Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf144 Gene 0 119.44 70.82 92.34 70.18 110.20 175.07 153.72 126.86 77.14 190.64 545.68 177.29 210.29 540.20 478.04 539.61 414.16 96.87 92.86 64.46 365.32 306.15 279.92 2 475078 Transcript 0 0.11 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.19 0.59 0.34 0.73 0.00 1.58 0.32 0.32 1.21 0.28 0.00 0.11 0.23 0.21 0.30 3 401088 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 471507 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 401089 Transcript 0 25.82 4.41 26.48 11.35 8.79 16.24 11.24 35.21 26.95 80.92 87.30 22.51 40.42 33.47 50.43 81.71 87.28 45.39 6.21 8.57 75.20 14.76 37.92 6 486763 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 434120 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 375590 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 476423 Transcript 0 1.96 1.65 0.73 2.00 1.55 1.28 2.75 3.72 2.46 1.87 0.00 2.79 2.79 0.83 1.59 4.44 2.87 0.16 0.00 1.70 1.28 0.12 1.70 10 475554 Transcript 0 0.02 1.34 0.00 0.03 0.00 0.41 0.90 1.11 2.14 0.72 3.23 1.57 0.00 3.67 1.71 0.81 0.16 0.86 0.00 1.41 0.88 0.01 0.66 11 472351 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 492354 Transcript 1 47.56 8.09 44.50 32.20 12.82 45.77 29.90 67.57 39.50 164.37 243.64 79.68 72.88 41.67 101.74 99.72 186.07 81.75 8.28 14.45 96.31 70.48 45.58 13 472461 Transcript 0 1.24 0.68 0.61 0.51 0.22 0.31 1.55 2.16 1.54 1.01 0.65 0.89 0.35 0.99 1.37 2.74 5.26 0.92 0.00 0.72 4.04 0.35 4.15 14 412548 Transcript 0 0.00 0.00 0.29 0.08 0.16 0.11 0.08 0.00 0.00 0.00 0.68 0.00 0.00 0.19 0.00 0.52 1.36 0.00 0.00 0.00 0.52 0.00 0.00 15 ER1a ExonRegion 0 0.45 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.47 1.24 0.00 0.00 0.75 0.44 1.27 2.18 0.00 0.00 0.46 0.00 0.00 0.00 16 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.76 0.51 0.11 2.93 0.00 0.63 0.84 0.00 2.66 1.13 0.00 0.00 0.91 0.86 1.21 18 E2a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3b ExonRegion 0 1.62 0.39 0.00 0.07 0.31 0.72 1.01 0.00 0.14 0.17 4.49 0.00 0.79 5.00 7.16 17.88 7.13 0.16 1.77 0.12 1.13 1.82 4.20 21 E3_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.84 2.08 0.00 0.00 0.00 2.63 0.00 0.00 2.47 4.57 7.95 0.00 0.00 0.00 0.00 3.09 0.00 0.00 22 E3_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.74 0.00 0.00 0.00 0.00 4.27 4.77 0.00 4.80 0.00 3.09 0.00 0.00 23 E3_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E3_Af KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E3_Ag KnownBoundary 1 7.41 13.22 0.00 0.00 8.57 8.29 8.66 0.00 1.79 0.00 113.45 6.75 0.00 37.79 24.72 226.09 75.36 2.03 9.04 3.26 25.88 11.94 100.13 26 ER3c ExonRegion 1 6.98 16.68 3.68 5.32 17.12 14.49 14.43 6.57 9.02 11.35 200.06 9.52 79.26 173.62 162.47 378.95 152.50 14.60 43.00 8.30 56.41 37.92 142.72 27 E3_Ah KnownBoundary 1 874.15 277.58 125.10 111.81 634.04 1030.54 951.84 216.42 146.58 357.02 4039.08 220.12 681.29 2859.10 3069.91 5565.55 