Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 THRAP3 Gene 0 276.87 165.91 103.87 144.13 331.99 289.06 263.21 265.20 208.02 343.67 472.09 413.44 363.83 578.88 388.68 543.46 524.51 157.85 147.57 129.37 292.24 305.90 302.01 2 354618 Transcript 0 220.66 132.08 98.74 143.69 350.24 418.13 328.94 261.94 217.39 361.00 461.15 565.48 475.09 610.43 412.15 519.77 515.97 183.55 147.26 128.43 298.02 279.70 291.58 3 486352 Transcript 0 4.90 5.38 2.56 3.05 2.82 1.00 2.94 5.89 18.33 14.42 13.30 5.31 2.58 2.05 8.47 12.64 11.37 14.07 8.19 3.23 8.92 3.38 10.57 4 478853 Transcript 0 7.46 0.61 0.00 0.91 4.43 9.61 3.25 0.77 3.49 5.68 24.71 1.11 10.13 6.19 3.90 26.23 13.09 1.35 10.88 0.79 1.44 8.88 7.80 5 469141 Transcript 0 5.71 2.64 0.49 0.68 3.21 0.92 1.19 2.59 0.99 0.57 0.97 7.79 4.69 1.46 5.22 1.49 1.98 0.37 1.27 0.00 1.54 0.42 6.75 6 466743 Transcript 1 30.47 5.62 9.14 18.63 81.39 66.64 41.78 31.34 20.40 26.78 35.54 67.62 79.79 43.10 30.18 22.30 29.46 0.98 4.72 3.62 21.61 49.49 21.11 7 ER1a ExonRegion 0 1.49 0.00 1.01 0.00 2.68 2.27 3.58 4.47 2.25 3.44 12.96 1.78 1.93 12.52 12.80 3.50 29.90 1.63 4.12 2.50 13.22 1.84 7.08 8 ER1b ExonRegion 0 2.12 0.00 1.23 0.00 2.68 5.50 6.62 5.19 3.71 6.88 19.33 4.33 18.76 16.24 14.51 8.92 39.61 1.85 9.56 4.26 22.04 2.08 11.75 9 ER1c ExonRegion 1 160.74 139.07 21.61 48.82 196.41 499.18 349.88 115.30 149.93 250.23 593.94 78.47 164.93 349.41 294.03 831.08 642.67 176.41 199.48 205.11 342.31 321.32 524.15 10 E1a_E2a KnownJunction 0 3.78 6.51 2.72 0.00 0.00 0.00 3.62 3.49 16.17 16.87 11.85 0.00 0.00 0.00 0.00 0.00 0.00 10.61 14.31 0.00 0.00 0.00 8.02 11 E1a_E3a KnownJunction 0 7.11 0.00 0.00 1.37 4.07 10.28 4.42 1.85 2.69 11.26 18.85 0.00 0.00 4.94 4.45 42.47 13.46 2.40 19.11 0.00 0.00 15.37 4.27 12 E1a_E4a KnownJunction 1 121.50 99.19 32.88 80.31 122.84 310.56 225.27 182.25 223.12 379.91 284.18 92.43 103.24 162.69 112.24 377.08 265.08 202.54 96.85 128.09 157.29 119.77 276.49 13 E1a_E5a NovelJunction 0 0.00 19.21 3.43 1.56 11.88 17.49 4.50 25.84 33.74 32.77 8.05 0.00 6.82 4.89 4.45 41.95 8.88 37.47 15.91 9.72 15.32 15.00 15.02 14 ER2a ExonRegion 0 10.94 3.19 3.13 5.86 8.47 3.00 5.21 10.37 20.44 12.63 18.41 3.77 7.75 3.73 11.19 22.70 17.08 14.57 5.84 6.87 13.41 4.58 20.00 15 E2a_E4a KnownJunction 0 0.00 6.45 1.83 3.30 0.00 0.00 0.00 3.82 18.37 13.75 9.63 12.15 0.00 2.41 14.22 15.21 17.02 17.04 4.42 2.81 13.34 5.57 3.67 16 ER3a ExonRegion 0 15.26 1.84 0.00 1.36 9.21 12.77 5.32 0.47 3.63 4.61 34.49 3.33 11.73 11.28 7.25 36.24 