Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HMGN2 Gene 0 1742.40 1338.36 770.30 729.24 2003.53 1219.83 2188.80 1444.10 746.44 1710.52 2326.88 1749.36 591.40 2701.15 2298.77 2854.32 2337.65 863.60 631.12 654.16 299.11 376.83 169.24 2 468388 Transcript 0 37.49 10.61 4.11 2.19 13.76 34.97 34.61 4.81 3.97 3.07 35.21 0.00 5.86 41.30 24.45 34.18 45.62 7.65 6.48 8.73 17.94 12.72 26.43 3 479815 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 460563 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 464888 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 463817 Transcript 0 0.00 0.00 0.00 5.29 0.00 8.69 1.94 0.00 6.92 1.13 2.47 0.00 0.00 2.30 0.00 0.00 0.00 4.68 0.00 2.62 0.00 0.00 0.00 7 467700 Transcript 0 8.82 10.66 3.67 3.30 31.66 5.28 10.38 8.63 7.41 3.22 22.32 11.70 6.01 9.30 4.45 21.19 4.77 22.34 0.00 3.26 3.15 3.12 0.00 8 361427 Transcript 0 2568.10 1729.21 1699.20 1521.61 3077.24 1308.10 2565.50 3258.64 1582.31 3555.99 4398.56 3912.90 1608.55 4346.07 5203.52 4054.51 4563.64 990.85 1045.29 1238.91 423.00 731.38 232.87 9 466194 Transcript 1 81.97 50.74 25.34 33.79 79.71 78.38 84.38 47.77 46.44 77.21 67.11 13.82 15.85 132.61 53.49 86.93 57.54 61.62 18.73 33.30 30.97 28.25 16.23 10 493418 Transcript 0 179.79 45.34 40.92 48.76 136.69 52.53 141.02 63.43 32.73 65.95 81.25 61.01 19.18 72.56 56.38 100.01 77.63 22.61 11.30 27.45 10.93 15.03 6.31 11 IG41 Intergenic 0 7.87 2.04 7.49 6.10 9.18 6.12 12.62 19.27 20.79 19.71 11.42 8.53 2.67 11.00 13.10 10.62 9.13 11.74 5.01 10.24 9.87 4.87 8.96 12 IG41_SR1 SilentIntergenicRegion 0 10.17 2.48 8.93 7.55 12.70 7.52 16.79 25.10 22.65 24.00 12.37 8.66 3.50 12.70 15.50 14.11 11.15 14.58 5.98 12.03 11.61 5.59 11.42 13 IG41_AR1 ActiveIntergenicRegion 0 3.37 1.17 4.67 3.27 2.28 3.39 4.46 7.87 17.24 11.35 9.62 8.33 1.05 7.69 8.44 3.80 5.18 6.19 3.11 6.77 6.49 3.46 4.15 14 ER1a ExonRegion 0 74.99 15.83 8.23 4.38 27.52 69.95 69.22 9.63 7.94 6.14 70.41 0.00 11.73 82.60 48.91 68.36 91.25 15.31 12.97 14.89 35.89 25.45 52.86 15 ER1b ExonRegion 0 440.84 168.21 35.01 31.15 180.23 338.07 293.73 58.27 33.52 34.65 316.31 2.47 26.80 365.08 250.13 492.52 389.74 116.67 149.26 64.44 114.44 157.90 215.00 16 E1_Ad KnownBoundary 0 788.36 298.24 47.31 48.11 379.88 548.38 616.20 98.70 61.52 60.65 409.84 27.31 19.32 304.49 166.64 793.30 545.21 147.08 201.04 103.87 175.39 186.52 256.00 17 ER1c ExonRegion 1 812.89 330.35 61.56 57.48 527.68 763.68 716.67 105.55 65.33 79.65 614.86 24.63 40.75 778.12 446.59 965.43 737.92 223.58 250.44 141.60 255.40 221.72 315.44 18 E1_Ae KnownBoundary 0 0.00 0.00 1.80 10.06 0.00 0.00 0.00 9.90 1.71 3.