Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC9A1 Gene 0 29.03 5.80 27.53 15.05 20.48 18.40 14.58 31.02 37.48 36.19 60.54 26.39 33.49 50.51 57.86 49.70 45.84 19.15 18.08 10.46 268.93 138.56 185.46 2 374084 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.37 1.18 1.02 3 263980 Transcript 0 35.40 4.15 29.89 10.63 34.73 24.83 19.99 31.77 39.31 48.84 86.73 24.51 36.27 74.62 71.25 70.56 84.79 22.32 32.25 14.18 368.37 166.27 267.48 4 374086 Transcript 0 14.18 14.11 5.51 3.19 15.18 7.44 17.26 4.93 8.86 6.14 6.64 13.55 16.66 12.71 22.57 15.01 13.88 8.92 9.37 20.26 15.26 10.74 27.36 5 374089 Transcript 0 4.04 1.17 4.30 1.92 2.95 2.48 2.53 4.48 3.44 2.48 1.85 1.94 0.32 2.75 4.82 3.82 3.21 2.37 1.65 1.40 12.05 7.37 14.22 6 447808 Transcript 0 0.52 0.31 3.05 1.05 0.56 2.46 0.25 0.62 2.84 2.03 1.68 1.06 1.06 2.36 5.15 4.26 2.74 2.20 0.06 0.12 11.52 5.31 9.42 7 490329 Transcript 0 0.00 0.00 4.55 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 11 E2a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 4.35 12 E3_Aa NovelBoundary 1 3.11 0.00 1.51 1.96 0.00 2.56 4.20 21.03 22.86 20.09 47.49 6.15 20.45 37.08 21.26 7.60 45.35 17.70 8.09 8.76 229.50 29.82 89.63 13 ER3a ExonRegion 0 5.60 1.66 8.49 4.11 6.39 15.48 6.68 20.98 28.68 32.52 56.84 30.87 32.29 46.41 45.34 45.25 55.42 19.48 20.83 11.55 244.80 94.58 194.70 14 E3_Ab KnownBoundary 0 10.22 0.00 16.00 11.95 14.01 27.60 26.23 16.68 51.97 36.94 76.34 38.11 48.21 64.10 23.12 35.38 68.63 15.21 13.46 16.04 334.09 112.91 145.29 15 ER3b ExonRegion 0 9.94 3.17 18.94 11.10 13.12 18.99 14.70 36.36 53.49 37.36 91.87 54.11 64.29 81.82 50.81 49.75 73.27 29.25 32.24 14.95 378.87 169.42 212.45 16 E3_Ac KnownBoundary 1 6.52 3.03 12.51 10.29 21.22 33.73 6.54 30.15 50.38 40.72 65.28 38.56 99.02 69.93 46.60 47.25 45.63 22.59 32.85 8.37 365.10 151.25 214.86 17 ER3c ExonRegion 0 11.25 5.45 20.74 12.16 15.03 18.58 15.37 37.72 48.50 43.44 69.81 46.50 48.17 73.01 68.89 52.11 53.49 29.10 25.78 16.17 350.95 192.26 216.91 18 E3a_E4a KnownJunction 0 14.00 0.00 10.97 17.45 0.00 21.07 11.70 43.00 48.93 38.14 90.13 41.56 46.43 62.81 98.03 74.17 31.42 17.78 63.53 8.88 363.19 242.91 272.99 19 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 2.20 4.17 0.00 21 E4_Aa NovelBoundary 0 22.74 0.00 3.58 1.66 3.57 0.00 0.00 5.09 1.27 2.85 2.68 0.00 5.68 0.00 0.00 7.52 0.00 0.00 0.00 0.00 11.00 8.45 8.71 22 ER4a ExonRegion 0 10.15 3.84 10.32 10.37 14.22 13.82 12.65 37.45 45.88 30.92 64.29 37.44 45.60 59.58 75.81 60.93 37.84 16.87 28.31 9.65 341.82 158.73 198.11 23 E4_Da KnownBoundary 0 10.00 6.38 9.61 6.73 23.43 12.32 12.10 35.94 54.31 24.47 52.49 38.71 33.44 59.80 56.00 43.07 60.12 17.08 25.98 13.81 362.14 99.63 154.68 24 ER4b ExonRegion 0 14.87 7.19 27.21 14.95 15.64 13.14 14.00 21.74 40.82 34.08 67.07 36.04 40.34 59.37 69.32 58.15 44.38 21.97 21.79 12.76 320.71 165.97 204.84 25 E4b_E5a KnownJunction 0 10.37 5.79 51.83 25.11 