21.52 1.63 13.54 2.37 4.32 11.26 15.98 17 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 5.79 0.00 0.00 4.14 1.18 20.79 0.00 18.67 2.35 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 3.16 18 ER4a ExonRegion 0 63.62 61.92 30.84 57.98 126.98 173.14 112.87 145.93 174.67 283.78 534.61 236.52 262.23 203.08 126.30 373.56 568.59 151.82 97.63 118.40 309.52 139.92 198.69 19 E4a_E5a KnownJunction 0 21.26 44.53 70.75 108.28 38.62 41.00 48.98 214.53 246.67 453.56 1194.78 409.63 417.18 468.13 276.16 607.87 1112.20 193.92 217.42 268.96 551.49 257.06 362.28 20 ER5a ExonRegion 0 14.26 54.26 66.88 114.63 84.07 106.10 95.93 251.82 301.92 435.42 733.42 502.45 508.85 641.34 391.15 965.39 794.77 336.36 250.11 272.97 410.27 464.90 641.17 21 E5_Da KnownBoundary 0 10.15 40.91 78.06 62.10 168.93 222.66 91.86 156.29 196.79 234.88 307.50 450.45 455.33 438.17 253.79 367.51 357.83 194.54 118.12 179.54 194.85 168.15 228.09 22 E5_Db NovelBoundary 1 16.30 27.82 5.03 14.62 87.18 209.88 109.39 60.87 59.35 93.24 195.63 350.06 413.61 275.30 127.20 246.94 216.55 72.54 65.13 69.67 154.69 116.96 156.81 23 ER5b ExonRegion 1 28.16 49.60 70.65 82.60 167.87 335.66 161.93 193.66 237.73 306.22 425.66 597.28 657.62 524.03 265.78 496.86 494.99 255.87 128.25 181.22 297.02 226.92 313.45 24 E5c_E6a KnownJunction 0 42.60 120.97 59.84 125.06 192.02 635.37 441.45 278.07 300.89 439.14 604.63 759.10 650.61 662.02 299.03 725.79 617.39 301.70 187.02 189.96 420.39 326.68 404.54 25 ER5c ExonRegion 0 35.19 80.58 70.92 107.58 163.56 502.46 285.89 240.36 276.82 384.79 559.82 698.40 708.78 597.27 268.73 615.60 572.29 281.09 156.48 172.74 385.37 281.41 368.55 26 ER6a ExonRegion 0 76.60 84.87 68.16 86.97 120.63 207.90 174.36 205.28 191.33 339.55 533.38 367.26 315.96 660.42 282.71 576.68 619.83 220.75 143.73 153.14 397.91 279.29 320.81 27 E6a_E7a KnownJunction 0 168.10 120.11 66.41 110.58 247.03 228.96 243.20 205.21 129.57 278.93 458.59 234.08 243.17 476.66 247.48 356.57 400.75 142.64 114.17 138.89 232.04 190.44 169.28 28 E7_Aa NovelBoundary 0 63.20 19.93 1.12 19.68 149.58 87.28 121.45 43.29 48.15 56.17 29.43 77.13 41.23 24.31 4.45 25.29 27.30 0.00 8.19 8.95 8.28 32.03 23.73 29 ER7a ExonRegion 0 217.30 160.77 91.06 154.23 359.91 292.20 304.18 297.32 244.66 388.43 519.95 684.93 331.04 707.30 337.76 552.41 583.56 135.92 131.59 158.68 294.11 322.20 304.29 30 E7_Ab KnownBoundary 1 185.74 217.26 82.34 112.91 375.72 353.38 300.31 265.13 242.45 469.20 536.08 744.54 180.35 655.19 476.92 696.31 587.38 242.46 