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.59 0.00 0.00 0.00 0.00 0.00 19 E1_Af KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 2.51 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E1_Ag KnownBoundary 1 1412.32 417.69 106.74 82.97 1393.97 1269.78 1583.14 163.11 136.05 189.32 1055.53 12.60 73.37 96.12 208.79 1810.21 818.04 453.17 340.81 320.93 227.53 67.54 150.67 21 ER1d ExonRegion 1 1569.61 584.86 130.62 109.03 1344.30 1575.97 1612.85 213.98 159.08 213.32 1336.79 36.37 70.35 1000.13 833.24 2100.70 1245.76 548.41 477.80 349.79 394.46 255.44 356.51 22 ER1e ExonRegion 1 2097.47 980.19 179.31 161.27 2150.41 2186.81 2769.06 300.75 209.35 321.32 1705.14 53.40 110.22 2069.67 1759.61 3042.96 1822.09 944.51 745.38 500.71 463.51 203.84 337.71 23 ER1f ExonRegion 1 4674.33 3022.92 419.08 425.22 4948.79 4875.15 7501.56 766.57 477.99 954.80 3500.48 80.10 143.05 7973.61 6092.63 6968.15 5060.27 2599.78 1844.33 1256.38 833.00 247.94 415.53 24 ER1g ExonRegion 1 3562.51 2686.32 644.06 493.77 4279.39 3908.56 5568.11 1164.90 720.67 1748.56 3199.43 267.91 316.75 4756.68 3282.90 6364.64 4424.30 3150.09 1458.98 992.27 663.77 205.03 233.90 25 E1a_E2c KnownJunction 0 0.00 5.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 26 E1a_E2d KnownJunction 0 1271.26 1078.23 431.95 305.12 1405.18 446.39 1464.61 454.69 314.49 610.79 1144.50 766.45 812.77 1021.49 624.39 1899.33 1338.57 369.76 201.98 425.05 391.05 151.25 170.30 27 ER2a ExonRegion 0 81.97 50.74 25.34 33.79 79.71 78.38 84.38 47.77 46.44 77.21 67.11 13.82 15.85 132.61 53.49 86.93 57.54 61.62 18.73 33.30 30.97 28.25 16.23 28 E2_Ab KnownBoundary 0 176.40 87.94 71.76 74.22 212.56 232.25 251.64 118.25 102.28 155.99 144.72 62.42 57.46 245.04 142.90 245.23 98.36 122.83 62.87 61.30 43.06 84.44 46.69 29 E2_Ac KnownBoundary 0 272.20 88.54 34.33 38.76 115.70 94.32 178.28 72.13 45.69 73.82 126.77 124.69 42.85 182.53 115.33 153.63 85.55 65.33 61.93 38.09 28.60 36.99 27.40 30 ER2b ExonRegion 0 204.21 86.72 83.36 78.96 161.15 154.87 199.19 144.86 103.07 165.75 155.63 78.07 43.72 218.84 121.29 208.43 112.02 116.41 47.99 56.62 37.18 68.62 33.35 31 E2_Ad KnownBoundary 0 133.36 71.83 72.32 62.20 206.71 97.56 162.92 98.04 65.19 94.18 111.08 146.00 81.98 196.60 80.85 129.20 104.16 40.87 26.17 58.42 28.91 29.88 28.85 32 ER2c ExonRegion 0 274.96 141.73 109.00 86.28 254.20 140.17 269.92 165.10 116.48 189.14 214.80 180.33 95.64 268.83 125.76 308.20 200.06 103.31 56.64 72.53 56.63 50.19 39.58 33 ER2d ExonRegion 0 1951.28 1728.36 762.90 524.62 2599.49 1063.02 2594.51 1173.35 792.41 1783.67 3939.60 1456.96 464.63 2609.30 2004.17 4488.05 4516.68 1005.76 635.26 817.79 890.40 413.25 408.53 34 E2_Da KnownBoundary 0 214.41 117.74 80.81 128.56 190.66 148.27 135.54 121.83 92.77 206.19 213.21 189.51 113.30 262.82 141.05 251.81 191.77 73.54 67.30 116.14 59.74 78.44 40.97 35 E2a_E2e KnownJunction 1 1301.27 1175.65 810.76 517.35 1777.08 842.81 1927.48 1105.34 709.54 1805.39 5782.99 2472.81 400.14 3449.48 2598.19 2969.39 7234.96 884.78 732.63 1110.69 1097.41 517.61 471.29 36 ER2e