Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CROCCL2 Gene 0 37.56 35.23 34.32 53.71 61.63 92.25 63.39 64.45 59.71 73.87 6.84 8.92 9.61 8.68 9.51 9.83 11.10 46.26 28.68 44.20 21.86 16.40 33.32 2 263511 Transcript 0 9.55 9.29 28.45 25.87 16.65 30.09 22.22 36.63 32.67 35.43 4.89 3.34 3.22 6.01 3.52 4.64 6.76 43.64 12.92 22.90 16.47 9.06 18.66 3 420820 Transcript 0 0.91 2.70 5.64 4.75 2.43 6.89 2.39 4.74 7.14 8.94 1.48 0.59 0.50 0.88 0.21 0.69 1.90 11.26 3.31 5.65 3.90 1.49 2.98 4 ER1a ExonRegion 0 48.20 54.24 41.57 41.44 48.46 47.50 67.81 63.14 51.33 49.05 17.90 22.28 25.43 18.55 35.52 42.70 44.14 69.68 62.39 71.63 35.85 24.92 68.58 5 E1_Da NovelBoundary 0 23.26 31.51 38.50 24.21 43.38 29.07 56.04 74.67 54.40 35.16 5.00 5.85 7.14 7.18 10.88 11.19 0.00 54.22 48.10 32.85 27.74 16.10 55.23 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 2.18 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.20 0.00 0.00 0.00 0.00 0.00 7 I1 Intron 0 10.14 8.03 22.30 21.15 22.10 26.13 29.01 57.36 40.54 45.83 4.63 3.41 7.23 5.71 4.07 7.47 8.30 70.71 37.38 36.68 17.67 12.47 46.06 8 I1_SR1 SilentIntronRegion 0 10.16 8.05 22.35 21.20 22.16 26.19 29.07 57.49 40.64 45.94 4.64 3.42 7.25 5.72 4.08 7.49 8.32 70.88 37.47 36.77 17.71 12.50 46.16 9 E2_Aa NovelBoundary 0 6.00 2.43 19.40 4.69 0.00 23.74 25.08 25.14 11.14 12.44 2.16 0.00 12.50 0.00 0.00 0.00 0.00 25.70 9.60 14.51 22.30 5.88 36.28 10 E2_Ab NovelBoundary 0 3.19 5.46 13.69 9.79 3.82 14.42 16.74 23.45 10.97 21.14 0.00 0.00 8.28 0.00 0.00 15.89 0.00 21.14 13.08 5.94 11.68 2.45 20.49 11 ER2a ExonRegion 0 0.00 6.10 7.11 1.36 1.61 5.13 4.24 8.64 3.83 4.13 0.00 0.00 0.47 0.00 0.00 0.00 0.00 8.50 0.96 3.62 1.76 0.00 2.94 12 ER2b ExonRegion 0 1.72 5.28 11.57 3.64 5.27 10.46 11.38 19.53 10.76 10.74 3.46 3.34 0.09 4.20 2.70 2.77 4.44 16.15 9.65 13.25 9.08 4.21 8.49 13 E2_Da NovelBoundary 0 3.78 9.14 25.10 8.52 0.00 13.34 2.08 15.77 8.01 23.50 4.47 0.00 0.00 6.77 6.30 3.33 8.79 22.05 4.42 12.27 14.95 2.82 7.43 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E2_Db NovelBoundary 0 3.63 5.92 22.38 6.86 3.99 5.45 4.20 13.92 6.48 21.36 5.26 0.00 0.00 0.00 0.00 0.00 3.83 29.27 4.80 8.95 11.86 2.33 4.18 16 E2b_E3b KnownJunction 0 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.60 0.00 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2c ExonRegion 0 2.12 1.02 3.37 2.18 0.00 0.09 0.73 0.69 0.43 4.24 2.22 0.00 0.00 1.79 2.18 1.19 2.81 3.42 0.00 