19.52 38.56 9.10 30.81 72.13 63.34 87.18 58.82 101.94 45.56 61.93 79.55 77.23 35.98 8.94 6.39 435.04 258.28 212.98 26 ER5a ExonRegion 0 21.18 5.67 42.11 21.72 25.99 26.97 17.50 40.08 61.40 72.87 94.35 48.28 80.05 69.65 85.65 75.61 75.89 31.48 28.52 17.23 433.42 233.41 296.76 27 E5a_E6a KnownJunction 0 33.19 6.38 49.02 24.81 16.47 25.04 27.29 39.39 66.15 80.26 57.07 38.71 59.90 101.54 85.30 92.28 60.21 55.22 38.31 21.99 337.12 296.31 410.94 28 ER6a ExonRegion 0 24.35 6.87 26.35 16.38 28.52 31.97 16.87 30.37 55.81 57.70 93.35 40.81 73.56 69.73 87.54 69.15 57.33 33.07 31.28 12.18 433.19 214.03 295.55 29 E6a_E7a KnownJunction 0 20.45 3.35 28.33 14.35 34.21 27.48 18.37 21.69 48.29 42.50 84.71 25.21 49.67 68.99 84.80 75.19 43.57 23.84 44.80 6.07 339.16 212.97 245.08 30 ER7a ExonRegion 0 31.58 4.96 34.94 16.52 32.11 31.67 19.77 38.83 50.19 47.58 106.23 30.48 38.24 76.53 91.41 81.17 77.92 27.00 28.26 14.40 412.60 219.08 272.12 31 E7_Da KnownBoundary 0 15.48 0.00 1.66 1.93 3.65 11.53 0.00 8.50 0.00 1.58 1.95 0.00 8.28 0.00 0.00 0.00 8.32 5.80 0.00 0.00 22.12 2.33 12.38 32 E7a_E8b KnownJunction 0 65.20 6.64 51.30 17.15 63.07 34.18 33.30 42.55 49.94 65.17 116.61 18.16 40.26 102.83 97.16 95.87 114.17 25.16 43.67 16.81 491.93 237.95 340.26 33 ER7b ExonRegion 0 14.18 14.11 5.51 3.19 15.18 7.44 17.26 4.93 8.86 6.14 6.64 13.55 16.66 12.71 22.57 15.01 13.88 8.92 9.37 20.26 15.26 10.74 27.36 34 E8_Aa NovelBoundary 0 6.45 0.00 3.99 3.86 7.64 2.90 0.00 17.95 2.78 2.82 0.00 6.30 0.00 4.94 8.90 0.00 0.00 2.40 0.00 2.49 2.59 0.00 11.61 35 ER8a ExonRegion 0 4.04 1.17 4.30 1.92 2.95 2.48 2.53 4.48 3.44 2.48 1.85 1.94 0.32 2.75 4.82 3.82 3.21 2.37 1.65 1.40 12.05 7.37 14.22 36 E8_Ab KnownBoundary 0 14.52 0.00 1.39 0.00 4.24 5.45 0.00 5.79 3.59 4.92 2.47 0.00 0.00 4.89 8.90 8.12 4.58 5.76 0.00 0.00 6.05 10.41 4.10 37 ER8b ExonRegion 0 39.36 4.52 41.88 15.07 37.49 49.43 16.41 35.81 54.30 54.77 95.34 38.09 59.55 80.77 97.47 71.46 102.40 21.55 19.47 17.12 463.18 243.75 299.47 38 E8a_E9b KnownJunction 0 25.63 15.66 36.60 13.38 32.60 39.86 12.81 37.01 52.60 45.18 75.81 35.86 62.98 95.65 104.09 104.42 102.29 28.69 4.71 3.26 392.10 276.78 317.38 39 ER9a ExonRegion 0 0.52 0.31 3.05 1.05 0.56 2.46 0.25 0.62 2.84 2.03 1.68 1.06 1.06 2.36 5.15 4.26 2.74 2.20 0.06 0.12 11.52 5.31 9.42 40 E9_Ab KnownBoundary 0 0.00 0.00 3.49 3.10 0.00 7.84 0.00 0.00 4.28 1.53 0.00 0.00 0.00 2.47 0.00 3.50 4.58 2.57 0.00 0.00 12.36 0.00 7.94 41 ER9b ExonRegion 0 23.55 7.73 44.88 17.33 21.98 22.92 15.34 52.13 55.60 53.86 69.81 52.14 34.57 73.87 114.27 94.13 65.55 24.68 25.89 13.28 377.50 294.58 258.42 42 E9a_E10a KnownJunction 0 25.12 3.29 45.56 22.84 39.05 16.58 18.64 75.99 59.52 63.58 99.03 56.57 6.82 60.16 112.99 96.04 90.70 21.31 28.33 18.09 418.85 292.82 257.37 43 ER10a ExonRegion 0 29.13 5.25 41.08 24.55 21.08 23.39 16.21 52.87 56.75 49.20 94.97 37.92 42.72 69.26 87.19 69.47 78.88 21.60 18.82 