ExonRegion 0 143.59 95.16 87.19 124.42 175.95 126.09 122.10 180.21 142.80 232.82 181.69 219.16 73.58 280.89 165.27 196.47 197.43 106.60 52.61 89.25 51.18 56.26 35.49 37 E2_Db KnownBoundary 0 222.71 121.56 92.96 92.96 221.90 107.04 157.57 222.42 171.38 214.65 134.24 173.46 65.42 346.76 283.45 265.31 158.39 105.08 54.97 89.16 28.05 44.03 83.91 38 E2b_E2e KnownJunction 0 0.00 0.00 0.00 5.29 0.00 8.69 1.94 0.00 6.92 1.13 2.47 0.00 0.00 2.30 0.00 0.00 0.00 4.68 0.00 2.62 0.00 0.00 0.00 39 ER2f ExonRegion 0 283.54 134.75 110.94 128.02 308.35 216.03 274.90 208.88 152.31 259.96 238.21 260.17 101.55 282.91 149.96 292.48 256.85 96.99 56.20 88.87 55.09 63.18 36.11 40 E2_Ae KnownBoundary 0 299.98 153.53 110.52 117.17 533.53 314.42 373.13 140.51 143.66 219.68 159.67 278.64 81.98 314.15 192.22 237.80 190.28 63.22 74.64 98.56 52.14 64.91 33.12 41 E2_Dc KnownBoundary 0 396.29 188.06 95.41 151.70 291.60 284.04 263.61 238.07 132.55 221.26 267.70 373.17 212.32 405.68 185.67 396.14 249.18 147.33 80.28 96.26 38.24 61.91 50.53 42 E2c_E2f KnownJunction 1 1208.21 742.37 1025.30 902.18 1060.36 539.06 1249.67 1693.40 929.39 2183.66 3494.99 686.77 169.63 5897.55 4047.60 6549.91 4864.32 2223.14 2443.08 1532.22 460.86 457.84 503.39 43 ER2g ExonRegion 1 1393.03 997.58 1134.95 913.84 1544.18 848.99 1669.15 1988.85 1217.78 2904.48 5225.03 1829.72 384.74 4393.47 2884.35 4618.27 6699.91 2130.33 1369.71 1420.10 854.20 529.29 506.32 44 ER2h ExonRegion 0 318.15 192.47 101.46 145.30 351.75 229.92 338.83 259.72 170.30 273.13 349.79 368.87 162.88 366.42 215.85 424.77 318.28 149.60 59.17 89.51 65.96 69.57 47.78 45 E2_Dd KnownBoundary 0 607.29 217.40 120.16 143.77 656.54 283.59 435.62 266.12 188.22 282.72 368.67 413.98 242.84 272.24 176.40 344.10 276.30 114.12 49.41 107.38 101.07 79.79 58.39 46 E2d_E2f KnownJunction 0 8.82 10.66 3.67 3.30 31.66 5.28 10.38 8.63 7.41 3.22 22.32 11.70 6.01 9.30 4.45 21.19 4.77 22.34 0.00 3.26 3.15 3.12 0.00 47 ER2i ExonRegion 0 525.52 194.35 126.19 138.65 394.39 254.57 318.92 243.51 151.35 233.34 284.32 265.75 150.75 338.28 204.32 393.45 298.94 118.97 87.99 77.22 62.25 66.80 46.64 48 E2_Af KnownBoundary 0 961.73 284.95 151.47 176.93 764.69 375.24 564.44 290.19 146.09 219.30 207.84 174.06 171.90 281.30 242.91 486.97 289.57 124.32 116.80 79.32 50.10 90.93 46.27 49 ER2j ExonRegion 1 1566.07 918.61 1240.22 1081.15 1131.78 693.13 1276.36 2177.53 1216.90 2800.58 2508.72 947.95 256.75 9712.20 7037.09 10312.31 3230.89 2801.66 2592.07 1529.14 419.88 623.75 532.08 50 E2_De NovelBoundary 1 357.62 301.72 22.97 24.17 271.82 193.47 417.29 54.26 26.30 35.22 382.52 196.71 67.53 2014.25 1288.46 2883.86 506.22 192.14 608.49 554.42 106.20 166.80 167.23 51 E2f_E3a KnownJunction 1 2054.73 1349.69 1288.16 1142.51 1588.54 1105.44 1611.23 1910.27 1108.12 2212.94 2587.08 1279.17 227.26 4777.11 4468.64 8464.27 2824.12 