Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARHGEF19 Gene 0 9.83 2.90 10.84 5.66 6.16 9.18 5.56 14.64 12.17 14.59 4.89 0.49 1.97 4.37 4.02 2.36 3.47 6.00 6.52 4.33 16.17 13.49 18.19 2 421561 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 1.04 0.00 0.00 3 375607 Transcript 0 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 270747 Transcript 0 20.69 3.22 23.82 19.08 17.24 27.39 18.65 34.83 28.12 30.48 16.42 0.00 5.47 7.82 16.38 10.78 3.85 14.97 30.11 7.31 46.81 26.35 38.37 5 478117 Transcript 0 0.75 0.00 0.24 0.11 0.00 0.25 0.30 0.82 0.35 0.23 0.00 0.00 0.00 0.15 0.21 0.00 0.00 0.00 0.00 0.00 0.33 0.57 1.46 6 471928 Transcript 0 11.43 1.18 6.56 5.93 4.50 4.60 5.73 12.63 11.65 13.57 2.81 0.00 1.16 3.89 0.00 2.35 3.63 7.32 8.26 2.33 12.10 13.63 6.36 7 449495 Transcript 0 1.65 0.00 0.00 0.00 4.61 11.82 4.49 0.00 0.27 0.76 0.00 0.00 0.00 1.26 0.00 0.00 0.00 1.23 2.65 0.00 3.06 0.00 2.12 8 441785 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 478210 Transcript 0 0.00 0.00 1.12 1.37 0.00 0.00 0.00 2.51 1.10 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 4.10 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 2.08 0.00 0.00 11 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 2.97 0.00 0.00 12 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 1.37 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.33 0.99 0.00 13 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER2a ExonRegion 0 0.00 0.00 0.21 0.23 0.62 0.88 0.00 0.60 4.42 0.04 0.00 0.00 0.00 0.00 0.24 0.69 0.00 1.27 0.00 0.48 5.42 0.48 0.34 15 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.27 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 0.00 16 ER3a ExonRegion 0 0.00 0.00 0.66 0.37 0.00 0.61 0.00 1.43 5.22 2.32 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.50 0.62 1.22 2.70 0.00 1.06 17 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 5.99 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.22 0.00 0.00 18 ER4a ExonRegion 0 0.00 0.00 0.39 1.01 0.00 1.78 0.00 2.57 3.68 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 1.45 0.93 5.22 0.47 0.00 19 E4a_E5a KnownJunction 0 0.00 0.00 1.77 0.00 0.00 4.83 0.00 0.00 3.12 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 2.47 3.12 0.00 20 ER5a ExonRegion 0 1.15 0.00 0.88 1.01 0.00 3.69 0.00 2.78 3.63 1.34 0.00 0.00 0.00 0.89 0.00 0.00 0.00 1.01 2.11 0.17 3.18 3.52 9.50 21 E5a_E6a KnownJunction 0 0.00 0.00 1.27 1.66 0.00 0.00 0.00 2.14 4.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.16 22 ER6a ExonRegion 0 1.10 0.49 2.59 0.65 1.51 4.97 0.26 2.39 3.13 1.42 0.01 0.00 0.00 0.02 1.15 0.00 0.00 0.07 0.91 1.02 6.40 5.21 4.18 23 E6_Ab KnownBoundary 0 5.85 2.96 2.78 0.00 0.00 5.05 2.12 6.94 3.44 1.45 0.00 0.00 0.00 0.00 5.81 0.00 0.00 0.00 0.00 0.00 10.56 12.25 3.33 24 E6_Ac KnownBoundary 0 36.52 6.31 15.73 2.00 11.80 18.80 6.18 2.55 3.18 3.30 5.32 0.00 0.00 2.41 0.00 0.00 0.00 