Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NIPAL3 Gene 0 36.11 26.60 15.53 21.83 33.71 25.32 17.86 25.31 47.81 25.76 8.83 20.79 12.83 8.29 8.56 36.85 22.70 11.59 5.13 17.46 24.69 7.83 9.32 2 374399 Transcript 0 0.00 0.00 0.00 0.27 1.61 2.57 0.26 0.00 1.36 0.11 0.00 0.00 0.00 1.62 0.00 0.89 3.30 0.00 0.00 1.28 0.44 0.00 0.00 3 3912 Transcript 0 19.29 14.05 7.82 11.00 17.98 12.28 8.41 11.91 22.37 11.06 3.28 9.41 5.74 3.52 3.46 15.49 8.78 5.16 1.97 7.69 9.95 3.59 4.56 4 488155 Transcript 0 12.37 5.20 1.88 2.75 7.11 2.06 4.98 1.88 3.54 1.78 1.49 8.23 11.88 5.79 11.87 10.35 11.65 3.64 1.67 6.81 2.30 1.74 5.22 5 358028 Transcript 0 10.53 2.62 1.67 1.42 3.78 2.57 3.71 3.43 1.68 1.83 0.27 2.22 2.18 0.89 1.64 3.75 0.69 0.58 2.23 0.75 0.46 0.29 0.07 6 339255 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 475663 Transcript 0 11.27 1.57 1.10 1.57 3.45 0.63 3.18 1.99 2.68 1.61 2.66 4.61 2.20 2.56 1.16 9.70 3.12 0.79 0.55 2.01 1.32 0.00 0.50 8 428131 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 389489 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 389490 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 432012 Transcript 0 1.32 4.32 0.00 0.00 1.00 0.92 0.00 0.65 0.00 0.00 0.00 3.79 5.86 0.00 1.45 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 437117 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 ER1a ExonRegion 0 0.00 0.00 0.00 0.27 1.61 2.57 0.26 0.00 1.36 0.11 0.00 0.00 0.00 1.62 0.00 0.89 3.30 0.00 0.00 1.28 0.44 0.00 0.00 14 ER1b ExonRegion 0 2.12 3.39 0.00 3.48 2.68 10.60 4.85 0.00 4.94 1.27 1.93 0.00 9.90 8.12 1.61 6.93 8.07 1.64 0.00 2.36 5.88 1.16 1.31 15 ER1c ExonRegion 0 6.35 16.27 0.00 10.90 5.35 34.84 30.45 0.00 14.82 11.47 13.53 0.00 18.76 30.86 11.61 41.61 52.81 12.93 6.37 8.51 35.26 6.25 5.87 16 ER1d ExonRegion 0 21.17 36.60 1.23 10.90 5.35 53.18 34.42 3.46 27.17 14.91 19.33 0.00 23.45 35.73 17.41 68.36 62.72 14.78 6.37 17.02 52.89 14.58 14.68 17 ER1e ExonRegion 1 59.70 56.57 1.23 16.51 27.12 76.98 49.71 9.23 47.83 23.33 31.54 0.00 23.88 37.06 14.97 118.89 82.52 21.84 10.71 39.36 85.84 38.50 21.49 18 E1_Af KnownBoundary 0 98.83 71.50 2.93 31.46 50.42 84.72 43.59 17.37 89.84 36.21 30.64 0.00 6.66 7.36 5.19 133.13 78.17 28.11 15.34 50.30 95.57 45.50 20.40 19 ER1f ExonRegion 0 29.63 26.39 0.83 13.90 14.54 15.51 11.69 9.39 43.77 19.45 10.38 3.11 0.92 1.84 3.72 38.83 20.45 22.61 12.60 13.92 39.52 12.00 4.79 20 E1a_E2a KnownJunction 0 10.00 12.56 0.00 5.56 15.20 0.00 4.24 