Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PQLC2 Gene 0 8.22 3.89 15.57 13.12 14.70 11.98 13.09 28.89 22.93 25.39 11.16 6.76 11.11 26.14 30.29 17.69 17.80 16.27 11.89 8.54 26.11 27.68 41.53 2 430100 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 234646 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 375155 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 486522 Transcript 0 2.10 1.16 5.66 4.29 6.62 3.93 4.31 10.30 5.79 7.88 0.83 2.06 3.09 2.24 4.25 2.63 2.79 4.15 3.39 2.23 2.67 2.84 8.73 6 375153 Transcript 0 0.40 0.01 1.36 1.22 3.76 4.29 4.30 4.53 6.18 5.48 0.78 0.00 0.53 5.21 6.62 3.51 3.25 2.79 0.71 1.84 8.01 7.36 14.24 7 469076 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 400548 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 497827 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 432465 Transcript 0 7.28 2.93 9.52 18.25 15.42 19.82 15.17 22.74 25.76 22.63 11.64 6.07 5.68 25.70 21.17 20.58 12.08 18.67 15.54 9.66 19.61 32.17 32.17 11 ER1a ExonRegion 0 1.25 0.00 0.56 0.00 0.00 2.45 0.74 0.00 1.77 0.24 0.12 0.00 0.00 2.45 1.93 0.00 0.77 0.00 0.00 0.00 1.03 4.24 2.10 12 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 3.15 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.20 0.00 0.00 3.15 0.00 4.01 13 E1_Ac NovelBoundary 0 12.45 0.00 2.99 0.00 0.00 9.82 5.56 0.00 2.86 1.24 0.00 0.00 0.00 6.71 9.52 0.00 11.69 1.91 0.00 0.00 2.35 2.63 3.59 14 ER1b ExonRegion 0 12.70 0.00 2.45 0.00 0.00 12.84 3.97 0.00 4.94 2.29 3.87 0.00 0.00 17.87 14.51 0.00 9.90 0.00 0.00 0.00 4.41 8.33 8.81 15 E1_Da NovelBoundary 0 0.00 0.00 1.63 2.80 3.48 18.00 16.52 7.64 4.98 9.08 0.00 0.00 0.00 7.30 18.54 8.63 4.49 6.43 4.61 6.01 23.17 8.14 31.84 16 E1a_E1f KnownJunction 0 32.15 5.79 8.13 4.13 7.56 13.06 10.02 12.49 15.05 7.31 14.79 0.00 0.00 39.85 49.69 11.79 32.07 1.91 4.52 3.07 29.34 44.03 41.83 17 E1a_E2a NovelJunction 0 2.96 0.00 0.00 0.00 3.40 4.88 4.06 0.00 3.27 1.07 0.00 0.00 0.00 0.00 4.45 3.42 4.39 8.21 0.00 0.00 4.70 4.71 23.05 18 ER1c ExonRegion 0 12.70 0.00 2.45 0.00 0.00 12.84 3.97 0.86 4.94 2.29 3.87 0.00 0.00 17.87 17.41 2.97 9.90 0.00 0.00 0.00 4.41 9.38 10.28 19 ER1d ExonRegion 0 12.70 0.37 3.23 0.00 1.70 14.67 5.54 2.04 5.17 2.29 5.10 0.00 0.00 19.19 21.10 8.92 12.30 0.34 0.58 0.00 5.41 12.31 14.42 20 ER1e ExonRegion 0 19.17 2.75 4.18 0.00 3.78 24.06 13.16 4.07 6.97 4.52 9.78 0.00 0.00 30.48 53.42 8.92 28.93 3.59 3.19 0.00 31.24 34.81 35.76 21 ER1f ExonRegion 0 0.40 0.01 1.36 1.22 3.76 4.29 4.30 4.53 6.18 5.48 0.78 0.00 0.53 5.21 6.62 3.51 3.25 2.79 0.71 