Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZBTB40 Gene 0 66.77 29.75 33.04 40.60 60.83 80.00 67.28 65.44 96.01 80.79 98.43 64.38 60.61 116.97 80.22 120.61 93.11 65.87 31.65 43.76 55.06 76.67 78.95 2 404138 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 374651 Transcript 0 0.00 3.09 0.00 0.00 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 4 400239 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 375647 Transcript 1 0.00 6.25 0.00 3.20 3.74 2.44 6.45 21.40 42.45 29.84 68.18 6.30 0.00 27.78 18.05 15.64 52.92 11.44 12.71 27.48 25.45 27.80 34.06 6 374649 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 0.37 0.00 0.86 0.00 0.63 9.38 2.88 0.00 0.58 0.94 6.03 0.00 0.00 3.73 0.68 1.57 4.47 2.17 1.12 1.00 1.56 2.21 7.08 8 ER1b ExonRegion 1 12.70 6.62 1.31 3.52 23.30 51.32 20.95 7.38 28.60 23.25 47.11 1.77 0.00 21.22 16.18 52.20 42.79 24.91 14.60 29.62 19.33 19.59 36.01 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 1.40 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.28 0.00 0.00 0.00 0.00 10 E1a_E3a KnownJunction 1 0.00 6.25 0.00 3.20 3.74 2.44 6.45 21.40 42.45 29.84 68.18 6.30 0.00 27.78 18.05 15.64 52.92 11.44 12.71 27.48 25.45 27.80 34.06 11 ER2a ExonRegion 0 0.75 1.08 1.29 3.62 1.42 3.90 4.45 1.82 7.17 7.51 4.60 3.32 1.37 3.16 1.09 4.46 3.77 0.00 3.66 1.17 3.82 2.00 5.72 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 3.40 0.00 0.00 0.00 0.00 6.94 1.56 6.95 0.00 0.00 4.53 0.00 4.36 8.23 0.00 0.00 0.00 2.47 3.12 0.00 13 ER3a ExonRegion 1 2.81 8.74 1.72 14.82 11.81 9.09 5.71 20.42 45.58 49.55 107.05 20.60 15.81 69.14 32.29 57.23 100.49 16.74 28.71 44.86 52.32 49.32 41.57 14 E3_Ab KnownBoundary 0 0.00 3.16 5.85 9.42 12.39 31.74 16.03 22.67 60.39 46.58 71.12 18.16 32.95 82.64 60.45 94.93 46.75 19.40 58.73 57.97 31.01 84.44 94.24 15 ER3b ExonRegion 0 11.46 13.58 6.19 15.95 27.83 49.07 34.74 23.99 79.29 57.12 78.87 45.50 30.63 95.36 31.97 84.50 85.74 34.94 23.49 40.56 48.27 55.64 55.54 16 E3_Da KnownBoundary 1 31.49 6.05 17.62 15.32 39.98 21.58 24.51 33.60 89.26 55.47 57.80 49.07 73.05 159.57 44.50 65.62 79.29 51.40 17.79 55.48 76.85 57.50 57.53 17 E3a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3c ExonRegion 1 15.03 13.90 13.39 14.20 23.06 47.27 39.91 41.77 83.10 57.24 87.29 68.43 40.73 129.75 34.84 132.33 89.31 60.51 37.63 34.93 70.46 68.25 82.86 19 E3_Ac KnownBoundary 1 17.93 29.14 9.82 7.36 19.69 61.44 40.98 41.94 76.85 54.05 72.91 98.28 68.18 136.09 35.48 92.37 96.21 36.85 4.61 33.43 63.88 49.11 52.75 20 ER3d ExonRegion 1 15.91 16.82 9.61 9.99 23.39 34.93 44.02 37.68 64.10 63.68 98.17 70.36 69.10 125.20 39.08 133.67 82.52 45.76 24.48 32.83 59.23 59.01 76.34 21 E3b_E4a KnownJunction 0 23.49 14.14 7.81 9.26 26.99 39.24 54.10 29.53 47.86 67.61 91.97 111.04 89.12 103.30 32.14 122.36 107.99 18.20 