98.45 112.30 396.61 374.81 329.42 31 ER7b ExonRegion 0 244.61 219.10 134.02 177.78 296.13 288.04 296.48 349.88 312.59 543.31 645.95 560.92 310.37 756.26 425.37 756.32 715.30 251.32 222.13 179.16 469.35 455.88 387.82 32 E7_Ac KnownBoundary 0 216.11 286.07 169.95 217.09 459.68 466.27 494.84 438.71 373.84 644.42 773.46 386.68 430.65 874.69 555.54 760.06 760.92 307.79 264.85 198.59 557.48 360.79 397.54 33 ER7c ExonRegion 0 229.41 254.51 150.40 203.43 350.99 362.73 303.19 408.44 328.14 550.54 739.21 455.16 434.24 755.43 470.89 799.95 792.79 308.45 194.86 191.90 508.72 386.09 360.12 34 E7a_E8a KnownJunction 0 236.78 257.85 188.17 250.82 342.87 370.41 267.89 414.48 313.08 533.88 600.63 578.89 665.05 701.58 405.59 719.47 659.75 267.95 198.88 195.91 420.09 376.40 300.82 35 ER8a ExonRegion 0 180.34 212.99 197.96 245.94 383.92 396.58 365.33 486.69 378.77 636.59 811.57 588.31 838.19 969.08 581.74 923.39 869.99 292.57 274.84 249.46 495.04 496.21 484.50 36 E8a_E9a KnownJunction 0 258.71 214.24 177.94 246.72 299.92 226.97 333.56 540.90 394.59 704.29 653.53 572.59 693.62 954.45 685.09 759.80 679.85 219.62 169.70 242.76 354.85 563.41 385.41 37 ER9a ExonRegion 0 339.29 249.57 191.09 238.69 412.54 435.79 421.29 522.13 381.51 638.22 895.16 612.16 971.38 990.57 602.11 798.31 938.01 219.11 231.99 254.43 409.24 502.44 409.14 38 E9a_E10a KnownJunction 1 288.27 258.70 190.47 220.38 566.72 458.49 450.11 569.98 371.64 627.76 899.91 535.22 1045.22 949.74 607.70 787.83 911.55 196.78 223.91 248.83 358.31 610.31 435.95 39 ER10a ExonRegion 1 346.01 268.26 185.59 217.98 678.10 538.42 500.52 534.15 348.80 538.63 822.51 909.39 1381.08 973.97 588.10 806.22 822.00 185.21 230.13 221.70 315.23 480.73 411.48 40 E10a_E11a KnownJunction 0 22.74 0.00 8.25 15.35 53.82 53.95 26.59 25.34 7.12 22.38 30.17 55.37 53.89 40.56 34.61 18.80 33.47 0.00 0.00 0.00 25.76 30.13 15.54 41 E10a_E12a KnownJunction 1 220.63 190.69 178.73 224.21 326.32 294.38 354.32 398.42 265.04 404.89 610.68 800.96 1220.21 989.06 706.23 653.85 632.35 155.82 226.27 168.87 259.34 418.84 300.39 42 ER11a ExonRegion 1 38.20 11.24 10.04 21.92 108.97 79.34 56.97 37.33 33.69 31.19 40.91 79.88 105.68 45.64 25.75 25.81 25.44 1.96 9.45 7.23 17.46 68.86 26.67 43 E11_Da NovelBoundary 0 139.28 13.02 17.03 32.13 181.24 186.03 107.58 83.96 53.21 101.16 55.59 60.17 127.59 51.74 29.42 91.51 37.03 0.00 12.89 11.38 31.32 106.30 54.55 44 I11_AR1 ActiveIntronRegion 0 44.54 13.84 8.97 24.65 62.13 61.87 47.83 45.88 37.32 51.31 21.83 50.80 