3993.17 394.26 913.16 366.88 1979.16 1036.13 2735.55 28 ER3d ExonRegion 1 25.70 26.44 22.41 20.44 38.99 69.68 51.45 25.68 21.70 29.98 581.25 47.62 299.49 464.03 402.86 964.24 537.57 36.69 131.97 32.83 271.37 105.37 373.37 29 ER3e ExonRegion 1 91.01 50.84 35.54 39.52 85.62 148.54 160.20 50.13 29.64 47.02 1030.24 64.94 361.13 950.11 844.26 1575.23 973.76 70.21 216.60 70.21 495.83 195.85 607.89 30 ER3f ExonRegion 1 109.00 62.53 41.97 44.29 109.04 192.55 190.32 60.50 33.97 65.09 1212.89 75.77 389.27 1177.08 987.15 1805.57 1170.17 83.61 229.35 83.51 586.19 218.77 715.81 31 ER3g ExonRegion 1 406.49 169.24 91.70 80.18 322.87 609.94 540.54 153.35 105.88 263.85 2797.12 169.81 635.50 2205.92 2081.65 3653.73 2699.22 239.49 574.96 227.54 1353.93 722.40 1717.45 32 ER3h ExonRegion 1 533.56 202.20 132.49 106.24 368.68 776.09 659.55 214.41 166.83 410.13 3068.02 170.50 431.59 1581.00 1542.91 3739.01 3013.95 330.31 662.10 259.67 1540.34 989.87 1878.47 33 E3a_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 34 E3b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.09 0.00 2.74 4.42 0.00 6.82 2.47 4.45 0.00 3.93 2.57 0.00 0.00 3.09 0.00 0.00 35 E3b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E3b_E7a KnownJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 2.11 0.00 0.00 2.29 0.00 0.00 37 E3b_E8a KnownJunction 1 32.60 45.39 69.90 74.02 36.93 105.73 49.37 141.99 99.22 198.83 193.00 47.72 61.20 62.10 130.42 470.47 245.63 200.10 82.17 19.43 122.57 42.01 190.19 38 E3b_E10a KnownJunction 0 51.64 8.81 50.50 22.71 17.57 32.48 21.15 65.23 53.91 160.69 172.68 45.01 80.84 60.45 89.25 157.48 174.57 90.78 12.42 15.02 148.20 29.51 72.90 39 E3b_E10b KnownJunction 1 47.56 8.09 44.50 32.20 12.82 45.77 29.90 67.57 39.50 164.37 243.64 79.68 72.88 41.67 101.74 99.72 186.07 81.75 8.28 14.45 96.31 70.48 45.58 40 ER3i ExonRegion 1 190.49 65.07 126.21 94.04 115.06 324.58 225.07 209.14 156.86 356.69 1066.96 121.23 220.43 217.63 333.64 1176.96 1069.49 262.38 210.23 70.21 583.98 433.37 528.60 41 ER4a ExonRegion 0 2.48 1.36 1.22 1.02 0.45 0.61 3.10 4.31 3.08 2.01 1.29 1.79 0.71 1.98 2.74 5.48 10.52 1.84 0.00 1.44 8.09 0.70 8.30 42 E4a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 I4_AR3 ActiveIntronRegion 0 8.89 3.05 8.58 6.41 8.03 5.68 32.83 19.01 7.41 12.62 6.57 23.38 6.10 0.00 22.63 11.59 27.07 4.43 0.00 5.96 2.64 8.33 4.70 44 I4_AR6 ActiveIntronRegion 0 29.69 4.34 2.95 8.99 9.91 10.01 23.26 16.82 6.18 13.86 3.87 23.40 20.03 0.92 9.64 18.96 5.53 2.75 0.00 8.63 2.08 4.39 7.06 45 I4_AR7 ActiveIntronRegion 0 33.86 1.38 1.30 7.08 13.32 9.25 16.08 9.71 2.68 7.10 3.54 7.83 15.97 0.00 12.53 14.42 0.00 0.31 0.00 8.19 7.74 1.77 9.68 46 ER5a ExonRegion 0 0.15 1.46 1.07 0.10 0.11 4.34 4.83 0.51 1.48 0.69 6.10 2.62 13.54 2.52 5.07 3.52 8.69 4.03 0.49 0.09 1.61 3.23 0.62 47 E5a_E8a KnownJunction 0 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 6.82 2.47 6.06 3.85 4.77 1.99 0.00 0.00 3.15 0.00 