9.12 9.60 0.00 20.02 20.27 23.47 25 ER6b ExonRegion 0 12.19 4.98 6.59 1.36 6.46 9.55 4.70 2.62 4.77 2.29 1.93 0.00 0.00 2.97 2.90 0.00 0.11 4.21 6.37 0.00 19.83 18.32 15.39 26 ER6c ExonRegion 0 27.33 3.95 7.35 1.36 5.27 13.54 2.65 2.85 4.07 4.25 3.01 0.00 0.00 4.30 3.93 0.00 3.30 6.58 3.56 2.00 12.44 8.15 13.21 27 E6a_E7c KnownJunction 0 31.71 3.29 9.31 1.43 0.00 18.51 0.00 4.60 4.28 4.84 2.63 0.00 0.00 2.41 4.45 0.00 4.39 8.42 0.00 3.20 6.18 3.12 8.37 28 E7_Ab NovelBoundary 0 3.26 0.00 0.00 2.80 7.13 26.35 8.04 0.00 0.00 1.13 0.00 0.00 0.00 2.47 0.00 0.00 0.00 3.69 12.80 2.68 2.59 0.00 3.67 29 ER7a ExonRegion 0 1.65 0.00 0.00 0.00 4.61 11.82 4.49 0.00 0.27 0.76 0.00 0.00 0.00 1.26 0.00 0.00 0.00 1.23 2.65 0.00 3.06 0.00 2.12 30 ER7b ExonRegion 0 3.11 0.57 2.17 0.97 3.24 8.04 4.85 2.28 4.79 8.29 2.11 0.00 0.00 1.41 0.03 0.81 2.40 1.40 6.23 1.86 6.08 3.44 8.08 31 E7_Ac KnownBoundary 0 3.78 0.00 8.63 3.63 0.00 0.00 3.84 11.50 13.83 11.47 7.48 0.00 0.00 7.42 0.00 0.00 4.58 2.53 25.98 5.56 14.58 0.00 3.67 32 ER7c ExonRegion 0 5.82 0.23 12.13 4.10 7.76 19.24 5.51 17.54 15.28 20.03 3.59 2.87 4.13 2.55 3.63 1.89 5.30 6.02 8.32 3.31 14.54 12.93 22.15 33 E7a_E8a KnownJunction 0 0.00 0.00 16.68 3.76 11.38 31.57 16.61 20.21 19.44 24.01 2.68 6.30 15.10 11.18 0.00 3.33 4.77 8.50 4.71 3.00 20.82 24.74 31.58 34 ER8a ExonRegion 0 7.86 4.24 14.98 4.62 4.63 19.48 9.26 23.34 16.45 27.00 8.57 1.75 5.55 9.27 3.66 2.70 8.16 9.56 9.12 6.87 26.73 25.38 31.84 35 E8_Da KnownBoundary 0 3.33 0.00 1.39 2.03 0.00 4.43 6.45 6.90 5.01 4.19 0.00 0.00 0.00 0.00 4.45 3.59 0.00 0.00 0.00 3.26 2.35 0.00 0.00 36 E8a_E8b KnownJunction 0 17.04 6.64 8.96 0.00 11.29 0.00 3.40 21.69 14.35 13.67 7.48 0.00 21.91 4.83 0.00 4.36 8.42 4.06 7.62 0.00 25.95 20.21 32.52 37 E8a_E9a KnownJunction 0 0.00 0.00 1.12 1.37 0.00 0.00 0.00 2.51 1.10 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 4.10 38 E8a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E8a_E16b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER8b ExonRegion 0 2.56 0.00 4.54 1.18 0.10 7.92 2.68 4.00 6.39 8.43 1.20 0.00 0.00 2.30 0.21 1.81 1.61 3.06 2.37 2.13 3.63 10.32 7.06 41 E8_Db KnownBoundary 0 6.89 0.00 7.48 7.16 0.00 8.18 0.00 12.73 13.69 17.43 0.00 0.00 0.00 2.53 0.00 3.50 3.93 9.53 9.22 0.00 5.31 13.41 3.41 42 ER8c ExonRegion 0 11.43 1.18 6.56 5.93 4.50 4.60 5.73 12.63 11.65 13.57 2.81 0.00 1.16 3.89 0.00 2.35 3.63 7.32 8.26 2.33 12.10 13.63 6.36 43 E8_Ab KnownBoundary 0 2.96 0.00 3.02 0.00 0.00 5.05 6.49 15.73 13.51 9.80 5.26 0.00 0.00 0.00 0.00 3.25 4.77 6.30 4.80 2.36 21.37 5.45 15.88 44 ER8d ExonRegion 0 11.43 8.34 10.02 4.91 6.35 9.90 10.86 28.99 21.58 21.82 10.05 3.57 12.55 6.82 1.23 2.60 18.73 10.30 15.53 1.44 42.37 26.20 39.50 45 E8_Dc KnownBoundary 0 14.22 9.34 18.27 15.82 8.66 18.11 13.43 28.34 29.08 34.54 10.21 5.85 6.82 15.30 4.45 11.45 25.43 13.18 22.21 3.26 39.35 36.50 33.04 46 ER8e ExonRegion 0 19.71 7.91 