4.42 42.76 36.70 57.87 59.41 22 ER4a ExonRegion 1 32.43 19.09 7.39 16.74 47.98 64.58 70.43 39.02 92.36 70.63 105.44 125.85 117.50 136.78 41.22 113.96 109.18 28.65 26.98 43.09 41.39 81.60 72.52 23 E4a_E5a KnownJunction 1 68.01 17.69 9.20 19.01 41.43 58.83 89.52 51.01 102.63 66.73 101.71 204.82 135.06 110.31 51.80 96.98 92.38 27.19 25.04 64.24 24.90 95.95 78.53 24 E4a_E7a KnownJunction 0 0.00 3.09 0.00 0.00 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 25 ER5a ExonRegion 0 28.93 14.34 8.22 24.14 36.73 53.32 64.69 27.15 86.45 70.92 109.57 148.82 132.24 125.17 42.69 105.53 109.94 21.06 25.60 55.16 36.72 80.17 62.34 26 E5_Da NovelBoundary 1 30.30 13.22 0.00 3.60 32.85 26.92 43.10 34.54 64.96 18.80 38.43 120.19 72.72 58.10 36.10 69.47 62.37 6.18 14.40 33.62 15.14 73.66 63.08 27 E5a_E6a KnownJunction 0 0.00 16.44 3.93 20.54 17.06 22.71 12.90 16.96 31.05 68.69 71.60 87.63 71.59 103.77 33.62 76.30 86.77 29.22 31.44 39.25 57.95 45.13 74.01 28 I5 Intron 0 42.72 8.61 3.94 9.28 28.45 33.21 33.54 27.60 58.25 14.06 43.03 79.05 68.02 59.59 25.49 57.78 47.98 8.63 11.11 16.97 12.26 49.84 39.76 29 I5_AR1 ActiveIntronRegion 0 42.86 8.64 3.96 9.31 28.54 33.31 33.65 27.69 58.44 14.10 43.16 79.31 68.22 59.78 25.57 57.97 48.14 8.66 11.15 17.02 12.30 50.00 39.89 30 E6_Aa NovelBoundary 0 67.27 11.97 1.80 5.36 31.49 7.78 39.97 40.09 55.90 19.56 41.01 64.37 39.93 61.57 43.88 61.35 33.01 8.75 8.75 12.21 8.22 33.80 40.46 31 ER6a ExonRegion 0 46.95 19.98 12.45 22.92 56.47 73.40 80.25 43.51 94.53 80.03 124.98 159.83 135.49 137.68 51.17 126.53 118.92 42.59 22.14 48.42 46.56 80.49 85.22 32 E6_Da NovelBoundary 1 0.00 0.00 0.00 0.00 3.82 0.00 5.61 1.89 1.48 1.26 2.32 38.71 34.25 9.30 0.00 17.35 4.77 9.91 0.00 9.46 10.87 0.00 7.51 33 E6a_E7a KnownJunction 0 57.12 18.94 12.06 35.36 83.36 139.69 98.62 52.04 108.56 95.49 116.50 137.29 122.88 174.70 78.25 178.76 164.94 68.61 41.04 40.72 58.19 76.11 148.96 34 I6 Intron 0 3.75 0.35 0.77 1.21 3.35 2.15 10.25 2.58 3.44 2.04 6.36 22.08 20.44 9.17 2.20 6.81 7.88 1.59 1.53 2.95 2.38 7.98 5.71 35 I6_SR1 SilentIntronRegion 0 3.75 0.35 0.77 1.21 3.35 2.16 10.25 2.58 3.44 2.04 6.37 22.10 20.46 9.18 2.21 6.81 7.89 1.60 1.53 2.95 2.38 7.99 5.71 36 E7_Aa NovelBoundary 1 7.56 2.83 1.83 4.13 4.33 2.78 10.47 0.00 3.04 4.16 4.58 51.62 6.82 19.84 15.20 4.02 12.62 8.04 17.13 5.94 11.18 7.90 12.55 37 ER7a ExonRegion 0 65.37 23.57 16.69 20.54 51.45 80.92 66.71 56.90 122.04 89.83 158.53 159.67 119.05 168.46 66.04 172.08 164.46 81.22 46.11 51.41 60.70 99.02 121.54 38 E7a_E8a KnownJunction 0 81.42 34.27 12.03 16.28 54.16 98.13 111.56 40.38 103.41 110.08 133.67 180.81 112.01 172.64 69.23 165.34 121.83 67.36 38.50 30.87 62.02 130.24 101.58 39 E7a_E9a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 7.42 0.00 0.00 7.06 4.45 0.00 4.77 2.28 0.00 6.01 3.15 