Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LUZP1 Gene 0 20.64 6.56 12.70 11.16 16.86 19.41 22.58 11.76 18.26 15.49 60.75 19.66 29.40 75.78 41.63 45.77 53.81 8.30 5.35 7.16 63.31 71.45 48.50 2 475164 Transcript 0 0.00 0.00 0.28 0.83 0.14 0.87 0.07 0.14 2.36 0.61 2.15 0.00 0.00 0.55 0.58 0.00 2.84 0.10 0.00 0.34 1.55 1.32 0.75 3 374623 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 418342 Transcript 0 2.30 1.23 0.60 2.14 2.12 0.18 7.52 0.02 2.39 0.03 0.25 0.05 0.11 0.29 2.02 0.18 1.35 0.35 0.02 0.92 1.06 0.25 1.45 5 471849 Transcript 0 4.84 0.00 1.48 1.66 3.72 0.00 5.27 0.03 2.87 0.00 11.96 3.63 11.25 6.89 11.10 9.16 20.35 2.01 0.00 2.96 22.66 6.70 11.09 6 314174 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 7 302291 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 ER1a ExonRegion 0 0.00 0.00 0.29 0.65 0.43 0.60 0.21 0.41 0.90 0.27 0.64 0.00 0.00 0.00 1.12 0.00 0.76 0.30 0.00 1.02 0.58 0.47 0.47 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 3.03 3.12 0.00 10 ER2a ExonRegion 0 0.00 0.00 0.56 1.84 0.00 2.00 0.00 0.00 6.19 1.57 0.54 0.00 0.00 1.65 0.63 0.00 2.98 0.00 0.00 0.00 1.04 0.39 1.78 11 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 1.59 0.00 0.00 0.00 0.00 2.24 0.00 0.00 8.23 0.00 0.00 0.00 0.00 0.00 0.00 12 E2_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 13 ER2b ExonRegion 0 0.00 0.31 0.00 0.21 1.65 5.08 0.20 0.00 3.42 0.00 1.49 0.00 0.00 5.50 2.68 0.00 8.89 0.00 0.00 0.65 4.24 1.60 0.90 14 E2_Ad KnownBoundary 1 16.37 10.06 4.85 8.92 21.39 22.09 10.69 3.61 4.40 9.11 44.75 0.00 0.00 58.86 15.08 22.90 90.70 4.39 21.27 14.51 73.82 49.17 76.91 15 ER2c ExonRegion 1 2.95 5.59 0.96 4.38 13.67 12.71 5.53 0.00 3.44 2.42 25.13 0.00 1.01 34.80 26.01 6.47 55.17 1.52 8.19 4.71 42.89 24.56 31.04 16 ER2d ExonRegion 1 21.58 3.47 2.52 7.00 8.13 12.01 19.94 0.95 7.82 5.01 51.77 0.00 5.33 59.39 36.18 45.98 76.11 4.13 14.37 5.26 81.32 58.54 61.61 17 E2a_E3a KnownJunction 0 9.93 0.00 1.80 3.20 0.00 0.00 9.41 0.00 3.27 0.00 11.69 0.00 0.00 2.47 16.32 11.19 21.79 2.32 0.00 2.75 27.49 9.67 11.61 18 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E2a_E4b KnownJunction 0 17.19 2.89 3.43 1.53 0.00 2.61 9.05 2.42 8.39 3.63 24.22 0.00 6.82 16.42 9.27 31.96 37.96 10.03 0.00 0.00 55.17 25.47 37.99 20 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 21 