19.76 8.99 8.15 22.79 10.62 24.33 19.47 29.05 9.30 0.44 3.27 15.37 9.45 3.74 5.86 21.72 16.18 8.06 46.35 30.18 37.09 47 E8d_E9a KnownJunction 0 33.27 11.58 25.46 8.76 12.56 30.55 8.52 21.15 22.37 38.20 10.11 0.00 19.80 14.30 15.70 4.19 4.68 16.33 21.46 8.63 29.78 15.98 35.43 48 E9_Aa NovelBoundary 0 0.00 0.00 0.00 2.06 4.33 7.15 5.17 0.00 4.98 3.25 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.87 49 ER9a ExonRegion 0 17.58 10.87 22.68 7.27 15.52 17.48 9.48 31.32 26.37 33.93 13.27 2.42 7.94 9.18 5.65 10.70 13.86 18.80 29.98 3.18 35.76 39.17 52.12 50 E9_Da NovelBoundary 0 0.00 0.00 5.59 2.06 4.33 0.00 2.25 4.48 6.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 3.26 9.45 2.27 0.00 51 E9a_E10a KnownJunction 0 24.67 5.53 36.46 12.39 14.52 29.24 15.10 30.03 35.53 39.22 13.21 0.00 0.00 9.59 6.06 3.93 8.79 18.36 8.66 2.75 36.63 31.60 37.82 52 E10_Aa NovelBoundary 0 0.00 0.00 3.64 3.63 0.00 2.61 0.00 4.93 7.26 2.82 2.32 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 2.62 2.35 0.00 16.05 53 ER10a ExonRegion 0 20.04 6.42 33.25 16.22 24.62 20.99 14.36 26.27 28.94 42.75 12.18 0.00 5.78 11.13 12.31 7.27 5.72 20.72 20.35 9.29 44.15 36.35 49.07 54 E10a_E11a KnownJunction 0 24.89 2.83 20.82 14.15 35.14 33.67 11.22 30.48 38.19 53.05 24.53 0.00 6.49 17.60 8.90 12.39 22.16 23.46 24.94 9.01 48.87 24.55 28.68 55 ER11a ExonRegion 0 21.38 3.25 22.12 16.63 22.74 19.81 10.19 28.78 33.35 51.15 32.38 0.00 2.11 10.39 8.12 8.92 13.86 17.65 18.32 10.32 44.18 26.56 34.65 56 ER11b ExonRegion 0 12.89 7.61 28.67 20.70 14.31 13.48 11.95 23.87 38.89 28.32 14.51 0.00 4.43 8.08 3.88 6.18 3.93 8.89 11.10 11.00 36.87 37.64 47.88 57 E11_Db KnownBoundary 0 26.60 2.57 38.38 22.04 20.12 28.56 14.26 20.13 27.34 26.75 10.32 0.00 0.00 7.18 6.18 7.60 0.00 6.63 20.42 8.44 43.43 54.19 65.64 58 ER11c ExonRegion 0 19.66 2.15 26.30 18.43 21.10 22.64 16.32 25.89 24.23 25.36 17.43 0.00 4.69 9.40 18.58 3.09 2.73 7.64 16.54 7.65 43.14 35.66 36.48 59 E11c_E12a KnownJunction 0 18.52 0.00 21.32 19.11 23.09 32.25 20.05 38.16 26.22 29.31 20.64 0.00 6.66 9.42 16.69 12.30 3.65 12.68 32.00 5.56 36.14 26.33 41.91 60 E11c_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER12a ExonRegion 0 22.86 6.45 26.33 19.04 11.39 22.53 17.25 31.51 30.03 31.65 12.20 0.00 4.29 6.22 16.08 9.26 4.06 17.26 28.21 9.06 57.49 26.37 34.82 62 E12_Ab KnownBoundary 0 30.23 15.33 35.01 23.57 7.81 27.09 18.81 26.94 33.45 36.91 7.21 0.00 0.00 4.83 14.22 7.01 4.49 20.35 26.64 14.70 66.41 27.19 34.49 63 ER12b ExonRegion 0 15.16 8.30 31.57 10.82 17.20 17.91 13.95 22.68 25.58 21.99 9.10 1.47 2.42 7.87 7.98 3.64 4.50 16.85 7.55 12.10 35.60 21.69 45.90 64 E12_Da NovelBoundary 0 13.56 0.00 1.24 1.80 3.57 2.61 2.25 2.09 1.13 3.89 0.00 0.00 0.00 0.00 4.82 0.00 0.00 2.57 8.28 2.56 0.00 0.00 3.84 65 E12a_E13a KnownJunction 0 6.82 6.51 36.01 10.92 14.69 12.27 14.62 27.31 22.37 25.68 7.48 0.00 12.82 4.41 18.30 0.00 0.00 11.28 12.14 