6.57 17.97 4.30 4.16 6.00 0.00 0.00 8.90 37.77 8.23 13.85 24.00 3.26 20.14 3.12 0.00 21 ER2a ExonRegion 0 5.45 8.67 8.87 12.11 21.94 24.48 12.24 19.89 48.78 23.03 19.68 11.33 12.25 14.99 11.86 59.36 43.23 20.35 7.44 25.64 48.54 12.99 10.54 22 E2_Da KnownBoundary 0 7.04 27.30 4.20 8.29 18.34 28.68 30.96 15.32 25.06 19.69 7.32 0.00 0.00 7.18 0.00 35.12 30.11 9.00 0.00 20.71 18.53 0.00 11.35 23 E2a_E2b NovelJunction 0 0.00 0.00 5.29 4.13 0.00 0.00 0.00 17.46 19.42 9.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 0.00 0.00 0.00 0.00 24 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E2_Ab KnownBoundary 1 9.93 31.18 10.32 4.63 4.33 13.69 4.20 12.86 22.77 12.17 4.95 0.00 0.00 7.95 0.00 7.69 46.56 9.00 4.52 15.28 15.57 0.00 3.33 26 ER2b ExonRegion 0 12.43 45.76 11.03 13.29 20.07 32.55 25.98 28.95 50.49 27.81 9.91 8.66 15.24 13.20 7.98 40.50 66.43 21.25 0.00 29.52 32.50 0.78 16.15 27 ER2c ExonRegion 0 29.22 37.25 9.92 8.71 22.39 11.88 8.59 23.97 48.91 23.59 26.07 15.67 21.36 13.22 12.93 42.39 53.93 20.33 4.47 22.80 41.92 3.58 7.18 28 E2_Db KnownBoundary 0 5.93 3.35 1.30 3.93 4.33 2.61 0.00 0.00 4.17 0.00 2.63 0.00 0.00 2.12 8.90 4.10 0.00 2.53 0.00 5.75 0.00 0.00 0.00 29 E2b_E3a NovelJunction 0 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 2.47 0.00 3.25 12.62 2.36 0.00 9.01 0.00 0.00 0.00 30 E2b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 31 E2b_E5a KnownJunction 0 25.34 24.80 12.24 6.76 8.49 2.73 6.32 21.65 55.67 30.11 33.53 21.16 14.61 14.36 4.45 44.18 37.59 18.61 4.80 11.95 65.48 8.76 12.38 32 ER2d ExonRegion 0 12.37 5.20 1.88 2.75 7.11 2.06 4.98 1.88 3.54 1.78 1.49 8.23 11.88 5.79 11.87 10.35 11.65 3.64 1.67 6.81 2.30 1.74 5.22 33 E2_Dc NovelBoundary 0 34.67 8.68 0.00 6.59 23.34 2.90 4.24 5.46 9.09 0.00 2.68 12.60 19.32 4.47 6.30 11.71 4.39 0.00 0.00 10.23 6.05 0.00 0.00 34 E3_Aa NovelBoundary 0 20.45 9.47 1.51 7.23 6.96 9.54 5.96 15.61 7.93 7.79 0.00 12.45 0.00 2.30 5.32 7.43 12.25 0.00 0.00 6.14 5.81 0.00 0.00 35 ER3a ExonRegion 0 22.53 3.14 2.19 3.14 6.89 1.26 6.37 3.98 5.37 3.23 5.32 9.23 4.41 5.12 2.32 19.39 6.24 1.58 1.09 4.02 2.65 0.00 1.01 36 E3_Da NovelBoundary 0 25.56 3.35 3.81 1.30 15.70 0.00 4.15 6.57 3.15 4.14 9.69 32.26 20.94 0.00 0.00 15.21 4.49 2.36 4.24 14.19 2.59 0.00 7.94 37 E4_Aa NovelBoundary 0 16.45 0.00 1.80 2.06 12.48 0.00 6.36 3.94 2.78 2.79 2.68 6.30 6.82 0.00 0.00 24.10 13.56 0.00 0.00 6.39 2.35 0.00 0.00 38 ER4a ExonRegion 0 11.78 3.77 0.00 0.94 6.18 0.85 3.02 0.03 