6.25 3.50 40 ER8a ExonRegion 0 75.22 24.85 13.27 17.57 88.69 94.17 100.57 64.97 120.88 99.79 144.22 131.37 116.16 169.98 58.79 196.29 149.14 80.42 40.55 49.74 63.92 108.46 140.21 41 E8a_E9a KnownJunction 1 61.71 17.83 10.64 24.91 42.95 88.07 69.91 84.04 133.16 110.94 152.35 247.73 94.80 225.32 85.30 291.46 154.56 77.93 41.98 46.53 63.75 156.27 172.09 42 ER9a ExonRegion 0 43.96 18.87 16.39 21.27 52.30 63.26 55.55 79.58 150.73 102.51 138.04 174.81 148.29 170.32 66.60 190.76 143.12 69.77 44.01 56.68 81.22 129.39 124.37 43 E9a_E10a KnownJunction 1 104.39 46.97 16.14 36.86 59.42 93.24 138.36 88.80 174.33 107.21 164.52 228.97 220.44 256.93 136.35 308.64 169.52 141.85 75.39 90.57 98.41 200.60 217.51 44 ER10a ExonRegion 1 43.88 19.03 9.06 21.71 44.45 69.70 82.08 65.81 123.75 75.48 134.67 126.75 147.49 177.44 54.47 161.16 128.09 80.79 32.69 54.14 85.37 102.34 111.81 45 E10a_E11a KnownJunction 1 63.42 14.87 8.10 26.70 48.73 77.40 56.79 69.70 106.91 62.88 133.61 83.28 194.79 169.70 28.56 138.94 107.43 41.29 25.69 66.47 87.04 83.22 131.20 46 ER11a ExonRegion 0 37.15 11.92 13.25 26.14 38.46 65.76 56.20 64.80 110.01 82.58 123.60 97.45 111.23 165.51 62.09 139.02 126.98 73.19 31.97 49.38 72.97 92.43 108.06 47 E11a_E12a KnownJunction 0 31.12 24.54 19.84 32.43 60.44 77.17 52.47 60.58 115.57 103.93 111.40 50.57 118.50 211.61 94.69 183.71 146.61 82.16 17.69 56.50 62.58 92.03 156.64 48 ER12a ExonRegion 0 48.90 19.99 21.93 30.70 47.94 74.81 63.34 69.45 110.72 99.08 118.25 116.86 95.00 147.42 73.10 153.43 135.42 91.88 26.54 62.49 61.81 101.09 93.16 49 E12a_E13a KnownJunction 0 62.75 39.34 28.50 24.34 16.89 52.92 39.66 79.52 124.54 91.63 124.93 104.43 67.20 136.80 46.73 178.16 117.25 89.00 17.51 55.03 67.52 71.21 72.64 50 E13_Aa NovelBoundary 0 17.71 7.96 0.00 4.03 12.39 4.66 12.01 4.56 12.36 2.34 37.85 0.00 6.82 14.89 23.73 19.91 4.21 6.47 8.66 5.75 0.00 2.82 8.11 51 ER13a ExonRegion 0 55.90 27.88 28.15 35.30 42.94 69.05 57.63 78.32 127.10 101.80 139.93 89.45 83.27 151.10 87.85 160.51 122.98 98.82 42.96 66.63 75.47 108.96 103.56 52 E13a_E14a KnownJunction 0 62.97 40.78 17.44 48.84 62.05 78.08 64.21 62.02 131.51 108.31 169.25 131.89 89.12 160.63 132.89 152.52 101.45 90.37 55.81 54.14 53.19 135.51 121.22 53 ER14a ExonRegion 0 48.95 23.69 19.65 33.92 31.78 70.35 66.33 75.50 116.92 84.93 145.52 58.33 82.91 139.14 94.00 117.35 118.53 89.04 46.76 50.70 73.80 103.32 99.86 54 E14a_E15a KnownJunction 0 67.49 39.99 13.48 36.03 53.90 75.30 107.89 64.65 116.32 69.28 126.08 81.48 44.64 157.63 116.20 106.90 127.16 100.65 25.88 39.76 79.94 85.79 102.69 55 Ix Intron 0 4.74 2.64 2.63 3.52 5.12 4.31 12.33 3.35 8.17 7.53 10.53 12.86 14.57 11.70 4.95 11.38 11.56 8.67 3.45 6.60 8.75 10.15 16.75 56 Ix_SR1 SilentIntronRegion 0 4.74 2.65 2.64 3.52 5.13 4.31 12.35 3.36 8.18 7.54 10.55 12.88 14.59 