17.58 58.19 25.53 26.55 66 E13_Aa NovelBoundary 0 6.89 0.00 3.67 3.60 0.00 2.67 0.00 0.00 8.68 3.84 2.63 0.00 0.00 0.00 0.00 0.00 3.83 12.44 0.00 3.26 8.28 0.00 7.94 67 ER13a ExonRegion 0 8.97 9.76 26.61 9.66 14.92 22.85 11.57 25.30 15.59 17.68 12.32 2.27 6.10 7.92 11.53 3.57 4.87 9.63 3.15 9.60 34.07 18.18 37.74 68 E13_Da NovelBoundary 0 10.08 3.22 17.09 3.03 3.99 5.00 6.49 17.17 4.05 4.94 2.68 0.00 6.01 5.53 0.00 0.00 0.00 2.57 4.42 2.68 8.53 3.12 11.61 69 E13a_E15a KnownJunction 0 24.45 15.39 36.55 13.75 11.97 18.91 16.12 24.19 11.23 8.03 10.84 0.00 7.47 4.83 4.45 3.25 24.03 7.01 4.80 5.75 31.82 18.00 56.77 70 I13 Intron 0 1.85 1.33 6.77 2.21 2.33 3.60 3.46 8.98 7.62 8.57 2.11 0.00 0.00 4.31 1.34 0.65 0.72 3.60 4.86 3.25 11.04 4.09 9.60 71 I13_SR1 SilentIntronRegion 0 1.85 1.34 6.79 2.22 2.34 3.61 3.48 9.02 7.65 8.60 2.12 0.00 0.00 4.33 1.34 0.65 0.72 3.62 4.88 3.26 11.08 4.10 9.63 72 ER14a ExonRegion 0 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 E15_Aa NovelBoundary 0 12.45 0.00 6.56 5.36 4.07 2.33 3.44 21.77 5.24 6.53 0.00 0.00 0.00 4.77 21.14 0.00 0.00 8.50 0.00 3.26 13.96 0.00 16.39 74 ER15a ExonRegion 0 34.43 8.00 29.34 15.21 14.58 20.77 12.26 25.37 13.82 19.61 15.98 1.94 5.45 10.64 9.78 4.36 10.97 10.08 9.40 10.92 22.98 22.11 40.50 75 E15a_E16a KnownJunction 0 18.08 2.96 27.94 12.79 12.90 7.84 12.41 37.34 9.40 22.24 7.37 13.95 6.17 4.77 6.30 0.00 0.00 14.76 4.80 11.51 25.95 14.51 30.30 76 E16_Aa NovelBoundary 0 7.33 0.00 8.07 0.00 3.48 2.90 15.72 8.01 0.00 8.89 0.00 0.00 0.00 0.00 13.60 0.00 0.00 0.00 0.00 0.00 3.15 2.45 8.02 77 ER16a ExonRegion 0 36.99 7.07 22.09 15.13 13.27 16.72 19.16 39.38 12.09 29.33 10.09 1.97 5.90 10.15 11.92 6.15 12.06 15.64 16.24 18.24 37.11 14.77 31.14 78 E16_Ab KnownBoundary 0 37.78 6.38 16.23 10.02 7.81 13.46 10.02 17.09 8.56 23.16 0.00 0.00 0.00 0.00 4.57 0.00 0.00 2.57 4.61 11.76 12.73 3.12 8.19 79 E16_Ac KnownBoundary 0 25.19 6.18 5.14 2.06 15.62 10.73 13.69 18.36 6.97 9.54 7.74 0.00 0.00 4.36 0.00 0.00 12.44 4.31 0.00 2.81 14.39 10.47 23.65 80 ER16b ExonRegion 0 40.82 10.75 15.75 9.93 19.11 20.17 22.70 24.20 13.76 32.60 13.81 0.00 4.02 12.99 9.12 0.00 10.85 3.70 3.19 11.55 26.44 20.84 31.04 81 ER16c ExonRegion 0 35.39 8.62 17.72 7.03 21.94 15.84 16.47 37.61 14.94 30.81 14.07 0.00 0.00 12.02 13.40 0.00 9.51 8.57 6.18 14.98 26.58 26.04 47.57 82 E16_Da KnownBoundary 0 72.38 8.62 27.85 9.36 23.68 12.89 3.84 54.63 18.37 26.94 7.42 0.00 0.00 7.59 31.77 0.00 7.95 21.89 7.25 14.32 32.68 26.45 49.43 83 ER16d ExonRegion 0 19.68 4.61 18.47 11.60 8.12 9.55 6.48 35.13 22.13 30.30 6.79 0.00 2.13 7.79 8.24 4.71 4.30 6.96 9.52 6.40 18.49 25.71 28.11 84 E16_Db KnownBoundary 0 16.08 0.00 2.48 2.06 0.00 7.95 1.85 9.90 4.95 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 9.31 27.32 85 ER16e ExonRegion 0 1.50 0.01 0.48 0.22 0.00 0.51 0.60 1.63 0.70 0.45 0.00 0.00 0.00 0.29 0.42 0.00 0.00 0.00 0.00 0.00 0.67 1.13 2.91