1.84 8.01 7.36 14.24 22 E1_Af KnownBoundary 0 0.00 0.00 1.63 1.90 11.38 5.00 4.50 5.09 10.88 10.72 0.00 0.00 0.00 9.48 0.00 8.20 8.32 2.57 0.00 5.69 3.15 17.08 19.38 23 ER1g ExonRegion 1 8.88 0.95 10.39 6.43 5.89 13.50 8.75 13.35 21.41 24.64 14.51 0.00 6.80 28.29 26.89 8.97 31.89 8.38 8.76 6.81 34.24 29.68 41.48 24 E1b_E2a KnownJunction 0 7.04 0.00 18.60 11.05 10.53 0.00 23.49 48.47 40.94 31.72 39.12 0.00 6.82 61.16 47.72 35.72 58.06 29.97 30.49 19.11 81.79 60.99 114.05 25 E1b_E3a KnownJunction 0 0.00 0.00 1.36 0.00 0.00 2.10 1.68 6.94 1.07 9.99 5.21 0.00 0.00 7.36 10.01 8.63 8.32 4.06 0.00 2.49 6.30 11.33 10.33 26 ER2a ExonRegion 0 9.55 5.10 27.19 16.97 19.18 15.23 16.45 43.45 39.35 49.08 22.24 8.41 7.56 69.66 66.01 39.66 37.63 27.00 32.88 15.12 67.34 87.49 116.02 27 E2a_E3a KnownJunction 1 13.19 2.57 43.94 28.10 15.96 21.69 12.19 68.02 49.07 59.98 26.22 22.81 25.32 108.48 122.50 91.60 28.99 59.57 23.15 17.39 86.61 139.80 181.74 28 ER3a ExonRegion 0 24.41 3.48 39.25 19.69 16.76 19.48 20.97 69.68 54.93 73.09 47.34 22.25 24.33 98.69 96.24 55.96 68.83 46.88 20.00 19.17 120.63 93.47 127.62 29 E3_Da NovelBoundary 0 2.82 0.00 3.46 2.03 0.00 0.00 4.46 4.64 1.10 0.00 0.00 0.00 0.00 2.41 0.00 16.49 0.00 2.49 0.00 0.00 2.90 0.00 4.27 30 E3a_E4a KnownJunction 0 10.82 0.00 28.03 16.71 10.70 14.71 16.34 44.40 41.06 37.93 12.90 6.15 26.30 45.85 59.46 38.28 52.17 20.40 11.20 15.34 54.24 73.73 76.49 31 E3a_E4b KnownJunction 0 3.56 0.00 7.75 4.89 4.33 12.66 0.00 11.17 6.42 14.69 4.84 0.00 0.00 7.42 8.90 4.02 0.00 8.95 8.66 3.26 12.29 19.53 10.84 32 ER3b ExonRegion 0 11.38 0.51 36.61 18.23 24.08 17.88 20.19 47.10 46.78 47.60 31.17 8.12 21.69 48.93 64.92 33.44 53.64 26.79 23.49 24.73 88.15 88.29 80.39 33 E4_Ab NovelBoundary 0 16.60 6.25 27.91 18.21 27.76 29.76 22.17 44.98 42.62 46.12 29.17 12.90 13.64 51.80 83.19 41.27 49.37 26.99 41.32 2.49 88.34 69.50 80.33 34 ER4a ExonRegion 0 12.50 3.37 27.11 16.23 19.32 15.87 18.16 42.83 39.95 40.86 22.83 11.09 19.35 50.60 76.07 34.46 55.60 24.19 23.09 7.45 67.35 64.98 71.03 35 ER4b ExonRegion 0 17.91 3.56 30.00 23.32 48.07 35.07 29.72 59.91 55.18 55.26 48.91 19.10 26.97 129.41 118.59 97.12 78.75 58.37 48.24 9.46 117.43 115.23 199.38 36 E4a_E5a KnownJunction 0 9.93 0.00 21.29 34.56 44.06 29.76 34.62 62.97 64.35 51.87 49.91 25.06 26.95 120.25 66.26 128.00 69.94 68.07 51.67 16.87 81.73 138.57 213.58 37 ER5a ExonRegion 0 9.40 3.74 26.44 18.85 13.02 27.26 18.60 49.30 43.28 46.32 26.45 13.93 27.52 82.97 71.07 46.64 49.56 28.74 21.32 14.25 63.78 70.13 95.08 38 E5a_E6a KnownJunction 0 