2.20 0.00 0.90 4.96 3.58 2.14 0.00 6.43 4.59 0.37 0.00 2.98 2.04 1.93 2.75 39 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER5a ExonRegion 0 16.66 11.49 15.63 7.21 10.70 9.89 4.09 18.44 50.73 33.41 19.78 11.92 19.24 15.13 6.31 49.19 52.05 15.08 5.12 19.73 41.81 12.26 14.22 41 E5a_E6a KnownJunction 0 11.85 8.95 16.29 14.75 16.89 8.46 0.00 19.67 54.34 37.77 14.58 6.15 19.32 14.95 9.02 43.24 49.84 11.40 4.33 23.46 39.72 6.00 12.04 42 ER6a ExonRegion 0 23.16 12.06 8.94 15.20 8.88 15.04 10.64 21.53 54.07 38.19 21.51 14.01 10.70 18.48 9.73 54.41 39.80 16.37 12.07 36.70 65.93 5.54 17.76 43 E6_Ab KnownBoundary 0 35.27 6.25 14.69 26.70 20.63 21.46 13.43 25.22 52.37 35.14 33.75 18.91 6.33 20.60 10.38 89.12 31.23 23.05 12.71 25.69 51.83 3.00 21.60 44 ER6b ExonRegion 0 18.39 8.09 19.54 11.78 23.50 31.62 8.40 18.66 48.99 38.56 18.57 22.59 12.94 15.33 6.10 60.26 37.79 22.43 10.18 26.19 55.73 13.10 14.04 45 E6a_E7a KnownJunction 0 25.78 24.40 26.34 5.53 26.91 34.18 21.90 21.40 49.83 35.67 14.21 6.30 0.00 17.07 8.90 35.89 29.17 14.80 8.38 28.00 83.52 12.25 11.35 46 E6a_E10a NovelJunction 0 0.00 2.83 1.15 0.00 3.74 2.44 1.94 0.00 0.00 1.05 2.26 0.00 6.01 0.00 0.00 3.67 4.02 0.00 4.14 0.00 0.00 2.63 11.10 47 ER7a ExonRegion 0 20.42 21.52 22.30 10.52 33.63 28.52 30.14 21.92 63.07 34.89 14.88 27.20 7.58 19.41 13.68 63.90 43.19 13.40 3.72 40.71 77.42 13.13 15.42 48 E7a_E8a KnownJunction 0 23.04 24.27 19.19 22.11 59.76 30.83 24.69 21.65 79.43 46.04 28.95 43.21 13.15 22.25 21.01 62.89 49.93 19.32 3.67 36.11 62.64 12.06 15.88 49 ER8a ExonRegion 0 24.54 16.70 16.01 15.82 21.85 17.75 17.76 24.64 62.76 44.32 15.62 27.64 17.86 16.80 7.39 67.04 47.66 16.16 9.43 28.45 53.57 16.75 14.02 50 E8a_E9a KnownJunction 0 30.30 24.07 25.55 22.54 36.33 11.41 17.00 33.19 95.14 57.91 24.85 24.76 12.66 35.61 4.45 72.97 95.93 30.26 12.89 35.47 64.06 18.74 23.39 51 ER9a ExonRegion 0 27.89 9.37 23.04 17.20 16.14 36.30 18.26 25.96 67.22 53.30 21.80 39.50 25.77 23.63 10.53 78.62 66.80 21.24 4.50 31.43 63.29 15.55 17.26 52 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.93 0.00 0.00 0.00 0.00 0.00 0.00 53 E9a_E11a KnownJunction 0 35.27 17.43 13.19 34.83 7.72 61.84 30.16 29.74 56.60 71.08 21.74 31.36 40.09 12.48 0.00 60.24 69.00 22.63 0.00 36.50 76.60 13.29 6.66 54 E10_Aa NovelBoundary 0 1562.65 2221.51 1790.36 1748.03 1485.82 1593.29 2562.28 1747.82 1470.27 1455.51 487.65 598.70 771.05 377.95 515.24 1432.87 1067.13 1410.20 1448.51 1763.92 848.39 732.66 1382.97 