3231.08 1519.57 1705.63 548.95 526.98 482.30 52 ER2k ExonRegion 1 1609.46 1106.85 1250.40 1031.51 1170.07 839.36 1346.09 2161.80 1213.94 2757.98 2558.88 1154.73 191.62 5943.81 5077.19 8217.08 2762.38 2748.92 1405.66 1545.89 479.15 456.89 395.61 53 ER3a ExonRegion 1 2794.11 2559.51 1217.62 1013.33 4105.63 4703.31 6962.37 2266.81 1227.33 2905.47 4391.04 1853.19 491.28 4515.00 3164.12 5736.61 3951.52 1774.17 953.09 1195.87 594.66 676.28 272.95 54 E3_Da KnownBoundary 0 166.99 26.38 21.70 39.76 79.88 43.78 141.28 64.73 18.72 62.16 48.17 17.86 45.45 64.51 58.72 100.32 38.80 33.04 16.28 30.42 14.21 7.65 14.85 55 E3a_E3b KnownJunction 0 4323.66 4802.43 1118.17 1166.68 2952.29 3746.14 7194.37 2346.81 1246.66 2826.39 3244.98 3185.69 543.96 3529.83 2701.04 4096.53 2970.36 1209.07 735.55 730.45 402.11 447.98 307.82 56 ER3b ExonRegion 0 179.79 45.34 40.92 48.76 136.69 52.53 141.02 63.43 32.73 65.95 81.25 61.01 19.18 72.56 56.38 100.01 77.63 22.61 11.30 27.45 10.93 15.03 6.31 57 E3_Ab KnownBoundary 0 368.66 51.04 31.99 54.80 151.36 28.90 146.89 59.31 22.86 56.95 94.87 48.17 19.32 57.04 29.05 97.58 75.08 13.93 4.80 19.56 9.08 0.00 3.33 58 ER3c ExonRegion 1 4052.80 5040.56 1273.38 1280.32 3268.22 2705.02 5217.41 2855.67 1421.70 3409.16 4246.75 3190.53 511.32 4127.07 2948.25 3958.67 3913.98 1352.27 866.42 942.60 561.80 522.41 235.45 59 E3_Db KnownBoundary 0 4385.89 4963.52 1113.95 1113.15 2824.62 1880.39 3939.45 2490.77 1276.90 2928.22 4110.88 2587.74 629.18 4380.68 3373.76 3380.91 3735.29 926.94 759.27 1012.77 524.98 506.03 173.03 60 ER3d ExonRegion 0 5190.09 4841.98 1410.52 1346.80 6302.84 2932.87 6677.19 3149.54 1581.23 3932.90 6242.38 3823.41 1084.40 6416.59 4216.27 4745.76 5165.62 1197.39 1057.31 1351.45 604.54 956.57 299.16 61 E3_Dc KnownBoundary 0 7067.10 4980.95 1312.14 1441.31 11488.55 4484.75 10813.02 2907.88 1340.99 3457.32 6758.66 6386.23 2151.81 8556.28 4836.28 6881.36 5282.18 990.40 1571.15 1716.43 581.88 1650.79 537.10 62 ER3e ExonRegion 0 4000.30 2673.34 1596.47 1811.19 5049.62 2397.79 4671.94 2941.59 1429.38 3532.64 4804.70 5339.71 1608.65 6351.39 4678.75 7497.41 4370.61 1619.82 1552.26 1295.47 435.07 1076.85 381.61 63 E3_Dd KnownBoundary 0 4397.52 3077.74 2599.08 2557.55 5784.04 2952.11 5894.26 3922.90 2013.46 5093.38 7136.18 4988.68 2249.37 5532.02 4901.30 5106.10 6319.30 1501.65 1143.37 1535.55 721.44 1001.05 285.37 64 ER3f ExonRegion 0 3819.17 3492.16 1979.26 1795.68 4237.23 2590.29 4810.83 3646.29 1922.01 4674.56 6131.77 4988.75 1467.46 6327.10 4743.02 5415.21 6277.52 1628.12 1213.27 1443.79 738.18 869.23 353.01 65 E3_De KnownBoundary 0 4497.91 4704.49 1999.78 1976.74 3808.07 2400.49 5300.67 3879.85 1933.75 4518.18 4720.88 5520.90 1404.78 6272.50 5414.19 5875.21 4775.03 2092.57 1344.51 1919.50 608.75 926.34 495.70 66 ER3g ExonRegion 0 5781.11 4460.88 2325.25 2336.08 