11.71 4.96 11.40 11.58 8.68 3.45 6.61 8.76 10.17 16.77 57 I14 Intron 0 8.28 2.65 2.38 4.41 8.53 7.17 16.50 8.58 11.20 14.86 11.48 10.92 8.99 14.26 9.10 6.89 11.96 8.52 4.15 5.24 6.39 19.62 12.34 58 I14_SR1 SilentIntronRegion 0 8.33 2.67 2.39 4.44 8.58 7.21 16.59 8.63 11.26 14.94 11.55 10.98 9.05 14.34 9.15 6.93 12.02 8.57 4.18 5.27 6.42 19.73 12.41 59 E15_Aa NovelBoundary 0 17.56 6.25 5.41 9.16 0.00 2.73 24.47 0.00 18.03 8.35 7.42 6.30 21.91 19.42 0.00 3.93 12.90 19.36 11.20 9.46 17.17 20.51 15.02 60 ER15a ExonRegion 0 46.10 22.15 26.31 32.46 51.25 71.69 61.88 91.28 169.29 115.99 156.33 80.17 116.40 197.85 126.06 186.53 176.39 126.92 67.20 62.96 94.61 135.14 117.10 61 E15a_E16a KnownJunction 0 85.94 36.57 35.57 36.06 67.91 98.13 80.11 110.45 173.99 130.71 155.88 91.68 106.97 232.03 207.06 288.30 216.92 181.48 132.33 71.72 128.13 188.11 141.28 62 E16_Aa NovelBoundary 0 3.11 0.00 6.56 4.63 3.90 2.90 9.89 3.70 1.79 6.53 0.00 6.30 0.00 2.06 5.19 9.91 0.00 8.87 13.65 2.75 5.37 0.00 0.00 63 ER16a ExonRegion 0 63.39 31.12 38.99 49.54 83.79 88.36 81.67 118.58 191.81 131.67 179.93 86.30 127.78 206.80 149.14 248.02 173.61 121.44 62.12 73.58 101.72 150.72 124.44 64 E16a_E17a KnownJunction 1 79.13 17.50 48.70 59.80 118.51 148.55 90.75 123.80 204.25 139.63 201.89 121.09 157.13 194.83 150.69 297.36 108.09 158.31 80.94 63.53 119.97 185.54 124.97 65 E17_Aa NovelBoundary 0 3.26 11.38 5.09 18.61 11.63 5.05 18.46 2.55 1.30 24.36 0.00 0.00 19.48 0.00 0.00 10.94 8.79 13.02 7.15 2.81 11.92 2.82 0.00 66 ER17a ExonRegion 0 50.26 19.52 41.56 50.04 44.87 88.00 61.25 107.66 172.08 127.78 195.80 146.41 172.83 192.19 147.83 249.59 155.33 146.67 58.03 77.77 98.96 132.53 124.52 67 E17a_E18a KnownJunction 0 55.94 11.25 39.15 52.04 37.86 74.62 34.49 79.77 140.88 128.53 144.77 155.75 80.03 165.70 152.91 211.57 128.10 120.75 45.46 71.33 84.33 111.08 100.56 68 ER18a ExonRegion 0 47.17 18.92 32.90 43.32 48.51 76.78 55.00 62.80 118.48 95.31 170.50 90.52 119.40 165.66 119.68 164.00 129.94 121.25 39.35 64.60 100.24 77.93 101.97 69 E18a_E19a KnownJunction 0 54.82 51.37 31.31 30.07 44.65 129.19 73.31 48.39 109.37 70.30 164.41 61.37 105.19 160.34 113.98 163.38 142.12 89.58 44.33 53.75 92.60 57.87 68.97 70 ER19a ExonRegion 0 71.42 37.29 40.31 48.11 66.08 93.44 78.23 73.88 104.35 96.54 110.29 51.44 52.97 134.67 108.77 142.65 97.76 80.71 37.02 45.28 61.04 82.63 84.30 71 E19_Da KnownBoundary 0 147.29 64.07 44.94 48.68 110.70 143.78 164.68 120.06 99.39 76.96 78.07 80.43 73.53 175.59 76.52 120.91 58.91 48.33 50.35 31.32 31.69 172.62 147.76 72 ER19b ExonRegion 0 107.83 41.63 52.43 59.46 86.72 97.31 77.47 74.60 78.29 69.61 60.43 32.33 22.89 75.43 79.47 78.84 56.70 48.88 24.07 34.37 39.27 58.64 62.13 73 ER19c ExonRegion 0 0.71 0.00 0.00 0.00 1.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00