0.00 48 ER6a ExonRegion 0 5.88 4.96 2.20 6.01 4.66 3.83 8.25 11.16 6.12 5.62 0.00 8.38 8.36 2.48 4.76 9.72 8.62 0.48 0.00 5.11 3.84 0.37 5.11 49 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER7a ExonRegion 0 0.05 0.66 0.00 0.09 0.00 1.24 2.70 0.79 3.30 2.16 2.38 4.72 0.00 3.65 5.12 2.43 0.47 0.48 0.00 4.23 0.34 0.03 1.98 51 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 1.68 0.00 7.32 0.00 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER8a ExonRegion 0 20.28 21.43 36.42 33.96 38.85 82.78 42.76 103.26 70.33 144.40 312.63 76.98 163.40 99.30 116.28 312.55 424.17 71.10 45.68 38.43 209.62 42.17 93.62 53 E8a_E10a KnownJunction 1 23.63 8.81 19.31 12.35 55.86 39.47 26.41 53.89 32.20 63.07 446.06 136.69 173.85 100.42 47.22 207.38 617.67 20.56 61.55 32.21 337.74 28.78 65.90 54 E8a_E10b KnownJunction 1 13.04 8.42 1.51 1.96 15.45 41.74 19.03 33.60 8.65 37.63 224.58 18.91 94.47 55.33 74.17 144.32 221.13 12.77 18.26 31.06 133.56 8.94 40.97 55 ER9a ExonRegion 0 0.00 0.00 0.29 0.08 0.16 0.11 0.08 0.00 0.00 0.00 0.68 0.00 0.00 0.19 0.00 0.52 1.36 0.00 0.00 0.00 0.52 0.00 0.00 56 ER10a ExonRegion 1 63.50 21.35 72.30 44.98 66.22 107.28 68.85 137.41 98.81 250.60 759.63 155.86 234.50 171.75 166.82 372.26 858.23 123.34 67.69 59.57 521.73 119.80 158.58 57 ER10b ExonRegion 0 46.02 25.78 105.12 70.95 71.66 78.19 43.11 178.59 125.10 323.90 1657.76 243.36 499.64 838.70 754.54 1358.62 1608.84 234.98 272.30 131.13 965.01 326.94 593.63 58 E10_Da KnownBoundary 1 58.75 40.72 133.02 84.57 241.17 101.25 74.28 155.10 135.39 306.07 1732.60 161.75 512.14 2015.02 1861.68 2832.33 1538.47 289.55 552.02 158.13 885.15 766.21 1512.29 59 E10_Db KnownBoundary 1 48.38 38.41 82.88 52.97 178.27 217.09 167.07 138.67 77.14 182.10 672.70 221.77 308.58 1648.37 1872.06 2164.39 568.96 166.06 236.24 125.28 475.50 787.16 1019.24 60 ER10c ExonRegion 1 44.73 36.06 125.80 79.50 189.00 160.82 113.60 158.10 114.87 293.00 1185.06 169.43 373.64 1955.44 1881.95 2562.77 1037.58 248.46 435.76 153.05 697.40 926.12 1327.56 61 ER10d ExonRegion 0 73.79 53.71 94.64 54.47 144.08 254.95 185.42 121.79 103.34 234.64 908.30 191.39 258.73 899.86 913.63 1041.59 698.53 175.63 113.82 111.58 531.39 343.85 466.17 62 E10c_E11a KnownJunction 0 184.77 151.16 135.77 65.99 451.61 788.98 530.48 133.90 155.58 283.37 1238.31 286.29 438.77 886.34 969.65 1069.89 928.10 251.00 131.67 127.13 809.78 321.29 411.71 63 ER11a ExonRegion 0 175.22 111.60 132.56 81.11 322.63 603.15 471.21 165.83 140.28 317.41 1170.93 320.91 367.81 1111.09 1289.30 1204.25 902.85 279.57 175.29 128.88 763.95 550.18 474.05 64 E11_Da KnownBoundary 0 232.41 84.79 140.24 95.59 241.17 409.65 510.04 193.21 144.50 327.15 1085.91 338.36 251.61 1273.77 1517.16 1265.65 847.59 275.13 200.29 131.73 689.93 756.85 517.90 65 E11a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER11b ExonRegion 1 223.98 93.19 156.63 109.73 125.81 272.01 303.89 287.23 171.41 446.01 1570.16 