5299.25 3098.64 6158.59 3938.29 1998.74 4586.60 6337.51 5651.06 1593.38 7710.29 6417.55 8463.52 5833.35 2616.04 1745.77 1836.58 830.28 1035.31 448.42 67 E3_Df KnownBoundary 0 1043.07 1503.15 761.89 720.52 1481.33 1209.47 2545.32 1665.88 757.57 1786.00 1825.78 1278.57 521.88 1888.76 1442.86 2392.62 1600.37 845.77 585.15 595.84 272.31 360.42 115.50 68 E3_Dg KnownBoundary 0 962.17 1260.96 873.51 842.48 2571.90 1386.59 2810.43 1521.10 759.92 1743.90 1578.08 1118.01 411.50 1679.98 1664.01 2445.17 1483.78 947.04 640.21 616.35 200.04 343.46 174.14 69 ER3h ExonRegion 0 2180.01 3139.17 1754.32 1710.42 4910.89 3010.49 5982.10 3487.44 1705.69 3960.64 4595.14 4398.74 1485.18 6514.88 6353.74 6257.32 4138.22 2123.68 1483.32 1567.37 624.38 834.80 342.61 70 ER3i ExonRegion 0 2063.64 2489.00 1920.35 1777.58 5013.57 2549.30 5027.63 3828.85 1868.22 4202.02 4918.69 4105.45 1369.57 5901.55 6055.36 5348.96 4532.07 2130.97 1232.41 1662.06 647.32 750.89 301.31 71 E3_Dh KnownBoundary 0 2309.59 2385.23 2281.59 1931.09 4744.06 2002.20 4307.63 4486.97 2145.29 4584.31 5779.52 3919.13 1323.29 5224.35 5752.04 4526.16 5304.06 1887.99 1127.66 1944.42 803.35 676.94 324.98 72 ER3j ExonRegion 0 2568.10 1729.21 1699.20 1521.61 3077.24 1308.10 2565.50 3258.64 1582.31 3555.99 4398.56 3912.90 1608.55 4346.07 5203.52 4054.51 4563.64 990.85 1045.29 1238.91 423.00 731.38 232.87 73 IG42_AR1 ActiveIntergenicRegion 0 19.58 35.49 12.89 31.96 117.70 31.00 102.77 107.63 48.79 67.57 14.34 12.24 7.61 10.95 14.67 14.53 26.47 25.93 11.71 17.42 6.11 5.46 4.03 74 IG42_SR1 SilentIntergenicRegion 0 6.17 5.29 0.67 4.38 21.64 3.67 42.37 26.88 13.44 10.67 2.58 6.30 9.16 2.39 3.24 5.65 11.11 6.40 3.86 6.35 2.49 0.73 1.18 75 IG42_AR2 ActiveIntergenicRegion 0 5.82 13.98 1.23 4.09 13.04 7.34 54.61 37.81 18.84 20.36 4.35 7.58 14.07 0.61 3.26 6.32 24.34 15.71 5.97 13.56 4.13 2.08 2.94 76 IG42_AR3 ActiveIntergenicRegion 0 15.39 15.16 0.89 4.34 22.87 5.67 57.65 37.87 20.10 22.52 5.27 9.05 14.07 0.00 3.96 6.75 28.21 20.66 11.00 12.77 4.01 2.08 2.94 77 IG42_AR4 ActiveIntergenicRegion 0 20.64 16.27 0.00 5.45 37.46 5.96 57.43 34.79 17.14 20.79 5.80 17.32 12.31 1.83 10.52 9.29 23.93 16.63 12.74 10.64 4.41 0.52 2.94 78 IG42_AR5 ActiveIntergenicRegion 0 19.35 12.20 0.00 3.89 46.63 5.50 67.14 37.78 18.70 17.70 1.93 12.99 8.04 3.25 11.61 8.92 26.41 16.63 10.92 9.12 2.83 0.00 0.00 79 IG42_AR6 ActiveIntergenicRegion 0 19.28 10.17 0.00 2.73 53.51 2.24 63.26 44.75 14.82 18.48 1.93 12.99 4.69 3.43 14.18 11.56 19.81 16.01 9.20 8.98 2.20 0.00 0.00 80 IG42_AR7 ActiveIntergenicRegion 0 18.47 7.39 0.00 3.72 50.35 1.83 64.15 46.51 15.05 17.20 1.58 11.41 4.69 6.50 11.34 12.70 14.40 12.77 5.21 7.74 1.60 2.08 0.00 81 IG42_AR8 ActiveIntergenicRegion 0 8.43 8.59 2.06 5.32 20.07 1.21 32.36 26.57 9.18 10.08 1.70 7.73 6.31 2.40 4.77 7.28 10.24 8.43 5.60 5.73 1.66 1.24 0.74