14.00 5.39 28.71 20.78 20.54 30.72 36.52 54.83 40.86 42.17 24.74 0.00 26.13 78.29 33.99 55.54 48.15 22.68 33.13 6.07 68.70 58.29 115.33 39 ER6a ExonRegion 0 29.61 6.84 31.85 25.98 22.96 15.83 29.23 54.16 48.98 43.77 31.72 2.79 18.76 74.38 66.88 59.57 63.99 29.54 25.83 11.87 73.50 66.18 134.61 40 E6_Da NovelBoundary 0 0.00 0.00 1.24 0.00 4.16 0.00 14.88 3.20 0.00 1.10 0.00 0.00 0.00 9.36 4.45 0.00 7.67 6.84 0.00 0.00 18.90 3.12 3.84 41 E6a_E7a KnownJunction 0 38.30 3.03 21.64 15.62 13.92 21.12 17.27 32.61 45.08 38.06 33.64 6.30 34.58 70.34 70.71 38.45 73.12 22.84 8.94 2.56 66.35 59.21 146.48 42 E6a_E8a KnownJunction 0 7.56 0.00 6.27 19.24 8.06 10.79 8.17 16.51 16.67 14.42 15.42 0.00 0.00 14.36 0.00 8.29 0.00 15.88 9.51 8.95 8.53 0.00 18.95 43 E7_Aa NovelBoundary 0 0.00 0.00 4.17 2.06 0.00 0.00 5.92 6.65 10.65 7.17 2.32 5.70 0.00 15.66 0.00 8.54 17.11 14.09 9.32 2.68 13.34 8.88 8.28 44 ER7a ExonRegion 0 8.93 2.00 27.25 9.94 10.92 20.51 17.57 38.56 42.79 39.81 36.77 2.33 21.89 88.51 65.86 40.56 49.50 20.94 16.32 11.79 64.90 56.96 96.80 45 E7_Da NovelBoundary 0 0.00 0.00 3.19 0.00 0.00 2.67 1.99 0.00 5.56 2.12 0.00 6.15 0.00 7.00 4.45 6.75 9.35 2.24 0.00 12.02 8.03 8.88 15.96 46 E7a_E9a KnownJunction 0 17.04 11.84 35.66 10.16 8.23 19.42 28.26 47.52 37.93 51.55 33.06 0.00 0.00 72.58 104.70 43.83 35.72 19.44 3.67 6.52 38.05 57.62 86.56 47 E8_Aa NovelBoundary 0 10.30 0.00 0.00 0.00 3.74 12.49 1.85 0.00 0.00 2.82 4.79 0.00 6.01 4.71 0.00 4.10 0.00 3.73 0.00 0.00 0.00 12.43 28.34 48 ER8a ExonRegion 0 6.60 0.00 4.42 17.13 9.02 8.02 6.26 19.96 17.78 13.58 10.01 3.06 16.37 16.53 10.13 5.36 0.00 9.60 3.00 11.43 12.66 6.05 8.23 49 E8_Da KnownBoundary 0 5.85 0.00 6.45 16.81 11.71 10.62 6.23 24.32 19.91 14.59 2.53 5.55 13.64 9.36 15.82 4.36 0.00 9.95 0.00 9.01 11.37 16.66 3.50 50 ER8b ExonRegion 0 7.28 2.93 9.52 18.25 15.42 19.82 15.17 22.74 25.76 22.63 11.64 6.07 5.68 25.70 21.17 20.58 12.08 18.67 15.54 9.66 19.61 32.17 32.17 51 E8_Db NovelBoundary 0 7.48 12.56 10.41 28.70 35.31 21.58 27.43 30.60 26.62 19.88 11.63 0.00 0.00 27.08 18.91 37.00 16.92 28.60 8.85 6.26 26.44 21.37 31.50 52 I8 Intron 0 5.17 3.39 8.11 8.80 8.62 11.61 9.71 16.92 15.03 8.17 4.72 2.46 2.67 19.43 17.12 8.28 7.70 8.07 6.37 7.09 12.73 14.58 15.05 53 I8_SR1 SilentIntronRegion 0 5.18 3.40 8.13 8.82 8.64 11.64 9.73 16.96 15.06 8.18 4.74 2.47 2.67 19.47 17.16 8.29 7.72 8.09 6.38 7.11 12.76 14.62 15.08 54 E9_Aa NovelBoundary 0 3.11 9.87 3.46 3.76 4.07 2.50 4.50 10.76 10.07 11.90 10.21 5.55 0.00 20.31 25.09 12.99 0.00 14.05 9.13 0.00 0.00 19.17 14.77 55 