262.74 270.64 1589.89 1354.71 1240.60 1124.05 277.92 206.67 150.19 840.00 691.69 420.40 67 E11_Ab KnownBoundary 0 232.71 109.78 119.42 71.35 88.03 229.02 217.55 239.87 138.95 336.98 1454.53 223.27 284.40 1575.56 1233.33 883.02 956.99 162.29 129.98 122.21 788.84 498.26 261.64 68 E11_Db KnownBoundary 0 483.57 57.95 85.60 51.24 63.92 135.83 103.96 161.13 81.34 235.18 1368.03 279.99 297.71 1150.46 1128.50 686.57 992.89 60.36 101.18 131.35 782.29 435.62 242.00 69 ER11c ExonRegion 0 370.27 94.34 155.01 98.51 78.19 187.05 170.86 304.59 169.07 443.41 1878.89 300.18 338.72 1689.17 1390.51 977.83 1291.57 192.78 141.57 147.75 1038.68 574.24 307.21 70 ER11d ExonRegion 0 253.47 70.00 129.70 70.70 71.35 134.65 178.45 209.40 120.14 330.24 1329.37 263.05 335.69 1076.00 1170.17 620.99 1009.77 117.92 108.98 119.02 792.07 400.86 215.26 71 E11_Dc KnownBoundary 0 82.98 78.74 107.98 46.88 74.45 169.39 309.23 114.06 94.99 219.68 807.05 237.83 292.03 753.84 1037.40 392.46 718.47 63.22 90.26 106.68 541.73 239.42 174.82 72 ER11e ExonRegion 0 163.83 39.72 127.41 77.68 138.14 172.38 213.14 197.55 150.38 349.83 1049.54 316.05 371.83 945.37 990.14 804.15 806.07 185.22 107.04 125.78 701.08 415.68 326.46 73 E11_Dd KnownBoundary 1 221.82 16.90 58.19 49.71 113.16 91.03 87.62 121.25 106.86 227.98 688.28 113.14 114.12 428.81 584.46 660.08 611.50 168.92 75.20 89.80 411.19 259.45 357.42 74 E11_De KnownBoundary 0 105.94 35.98 95.95 83.44 68.93 66.16 62.89 205.37 89.26 190.13 579.36 146.00 180.35 590.74 405.96 715.45 380.36 181.15 136.38 41.99 371.53 350.19 250.54 75 ER11f ExonRegion 0 295.47 64.67 150.97 117.48 188.37 152.57 164.70 308.36 195.15 437.89 1527.76 397.44 486.83 1427.93 1361.27 1531.24 1005.45 354.77 211.51 151.49 955.09 709.23 640.19 76 ER11g ExonRegion 0 85.04 50.56 102.00 78.90 114.44 153.30 138.52 202.95 146.20 308.06 1253.79 397.20 537.27 1594.41 1226.56 1428.73 811.48 225.41 213.26 133.21 764.14 556.99 532.29 77 E11_Df KnownBoundary 0 86.98 39.53 44.26 19.98 82.43 72.00 166.67 112.13 98.32 219.60 1408.51 222.07 365.07 860.33 687.81 586.60 1046.19 81.12 103.63 81.94 712.17 264.83 224.42 78 E11_Dg KnownBoundary 1 52.45 24.86 19.54 32.23 73.17 121.86 140.83 44.81 71.53 163.80 1046.05 148.25 339.91 622.29 484.58 483.72 766.25 63.63 51.39 62.77 604.06 414.55 204.79 79 ER11h ExonRegion 0 71.30 36.86 46.18 40.03 82.78 124.47 182.62 112.46 124.52 275.90 1668.45 286.29 514.14 1019.54 729.67 688.23 1213.90 109.59 103.72 94.41 915.09 451.99 267.23 80 ER11i ExonRegion 0 167.93 105.74 130.80 101.31 153.71 242.74 211.71 169.65 97.59 246.45 577.25 237.51 257.24 626.37 542.35 567.25 407.21 111.46 102.48 75.53 419.48 403.25 327.46 81 ER11j ExonRegion 0 6.35 0.00 2.45 1.36 5.35 3.67 7.28 8.64 1.24 6.31 4.83 0.00 4.69 25.17 17.41 14.86 4.95 0.00 0.00 5.32 9.92 4.17 13.21 82 ER11k ExonRegion 0 0.00 0.00 2.45 0.00 0.00 0.00 1.32 5.19 0.00 1.15 1.93 0.00 0.00 6.50 11.61 5.94 0.00 0.00 0.00 2.13 2.20 0.00 2.94