1.70 4.08 0.00 0.73 18 I2 Intron 0 13.05 1.14 8.19 3.41 12.00 9.25 17.81 24.54 15.47 15.33 2.17 0.00 0.00 2.41 1.15 6.66 1.85 29.87 10.71 15.50 3.71 3.50 18.10 19 I2_AR1 ActiveIntronRegion 0 13.27 1.14 8.34 3.48 12.21 9.44 18.13 25.01 15.81 15.63 2.22 0.00 0.00 2.46 1.17 6.81 1.89 30.46 10.92 15.78 3.79 3.58 18.51 20 E3_Aa NovelBoundary 0 0.00 0.00 25.84 15.72 7.81 2.61 12.45 16.43 12.64 15.26 0.00 0.00 0.00 4.47 0.00 0.00 0.00 16.75 18.35 8.05 10.01 2.27 8.02 21 E3_Ab NovelBoundary 0 7.41 3.09 15.97 13.75 10.36 17.77 12.94 11.34 9.52 17.54 2.68 0.00 6.82 7.18 0.00 0.00 0.00 24.17 4.80 11.63 8.96 12.19 29.11 22 ER3a ExonRegion 0 0.00 0.00 3.12 1.61 7.05 7.84 1.20 2.83 2.47 4.07 0.00 1.57 4.69 2.81 0.26 0.00 0.00 1.68 0.00 4.84 4.21 0.00 4.81 23 ER3b ExonRegion 0 1.26 5.50 12.17 9.96 4.45 18.04 12.02 11.59 8.46 8.77 1.41 1.87 2.03 5.77 6.94 2.05 0.67 19.90 8.26 12.45 12.89 3.58 11.55 24 E3_Da NovelBoundary 0 0.00 6.45 2.66 0.00 3.82 14.82 6.49 11.42 7.00 11.85 0.00 0.00 0.00 2.47 0.00 0.00 0.00 9.58 4.42 8.25 14.15 0.00 16.30 25 E3a_E4a KnownJunction 0 2.82 0.00 18.54 7.19 0.00 13.23 2.08 8.71 12.56 4.54 0.00 0.00 0.00 5.06 4.45 0.00 4.30 19.69 4.52 5.31 6.30 5.14 3.84 26 E4_Aa NovelBoundary 0 7.26 9.41 9.76 7.56 11.63 7.04 8.30 11.95 21.09 15.85 2.47 0.00 0.00 4.59 0.00 0.00 0.00 17.37 3.58 8.37 16.49 3.00 4.18 27 ER4a ExonRegion 0 3.72 0.62 30.50 13.08 5.96 17.92 13.52 25.09 27.89 26.62 3.06 1.54 2.95 9.95 2.99 2.73 2.77 35.55 11.35 32.29 23.35 9.07 28.80 28 E4a_E5a KnownJunction 0 0.00 2.70 49.91 30.40 11.04 18.17 17.22 49.66 55.03 50.47 0.00 6.30 0.00 2.30 0.00 0.00 4.39 55.92 13.08 27.61 22.55 8.14 20.49 29 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER4b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.13 0.00 0.00 2.94 31 ER5a ExonRegion 0 4.11 10.73 38.64 22.45 11.46 39.57 16.56 40.15 54.73 60.30 6.87 0.52 3.56 12.46 5.87 2.88 6.12 64.48 29.36 43.22 44.05 10.93 31.83 32 E5_Da NovelBoundary 0 0.00 2.43 0.00 0.00 3.57 0.00 8.61 0.00 5.79 16.52 0.00 0.00 0.00 0.00 0.00 0.00 3.74 8.46 0.00 30.62 0.00 0.00 8.71 33 E5a_E6a KnownJunction 0 0.00 3.16 15.11 22.01 8.06 14.31 2.12 16.88 29.31 16.76 5.32 0.00 0.00 2.53 0.00 0.00 14.21 32.87 8.66 18.92 5.93 8.57 8.88 34 E5a_E7a KnownJunction 0 3.48 5.85 23.12 10.82 11.88 36.80 10.42 25.06 30.44 26.16 0.00 0.00 0.00 5.12 0.00 0.00 9.54 43.53 12.71 15.28 20.57 2.76 24.16 35 ER6a ExonRegion 0 3.71 9.70 20.85 15.07 8.30 26.87 14.17 