I2 Intron 0 4.36 1.02 6.98 2.41 3.52 1.43 7.54 5.35 8.88 4.03 0.47 1.45 4.00 1.15 4.75 3.31 5.88 1.53 0.95 2.21 2.45 1.58 11.17 22 I2_SR1 SilentIntronRegion 0 4.36 1.02 6.98 2.41 3.53 1.43 7.54 5.35 8.88 4.03 0.47 1.45 4.01 1.15 4.75 3.31 5.88 1.53 0.95 2.21 2.45 1.59 11.17 23 I2 Intron 0 7.09 2.62 5.88 6.28 14.82 7.56 21.32 6.63 7.82 4.40 1.00 1.48 5.97 1.33 8.79 5.74 5.95 1.30 2.46 1.92 3.97 4.02 20.42 24 I2_SR1 SilentIntronRegion 0 7.11 2.62 5.89 6.29 14.86 7.58 21.37 6.65 7.84 4.41 1.00 1.48 5.98 1.33 8.81 5.76 5.97 1.31 2.47 1.92 3.98 4.04 20.47 25 I2 Intron 0 8.97 4.31 9.49 6.44 9.13 2.82 14.63 7.16 9.17 5.18 0.61 4.52 9.17 1.45 7.07 3.79 5.66 1.31 0.74 3.07 1.80 1.86 11.16 26 I2_AR1 ActiveIntronRegion 1 10.31 7.24 18.77 10.17 8.82 4.83 22.33 10.18 20.60 12.62 0.25 3.32 19.16 1.23 8.41 3.89 7.83 0.73 0.42 5.05 2.31 3.29 24.77 27 I2_SR2 SilentIntronRegion 0 4.38 1.93 7.42 4.07 5.06 1.91 13.40 7.77 8.86 7.38 0.00 11.92 5.43 1.33 7.36 2.76 4.87 0.79 0.63 4.20 1.30 3.55 15.29 28 I2_AR2 ActiveIntronRegion 0 4.23 2.03 13.10 5.87 10.29 3.67 13.85 12.37 10.55 6.09 0.00 0.00 5.05 1.75 2.90 2.97 11.93 1.85 3.19 8.67 4.41 2.08 30.50 29 I2_AR3 ActiveIntronRegion 1 8.64 4.09 14.24 6.00 18.86 3.79 14.65 10.08 14.29 9.97 0.00 9.23 22.91 1.03 10.01 1.85 6.37 2.37 1.35 4.12 1.97 3.98 16.68 30 I2_SR3 SilentIntronRegion 0 13.34 7.96 8.91 6.48 11.19 3.96 18.43 7.49 9.25 5.35 0.58 5.65 12.68 1.98 9.06 3.51 5.81 1.31 0.53 3.26 1.39 1.45 12.11 31 I2_AR5 ActiveIntronRegion 1 18.82 13.19 10.57 15.66 22.05 3.40 23.73 10.87 13.33 10.97 0.00 11.09 23.03 3.47 7.38 2.21 1.91 1.49 0.00 5.63 0.00 2.41 6.71 32 I2_SR4 SilentIntronRegion 0 10.95 3.70 9.12 8.06 7.20 2.41 13.17 6.52 8.84 4.76 1.27 2.93 6.14 1.70 5.60 2.99 5.32 1.02 0.75 2.91 1.54 1.34 8.62 33 I2_AR6 ActiveIntronRegion 1 2.12 0.00 12.66 4.32 8.03 0.00 3.97 12.68 15.23 4.59 0.00 3.61 0.00 0.00 18.86 2.97 15.95 0.00 0.00 11.70 2.20 2.78 16.64 34 I2_AR7 ActiveIntronRegion 1 10.41 4.07 13.83 10.21 7.62 1.73 12.82 14.05 15.12 5.93 0.00 5.86 9.39 1.05 11.42 3.48 13.43 1.86 1.71 6.61 2.20 2.23 13.35 35 I2_SR5 SilentIntronRegion 0 5.83 2.34 8.72 4.60 7.85 2.48 13.02 6.12 7.26 3.75 0.59 3.73 6.39 1.12 6.53 4.64 5.50 1.37 0.75 2.30 2.15 1.79 10.65 36 I2_AR1 ActiveIntronRegion 1 7.11 2.23 5.52 3.68 5.38 2.94 14.65 2.69 6.55 3.43 0.00 3.46 19.37 1.08 5.86 3.46 4.61 