8.57 412.17 234.76 257.24 44 E10a_E11a KnownJunction 0 91.05 11.71 41.78 29.43 44.48 44.97 45.53 69.37 67.82 51.28 124.93 25.81 32.47 101.95 156.62 98.69 116.04 37.39 33.22 9.08 477.11 343.15 313.28 45 ER11a ExonRegion 0 41.24 4.67 47.12 32.41 25.66 25.71 14.41 51.28 50.74 48.58 98.39 38.85 44.25 69.72 88.63 74.41 79.34 24.81 21.38 9.62 393.66 196.38 275.02 46 E11a_E12a KnownJunction 0 51.19 9.27 39.47 28.37 23.01 27.54 18.81 54.26 47.51 60.33 95.18 25.81 66.72 38.73 89.25 39.90 79.94 26.32 12.61 10.67 370.85 220.56 220.75 47 ER12a ExonRegion 0 40.90 5.86 37.66 26.60 18.60 21.09 15.84 49.40 45.70 54.46 88.10 19.78 26.25 57.39 81.12 56.79 66.37 22.17 11.49 8.47 367.44 168.44 202.25 48 E12a_E13a KnownJunction 0 55.42 11.51 51.83 35.09 8.32 28.73 20.89 34.91 40.68 54.66 81.28 11.70 13.15 49.91 73.06 55.97 82.37 33.12 4.33 11.95 362.45 197.66 258.74 49 ER13a ExonRegion 1 39.37 3.98 42.97 22.61 16.27 25.92 11.10 34.88 39.47 56.92 95.51 16.61 29.17 75.09 81.39 82.24 82.75 28.42 14.71 9.06 421.06 179.87 229.30 50 E13a_E14a KnownJunction 0 41.27 0.00 55.20 22.14 15.45 7.72 11.31 35.24 59.14 60.17 86.18 45.16 41.56 68.40 85.30 44.43 82.00 27.44 17.41 11.31 411.87 188.78 255.06 51 ER14a ExonRegion 0 23.35 1.35 41.99 25.26 14.75 21.39 12.37 36.38 47.28 53.04 77.73 25.75 27.17 64.06 85.29 62.50 68.96 18.82 17.77 10.12 341.42 147.01 213.23 52 E14_Da KnownBoundary 0 24.45 9.34 40.09 15.68 23.26 16.24 9.76 35.73 44.62 50.98 58.38 32.86 12.99 66.93 83.94 32.04 38.71 20.27 4.80 8.56 207.45 141.33 204.79 53 ER14b ExonRegion 0 54.58 7.75 34.52 14.97 26.73 19.30 17.43 38.05 40.09 39.10 56.81 13.32 11.86 55.89 65.83 50.96 42.93 19.28 13.09 9.43 287.42 130.97 184.65 54 E14_Ab KnownBoundary 1 119.06 9.47 78.83 47.75 76.99 73.14 39.22 93.65 78.70 72.61 93.23 42.31 39.12 60.27 95.80 136.29 46.38 46.51 30.21 9.46 413.97 316.76 573.90 55 ER14c ExonRegion 0 106.43 13.15 71.21 43.94 59.82 38.70 36.64 77.43 76.64 74.49 124.64 44.72 74.98 90.14 92.87 113.04 75.86 35.87 43.71 13.61 485.86 307.13 436.33 56 E14_Db KnownBoundary 0 53.42 0.00 52.81 32.50 84.13 35.95 30.03 51.84 51.97 43.81 79.91 42.91 83.11 66.98 136.47 69.30 63.86 17.62 24.38 18.60 408.16 146.16 272.22 57 E14b_E14c KnownJunction 0 0.00 0.00 4.55 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER14d ExonRegion 0 46.35 5.56 43.57 20.63 42.08 18.04 14.20 45.25 38.83 35.64 61.92 29.49 36.30 57.19 65.00 46.73 28.72 17.50 9.43 5.47 287.83 116.51 190.70 59 E14_Ac KnownBoundary 0 45.34 2.70 17.92 12.39 18.85 9.94 2.25 32.04 26.79 20.87 44.85 12.00 12.82 36.67 30.78 40.84 19.17 12.52 9.04 6.52 188.05 159.08 114.30 60 ER14e ExonRegion 0 40.19 5.95 23.41 11.75 15.41 21.20 16.33 19.45 20.45 18.26 29.21 7.32 12.85 14.88 31.00 19.05 15.42 4.01 3.95 2.27 116.83 73.61 76.67 61 ER14f ExonRegion 0 0.00 0.00 0.00 0.00 2.68 3.67 0.00 0.00 0.00 0.00 1.93 4.33 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 4.41 6.25 5.87