ER9a ExonRegion 0 15.17 5.98 26.57 24.02 17.46 14.43 18.08 56.39 46.90 50.13 34.22 2.69 7.33 72.92 102.89 43.75 38.45 33.39 17.21 11.53 76.74 82.43 92.85 56 E9_Da KnownBoundary 0 2.74 3.09 27.17 32.36 18.85 4.43 25.22 50.64 50.58 57.27 23.90 0.00 12.99 62.10 82.45 30.59 25.99 15.17 20.89 18.09 57.14 36.99 58.30 57 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER9b ExonRegion 0 5.99 2.34 21.00 17.95 24.76 17.87 27.78 51.88 42.50 43.04 32.66 3.08 13.67 55.25 83.20 28.86 32.23 15.28 15.39 8.40 54.16 70.27 64.01 59 E9_Db KnownBoundary 0 62.97 31.24 26.88 29.50 72.75 59.23 75.56 76.44 51.91 48.78 37.54 5.70 13.64 40.67 59.58 39.99 69.47 23.42 40.19 23.97 65.67 91.67 109.52 60 ER9c ExonRegion 0 39.32 29.07 45.01 51.67 39.16 28.24 48.94 84.83 76.94 68.86 35.64 48.91 74.37 67.81 96.91 55.21 49.30 65.88 37.39 44.86 74.96 74.54 88.45 61 E9_Dc NovelBoundary 0 16.97 0.00 0.00 6.26 4.07 13.06 12.50 14.38 12.53 6.45 2.53 0.00 0.00 4.59 11.00 11.28 0.00 4.48 0.00 3.13 6.18 55.60 48.40 62 ER9d ExonRegion 0 13.76 2.03 4.90 7.84 5.35 9.63 13.57 8.64 11.12 11.18 5.32 0.00 0.00 17.46 29.74 16.35 4.13 4.62 0.00 2.13 3.86 39.59 41.85 63 ER9e ExonRegion 0 5.22 0.14 1.63 4.63 3.75 6.72 3.53 5.42 7.74 7.26 1.80 0.00 0.00 12.24 20.12 9.71 0.22 2.83 0.00 1.99 2.06 26.81 24.86 64 ER9f ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 I9 Intron 0 1.34 0.74 4.39 2.67 7.28 4.90 5.58 11.21 7.18 9.07 1.05 0.98 1.06 3.06 4.87 4.04 5.39 5.21 6.21 1.93 4.89 6.23 14.51 66 I9_SR1 SilentIntronRegion 0 1.53 0.88 3.70 2.65 9.02 4.24 7.29 9.10 6.93 9.02 1.12 1.60 2.84 3.77 5.66 4.07 4.78 5.41 3.52 1.89 3.97 5.36 11.51 67 I9_AR1 ActiveIntronRegion 0 1.06 0.51 5.89 3.63 6.52 5.98 5.57 9.52 8.13 8.72 0.97 1.33 0.00 2.26 5.57 4.47 7.17 7.15 6.66 1.57 5.69 5.97 18.89 68 I9_SR2 SilentIntronRegion 0 1.47 0.85 3.38 1.63 6.47 4.37 3.97 15.14 6.37 9.52 1.08 0.00 0.54 3.26 3.35 3.56 4.00 2.87 8.31 2.37 4.91 7.38 12.57 69 E10_Aa NovelBoundary 0 1928.71 1540.91 2108.50 2157.90 1463.58 1224.86 1860.40 1943.30 2169.10 1720.72 694.54 415.19 364.59 341.16 674.58 2377.84 1214.87 3455.93 1813.79 1871.30 1707.90 1310.34 3032.35 70 ER10a ExonRegion 0 4.21 2.32 11.32 8.58 13.23 7.86 8.62 20.60 11.58 15.75 1.66 4.11 6.18 4.47 8.51 5.25 5.58 8.30 6.78 4.46 5.34 5.67 17.46 71 IG9 Intergenic 0 4.65 0.39 1.75 1.55 1.88 1.11 2.78 1.89 1.99 2.34 0.68 0.82 2.52 0.34 5.31 5.30 4.00 1.23 1.62 1.15 3.51 1.00 10.95 72 IG9_SR1 SilentIntergenicRegion 0 4.66 0.39 1.75 1.56 1.88 1.11 2.79 1.89 2.00 2.35 0.68 0.82 2.53 0.34 5.32 5.31 4.00 1.23 1.63 1.15 3.52 1.00 10.97