.07 7.53 59 I8 Intron 1 9.52 6.10 0.00 0.00 18.06 5.50 6.91 0.00 1.36 1.26 2.90 60.80 125.32 6.23 26.88 6.69 5.00 0.00 0.00 0.00 0.00 12.50 2.20 60 I8_SR1 SilentIntronRegion 1 9.52 6.10 0.00 0.00 18.06 5.50 6.91 0.00 1.36 1.26 2.90 60.80 125.32 6.23 26.88 6.69 5.00 0.00 0.00 0.00 0.00 12.50 2.20 61 E9_Aa NovelBoundary 1 93.65 76.83 46.42 44.62 84.89 50.48 136.68 65.96 49.04 51.36 40.85 195.81 162.49 212.08 111.87 230.11 177.28 57.00 62.87 105.08 53.62 27.25 105.34 62 ER9a ExonRegion 1 50.79 16.36 12.45 32.64 55.43 30.80 36.10 39.43 32.44 21.61 16.44 60.48 111.04 23.02 50.82 66.49 37.02 11.00 18.86 19.84 9.65 16.09 22.34 63 I9 Intron 0 22.00 6.92 3.07 15.92 26.62 13.02 20.32 17.81 16.34 13.78 12.87 54.89 82.61 18.34 31.80 39.46 25.76 3.69 4.12 7.63 5.99 10.59 8.58 64 I9_AR2 ActiveIntronRegion 0 22.05 10.18 3.71 23.62 23.90 11.41 14.87 21.60 15.19 13.64 9.67 61.63 82.29 20.48 28.63 40.62 17.42 3.48 6.89 10.65 6.56 9.58 7.55 65 I9_AR3 ActiveIntronRegion 0 42.23 10.57 3.67 29.03 37.10 15.80 29.17 28.23 21.47 22.33 22.05 55.91 123.27 25.55 47.73 62.93 50.75 8.25 7.34 11.60 12.13 12.58 15.36 66 I9_SR4 SilentIntronRegion 1 22.69 7.75 2.51 18.20 31.57 8.01 18.17 15.11 16.37 12.06 10.13 39.64 62.18 13.96 32.88 36.37 30.26 3.12 3.49 10.07 2.97 13.30 7.77 67 I9_AR4 ActiveIntronRegion 0 14.71 4.40 2.91 10.29 27.01 17.36 26.57 16.64 17.61 14.47 13.31 72.65 87.79 19.39 27.27 34.83 18.49 2.04 2.32 5.40 4.75 10.87 7.71 68 I9_SR5 SilentIntronRegion 0 22.69 7.49 4.36 10.79 26.71 15.16 16.78 16.71 18.28 11.82 13.55 61.04 89.99 20.35 40.90 43.92 26.78 3.96 4.01 6.54 6.40 12.35 8.53 69 E10_Aa NovelBoundary 1 70.98 6.71 8.34 15.78 19.61 16.75 22.48 26.45 40.28 22.08 19.69 38.11 93.01 39.26 22.50 55.20 48.34 4.10 0.00 0.00 10.44 15.43 12.12 70 ER10a ExonRegion 0 67.43 6.29 6.86 18.17 30.69 18.74 20.05 28.02 25.39 19.56 28.53 62.24 82.25 32.33 59.41 59.72 33.11 3.63 11.57 12.16 13.16 17.71 19.44 71 E10_Ab KnownBoundary 0 55.71 3.29 7.04 23.14 48.64 19.31 20.89 35.73 14.61 13.57 20.95 66.17 61.52 40.73 70.46 94.51 34.41 10.78 28.61 11.76 16.74 11.21 11.87 72 ER10b ExonRegion 0 129.96 95.62 49.20 69.38 209.60 195.50 96.80 113.62 150.71 135.41 284.27 422.60 379.14 276.79 263.05 268.48 269.99 140.20 90.87 85.40 192.25 103.03 121.92 73 E10a_E11a KnownJunction 0 98.76 86.23 36.01 41.95 207.89 128.11 98.66 54.75 84.11 74.84 128.77 316.00 276.44 226.68 289.51 149.70 141.37 74.37 54.87 44.81 107.80 57.50 80.07 74 E11_Aa NovelBoundary 0 27.34 3.35 3.02 4.13 40.49 29.02 22.79 13.64 4.75 5.02 7.69 18.76 7.79 9.71 10.75 7.52 8.23 2.57 0.00 6.07 5.62 0.00 7.00 75 ER11a ExonRegion 0 132.88 106.63 39.83 73.43 164.00 150.41 87.10 120.29 152.65 144.95 205.71 288.75 241.11 222.06 140.17 199.86 220.81 84.34 84.67 65.92 126.30 80.52 92.28 76 E11_Da KnownBoundary 1 127.87 153.92 34.53 81.71 309.85 203.52 161.06 147.21 129.69 131.38 163.67 238.28 367.02 215.49 76.02 222.93 178.68 60.77 64.94 79.58 71.72 67.30 107.56 77 ER11b ExonRegion 0 86.15 63.33 28.88 71.68 144.16 146.84 83.55 111.53 128.14 105.91 117.82 148.44 165.58 125.74 119.21 128.95 129.66 54.20 53.39 59.46 51.40 65.02 68.57 78 E11_Db KnownBoundary 1 135.43 56.31 66.91 145.57 128.10 146.96 80.51 180.36 177.17 158.16 109.92 139.40 177.10 57.39 144.63 119.54 75.83 40.50 67.95 57.91 22.98 81.62 52.67 79 ER11c ExonRegion 0 166.66 77.25 50.62 92.22 188.47 161.58 76.47 157.62 132.23 132.16 114.73 138.76 114.58 92.49 154.35 86.06 96.63 26.79 40.77 56.02 41.56 58.65 42.09