18.41 22.90 27.82 3.48 6.04 1.81 4.44 1.92 3.30 5.66 24.48 11.81 28.73 17.93 6.38 15.09 36 E6a_E7a KnownJunction 0 7.26 19.34 25.37 14.88 4.41 20.05 6.40 8.95 18.61 25.01 5.42 0.00 0.00 0.00 0.00 4.44 4.77 24.83 4.24 9.72 11.86 3.12 0.00 37 ER7a ExonRegion 0 5.56 10.73 56.05 31.74 9.20 50.30 22.98 55.76 53.61 59.12 10.06 5.23 4.17 13.34 6.99 6.08 14.87 89.71 21.88 34.05 41.59 9.72 36.76 38 E7_Da NovelBoundary 0 19.78 2.63 19.43 32.73 11.46 33.28 23.54 42.47 39.50 64.31 31.17 0.00 12.82 36.49 25.84 62.55 50.40 15.21 17.69 18.98 27.92 32.70 26.04 39 E7a_E8a KnownJunction 0 3.78 0.00 61.17 42.15 10.87 25.16 5.96 58.04 48.18 57.43 0.00 0.00 0.00 2.35 0.00 0.00 4.49 97.46 13.46 12.66 7.66 10.72 26.46 40 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E8_Ab NovelBoundary 0 0.00 3.29 10.44 4.69 0.00 7.72 14.13 6.57 2.37 22.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.47 0.00 0.00 7.85 0.00 6.91 42 ER8a ExonRegion 0 15.87 8.13 75.36 57.24 21.41 61.43 21.85 89.88 80.28 80.28 7.73 17.32 0.00 12.99 2.90 5.94 18.15 152.44 27.08 31.91 39.67 22.92 44.05 43 ER8b ExonRegion 0 13.08 14.94 50.86 45.22 15.18 54.57 27.32 80.29 70.06 77.57 12.68 2.78 8.39 15.20 8.12 7.79 12.47 125.90 32.49 31.29 40.01 17.37 30.54 44 E8a_E9a KnownJunction 0 7.26 11.45 47.37 29.37 7.22 27.82 21.95 35.08 38.43 30.11 8.42 0.00 20.29 0.00 4.45 0.00 0.00 90.16 8.09 15.21 10.19 11.82 35.25 45 E8a_E10a NovelJunction 0 0.00 5.92 30.84 40.95 12.39 21.81 21.90 15.81 28.96 31.75 4.47 0.00 0.00 0.00 0.00 3.59 4.68 46.05 16.09 29.53 8.90 0.00 26.29 46 ER9a ExonRegion 0 4.74 11.52 31.39 17.05 6.63 48.22 26.32 47.61 39.82 45.52 12.47 0.00 1.90 9.40 7.01 9.09 13.95 74.06 19.15 26.90 19.44 27.98 34.54 47 E9a_E10a KnownJunction 0 6.59 15.46 30.96 8.92 0.00 21.52 23.19 65.23 27.55 34.92 2.58 0.00 5.84 17.25 5.19 0.00 12.16 74.95 13.18 22.24 18.16 12.98 29.54 48 ER10a ExonRegion 0 6.36 9.98 26.33 26.92 9.90 41.65 21.50 55.77 39.54 48.31 1.74 0.00 1.70 12.40 5.90 8.90 4.34 58.25 16.70 28.95 22.44 10.65 20.75 49 E10a_E11a KnownJunction 0 9.41 11.58 39.24 22.11 21.31 50.26 37.05 68.43 55.01 62.16 2.68 0.00 0.00 16.95 0.00 6.58 0.00 66.49 26.64 51.84 33.85 6.25 23.30 50 ER11a ExonRegion 0 5.99 9.76 43.16 25.26 15.69 45.99 27.25 64.03 43.77 65.26 1.68 4.55 1.97 12.92 6.12 3.42 8.63 43.37 23.06 41.01 25.34 10.67 22.29 51 E11a_E12a KnownJunction 0 7.04 9.08 42.72 30.47 24.62 45.26 33.61 49.33 34.49 60.84 2.00 0.00 6.98 21.54 0.00 