0.00 1.06 2.23 0.77 1.89 4.67 37 ER3a ExonRegion 0 4.59 0.00 0.80 1.80 2.51 0.00 4.15 0.08 2.41 0.00 12.24 4.72 13.79 8.07 8.09 8.69 14.20 1.15 0.00 3.00 18.06 4.61 8.77 38 E3_Da NovelBoundary 0 0.00 0.00 5.06 7.09 0.00 0.00 5.52 8.54 15.57 4.92 0.00 18.91 0.00 0.00 0.00 0.00 8.88 0.00 0.00 2.56 0.00 0.00 10.93 39 E3a_E4b KnownJunction 0 0.00 0.00 1.83 0.00 8.66 0.00 2.25 0.00 2.92 0.00 11.95 6.15 19.97 10.12 8.90 7.60 25.06 2.57 0.00 3.13 22.43 5.82 12.89 40 ER4a ExonRegion 0 4.59 2.46 1.20 4.29 4.24 0.36 15.03 0.04 4.77 0.07 0.50 0.11 0.23 0.57 4.03 0.36 2.70 0.70 0.04 1.84 2.12 0.51 2.90 41 E4_Ab KnownBoundary 0 12.59 0.00 0.00 12.29 11.38 2.21 31.71 0.00 10.07 0.00 0.00 0.00 0.00 0.00 10.75 0.00 0.00 2.11 0.00 6.20 0.00 0.00 3.59 42 ER4b ExonRegion 1 14.94 2.23 5.16 7.31 6.04 2.31 16.44 4.97 15.67 7.33 59.39 10.51 19.47 47.93 29.84 21.37 96.32 6.86 3.16 13.78 87.81 39.29 40.05 43 E4a_E5a KnownJunction 1 10.82 3.35 4.58 4.79 4.33 5.68 1.90 8.50 21.85 11.17 117.56 0.00 65.74 78.23 49.82 47.25 155.87 10.82 0.00 11.57 122.01 62.03 61.89 44 ER5a ExonRegion 0 4.86 0.72 2.47 2.42 3.72 3.14 5.09 1.20 5.22 2.27 15.03 6.33 12.61 28.22 9.93 12.21 23.63 2.12 0.70 1.93 20.63 17.12 15.43 45 E5_Da KnownBoundary 0 6.96 0.00 0.00 7.13 4.24 0.00 0.00 0.00 3.18 0.00 5.26 0.00 0.00 9.18 0.00 4.27 3.93 0.00 0.00 0.00 13.65 2.82 8.28 46 ER5b ExonRegion 0 0.00 0.00 0.00 0.03 0.00 0.05 0.00 0.00 0.09 0.00 0.00 0.00 0.34 0.13 0.12 0.00 0.01 0.16 0.00 0.00 0.72 0.00 0.17 47 E5_Ab KnownBoundary 0 3.33 0.00 3.37 0.00 4.07 0.00 0.00 2.51 2.58 0.00 14.95 0.00 7.30 2.35 0.00 3.67 4.21 0.00 4.80 0.00 10.63 5.88 4.27 48 ER5c ExonRegion 0 3.03 2.04 2.32 2.33 3.45 6.49 5.29 2.16 9.00 5.46 18.96 6.01 15.68 35.86 10.16 17.86 23.15 5.34 1.50 1.61 32.27 24.18 20.97 49 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E5b_E7a KnownJunction 0 3.11 2.43 13.31 17.55 15.37 22.77 24.29 8.63 44.56 39.16 121.66 36.61 86.52 238.69 70.59 65.37 131.37 40.62 4.61 11.31 169.39 122.34 96.97 51 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER7a ExonRegion 0 37.22 11.93 23.18 20.01 30.51 35.16 40.44 21.72 31.90 28.08 108.30 35.20 51.03 132.74 74.58 81.62 91.76 14.50 9.61 12.54 109.42 128.14 85.00 53 ER7b ExonRegion 0 4.54 0.00 0.00 0.00 1.53 0.26 0.00 0.00 1.24 0.00 3.04 1.24 0.00 3.25 4.14 1.70 0.00 0.00 0.00 0.61 0.31 1.19 0.00