57.40 28.49 17.57 24.59 18.06 2.90 10.50 5.52 18.69 62.99 34.40 45 I11_SR3 SilentIntronRegion 0 66.23 16.84 6.95 26.57 73.98 46.46 45.16 40.52 30.48 41.03 23.68 17.50 20.77 32.35 15.74 29.53 21.86 9.27 4.75 6.69 42.66 54.49 34.52 46 E12_Aa NovelBoundary 0 149.58 5.66 8.10 64.73 131.66 68.65 102.10 82.02 60.79 68.47 16.53 26.56 48.37 31.67 20.27 35.38 34.88 13.89 8.85 15.08 37.13 31.66 47.21 47 ER12a ExonRegion 1 332.36 248.13 215.17 276.45 585.36 544.94 517.55 437.70 303.65 539.09 686.13 961.72 1131.10 929.39 663.94 684.63 770.23 160.09 215.66 181.79 335.03 446.38 389.59 48 E12a_E13a KnownJunction 1 524.61 250.61 188.91 312.15 1131.75 850.48 711.73 437.15 312.70 531.11 666.17 1473.48 1531.07 1069.64 945.55 815.26 833.66 206.23 239.54 183.57 379.81 570.15 478.03 49 ER12b ExonRegion 0 5.71 2.64 0.49 0.68 3.21 0.92 1.19 2.59 0.99 0.57 0.97 7.79 4.69 1.46 5.22 1.49 1.98 0.37 1.27 0.00 1.54 0.42 6.75 50 I12_SR2 SilentIntronRegion 0 42.33 12.20 4.90 24.53 61.54 18.34 66.86 31.11 15.03 10.32 23.84 25.98 18.76 6.50 42.07 44.09 28.61 1.85 12.74 19.15 27.91 31.25 49.92 51 I12_AR3 ActiveIntronRegion 0 39.98 11.75 4.90 24.38 55.30 18.34 65.46 28.81 13.31 10.19 22.98 25.98 18.76 6.68 45.78 41.61 30.81 1.85 12.03 16.78 26.20 29.40 48.62 52 ER13a ExonRegion 0 242.81 124.48 158.50 215.32 386.24 341.85 326.64 376.96 293.24 460.10 637.07 946.15 873.43 872.45 621.47 678.39 754.56 204.67 200.05 137.82 403.70 377.20 385.28 53 E13a_E14a KnownJunction 1 196.63 107.15 148.22 175.70 199.49 301.25 250.18 258.73 204.77 363.68 361.41 651.66 285.21 400.20 314.48 356.83 431.42 196.53 103.25 66.41 239.88 248.55 169.87 54 I13 Intron 0 54.67 10.86 12.33 18.81 50.45 47.16 48.62 48.00 28.48 30.36 37.08 23.73 26.91 29.78 34.76 93.93 34.53 9.31 25.34 13.22 31.68 77.20 72.00 55 I13_SR1 SilentIntronRegion 0 54.90 10.91 12.39 18.89 50.67 47.36 48.83 48.20 28.60 30.49 37.23 23.80 27.02 29.90 34.91 94.33 34.67 9.35 25.45 13.27 31.82 77.53 72.30 56 ER14a ExonRegion 0 411.81 188.43 143.74 177.00 478.79 635.67 474.01 341.29 262.63 430.42 496.51 568.21 454.64 821.91 608.42 639.98 622.93 179.19 185.46 125.69 356.36 318.58 354.42 57 E14a_E15a KnownJunction 0 324.13 143.00 141.42 162.15 675.72 834.41 560.60 331.34 223.03 428.50 537.72 650.16 524.64 1071.82 873.97 611.04 628.89 213.53 226.92 136.72 400.32 315.96 304.32 58 ER15a ExonRegion 0 505.75 236.87 112.55 160.87 472.53 292.26 275.10 246.85 161.08 264.97 322.54 223.63 152.41 420.65 433.26 447.83 347.39 99.73 125.18 75.40 193.88 284.06 247.63