3.76 11.97 51.44 17.51 48.19 32.25 9.31 18.87 52 E11b_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER11b ExonRegion 0 0.00 2.03 0.00 0.00 2.68 3.67 2.65 3.46 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 3.19 0.00 0.00 0.00 0.00 54 I11 Intron 0 5.54 5.61 6.98 10.28 7.10 9.02 14.71 15.40 9.64 13.31 0.41 1.57 2.25 1.22 1.81 1.47 0.82 12.35 6.20 6.40 3.35 2.73 9.56 55 I11_SR1 SilentIntronRegion 0 5.55 5.62 6.99 10.30 7.11 9.03 14.73 15.43 9.66 13.33 0.41 1.57 2.25 1.22 1.81 1.47 0.82 12.37 6.21 6.41 3.36 2.73 9.58 56 E12_Aa NovelBoundary 0 10.89 3.35 1.83 12.72 4.16 10.96 7.91 12.49 13.89 13.08 0.00 5.40 0.00 0.00 0.00 0.00 3.55 10.90 4.24 3.13 5.68 8.08 4.18 57 ER12a ExonRegion 0 13.58 10.81 45.10 28.90 10.42 43.16 34.91 42.34 31.64 62.64 4.37 1.02 4.90 13.07 6.57 5.56 10.16 54.26 27.52 29.99 34.34 10.16 24.94 58 E12a_E13a KnownJunction 0 0.00 0.00 1.71 0.00 0.00 7.27 0.00 0.00 7.93 30.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.02 9.41 5.75 5.93 0.00 4.10 59 E12b_E13b KnownJunction 0 5.85 2.43 38.08 42.95 4.33 8.69 29.99 53.72 33.94 14.53 16.90 0.00 0.00 5.42 4.45 0.00 0.00 40.13 0.00 9.40 12.36 7.78 11.87 60 ER12b ExonRegion 0 4.23 4.07 38.23 40.89 4.82 33.38 25.16 50.13 38.78 48.40 17.40 0.00 0.00 6.50 4.06 6.54 0.00 70.21 24.21 22.55 26.89 6.25 14.68 61 ER13a ExonRegion 0 0.85 0.81 7.11 8.18 1.07 9.54 4.50 11.06 8.89 11.24 5.03 0.00 0.00 1.62 0.58 1.19 0.00 18.11 5.73 3.40 4.85 1.25 2.94 62 ER13b ExonRegion 0 2.20 3.87 36.98 24.23 4.76 30.55 16.56 31.50 33.14 42.48 7.57 1.26 2.74 9.71 3.34 4.25 3.51 35.59 19.49 20.27 18.10 8.93 20.07 63 E13_Da NovelBoundary 0 18.60 6.45 13.16 38.02 24.28 36.00 19.83 33.23 26.07 51.95 2.68 0.00 0.00 2.47 4.45 4.27 8.32 37.10 4.80 18.92 5.99 4.84 8.45 64 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 E13a_E15a NovelJunction 0 0.00 0.00 2.72 0.00 0.00 0.00 2.25 6.74 2.98 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.83 0.00 5.69 0.00 0.00 12.38 66 I13 Intron 0 1.02 2.44 9.42 18.28 3.21 9.02 4.77 6.49 10.38 9.64 1.16 0.00 0.00 0.16 1.11 2.50 0.79 9.81 8.03 2.04 3.43 1.75 7.05 67 I13_SR1 SilentIntronRegion 0 1.02 2.45 9.47 18.37 3.23 9.06 4.79 6.52 10.43 9.68 1.17 0.00 0.00 0.16 1.11 2.51 0.80 9.85 8.07 2.05 3.45 1.76 7.08 68 E14_Aa NovelBoundary 0 10.08 3.09 12.21 18.41 3.99 14.25 21.46 21.15 12.99 38.28 0.00 0.00 0.00 4.94 0.00 4.36 0.00 35.19 4.42 5.94 9.20 2.51 0.00 69 ER14a ExonRegion 0 1.70 6.98 32.38 22.04 5.35 13.41 12.25 33.30 35.97 39.99 4.27 0.00 2.92 8.72 2.38 3.25 1.96 32.98 11.09 23.75 13.83 6.27 14.49 70 E14_Da NovelBoundary 0 0.00 2.96 14.81 17.88 12.05 16.41 2.25 22.59 33.30 21.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.45 21.74 6.33 8.71 0.00 16.73 71 E14a_E15a KnownJunction 0 3.56 6.05 27.14 24.34 17.15 21.58 28.26 37.09 42.71 38.90 7.42 0.00 6.66 6.53 0.00 3.85 4.21 46.55 3.58 38.86 26.32 19.29 20.40 72 E14a_E15b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 E15_Ab NovelBoundary 0 0.00 2.63 9.96 17.28 7.47 14.71 12.63 16.63 15.91 20.55 4.26 0.00 0.00 2.47 0.00 11.54 4.02 19.98 0.00 26.46 12.60 9.92 9.65 74 ER15a ExonRegion 0 2.12 3.81 31.25 18.74 13.04 21.09 19.36 32.41 37.67 32.83 4.11 0.00 4.69 7.92 0.36 2.97 4.13 23.79 3.98 36.97 24.79 16.41 13.95 75 ER15b ExonRegion 0 4.51 8.16 25.94 26.73 13.74 41.56 22.46 25.58 28.09 33.72 4.95 1.31 3.17 9.59 4.09 4.58 4.18 31.04 14.57 26.27 17.23 9.38 14.26 76 E15_Da KnownBoundary 0 44.16 2.70 65.93 63.76 88.96 187.62 109.30 84.53 81.51 161.60 34.96 7.35 0.00 23.84 32.76 76.56 72.56 97.50 58.54 46.92 58.69 52.91 45.24 77 ER15c ExonRegion 0 6.58 3.73 11.80 12.19 8.35 40.20 17.92 18.14 18.49 28.21 2.34 0.19 0.00 6.37 4.53 7.28 5.73 32.59 13.48 20.01 9.69 6.39 17.88 78 E15_Db NovelBoundary 0 0.00 6.58 16.94 19.94 7.64 13.34 13.65 30.48 36.54 36.77 6.42 0.00 0.00 9.83 0.00 0.00 4.77 50.70 12.05 15.21 8.77 5.63 10.93 79 E15b_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80 I15 Intron 0 16.92 18.22 18.05 27.12 39.02 58.25 42.11 39.15 35.82 50.82 3.31 4.13 6.07 6.74 4.73 3.92 4.35 24.50 17.77 25.52 13.26 12.45 14.83 81 I15_SR1 SilentIntronRegion 0 2.62 4.19 7.28 8.65 25.75 14.63 21.48 10.98 4.55 14.33 1.59 1.47 0.64 1.23 3.93 2.45 2.27 7.45 10.51 4.68 6.36 4.58 4.44 82 I15_AR1 ActiveIntronRegion 0 16.82 17.39 18.92 15.94 12.38 35.05 28.50 23.83 29.81 42.63 4.28 1.38 1.55 9.51 4.65 5.68 5.31 41.39 15.38 26.11 21.06 8.38 18.91 83 I15_SR2 SilentIntronRegion 0 35.98 38.25 30.72 71.62 104.52 157.54 93.87 103.89 87.88 113.75 3.85 12.57 21.35 9.00 5.96 2.69 5.37 16.64 31.68 51.95 8.37 30.16 21.24 84 E16_Aa NovelBoundary 0 70.53 67.69 62.09 115.24 190.75 262.12 280.92 149.35 136.80 168.99 7.00 12.00 13.64 21.54 0.00 11.02 7.57 112.71 47.81 110.32 19.34 12.74 85.96 85 ER16a ExonRegion 0 59.48 50.73 32.76 80.60 105.47 147.08 95.24 82.93 79.79 102.13 5.09 10.61 10.57 4.71 5.90 4.73 5.38 36.02 27.27 48.87 15.64 19.17 32.15