55 ER10a ExonRegion 0 10.05 3.88 0.00 0.00 2.68 0.00 3.04 0.00 2.16 1.46 0.00 3.94 5.22 14.14 23.67 0.00 0.83 0.00 0.00 0.00 0.00 0.00 5.67 56 E10_Da KnownBoundary 0 150.84 81.89 464.27 512.59 53.31 55.25 101.62 547.31 461.97 481.23 30.06 28.21 20.45 19.37 18.05 85.70 99.11 591.66 76.05 87.37 44.85 29.70 58.39 57 ER10b ExonRegion 0 10.53 2.62 1.67 1.42 3.78 2.57 3.71 3.43 1.68 1.83 0.27 2.22 2.18 0.89 1.64 3.75 0.69 0.58 2.23 0.75 0.46 0.29 0.07 58 E11_Ac NovelBoundary 0 9.11 17.69 11.47 18.11 36.33 6.70 19.65 23.08 54.77 30.60 8.74 0.00 0.00 0.00 0.00 14.78 17.20 9.20 0.00 19.05 27.06 10.16 7.68 59 ER11a ExonRegion 0 21.38 19.21 12.68 30.50 25.28 33.58 22.64 31.05 62.78 60.11 18.13 40.16 17.63 9.86 5.00 56.57 54.29 16.37 3.41 38.88 61.32 9.77 5.37 60 ER11b ExonRegion 0 25.40 26.44 15.93 34.07 48.16 23.84 26.48 27.66 66.70 59.64 21.26 38.97 14.07 9.74 8.70 47.55 46.21 14.78 6.37 42.55 55.09 10.42 17.62 61 ER11c ExonRegion 0 28.91 23.35 19.47 22.54 36.00 25.41 27.09 31.03 74.63 48.06 22.48 59.22 22.30 13.42 12.37 83.81 60.60 20.74 9.86 38.28 54.51 10.71 18.17 62 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 63 E11a_E13a KnownJunction 0 24.15 27.36 11.21 16.91 41.51 18.00 36.04 22.30 80.58 48.70 27.69 56.57 13.64 13.95 8.90 115.44 46.47 20.60 0.00 30.49 55.60 13.59 26.72 64 ER12a ExonRegion 0 2.16 0.00 0.89 0.00 1.42 0.00 0.00 3.41 2.82 0.86 0.00 1.82 5.63 0.83 0.00 3.03 5.94 0.00 0.00 0.00 0.00 1.06 0.00 65 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER13a ExonRegion 0 37.43 26.28 11.54 24.32 39.53 33.32 23.77 37.00 79.73 49.02 21.98 36.24 18.02 13.80 14.73 98.75 41.24 17.34 10.24 33.90 52.79 15.52 25.41 67 E13a_E14a KnownJunction 0 50.97 26.64 7.81 24.14 38.62 38.67 20.71 35.53 96.03 45.32 34.96 38.11 6.82 9.71 10.75 94.93 48.99 16.66 7.34 45.13 53.13 10.84 20.06 68 ER14a ExonRegion 0 46.83 28.15 13.79 17.72 27.47 23.64 23.96 32.38 94.89 47.67 20.90 33.62 20.52 13.73 20.08 109.09 51.01 30.55 11.05 44.51 43.59 20.77 21.29 69 E14_Da NovelBoundary 0 52.31 0.00 0.00 7.26 4.33 0.00 2.25 7.19 9.00 1.67 0.00 0.00 6.82 4.89 4.45 12.56 4.21 3.69 0.00 0.00 3.15 0.00 0.00 70 E14a_E15a KnownJunction 0 32.01 24.73 27.67 14.42 27.84 21.75 42.00 45.18 85.88 48.81 18.22 46.67 13.64 9.65 0.00 113.30 54.51 38.39 11.20 49.09 21.25 49.05 36.62 71 I14 Intron 0 14.23 5.25 2.36 3.59 8.36 1.37 4.86 4.90 4.50 2.09 1.71 6.28 2.94 1.20 0.86 10.50 4.71 0.37 0.87 2.75 2.24 0.14 0.00 72 I14_SR1 SilentIntronRegion 0 14.31 5.28 2.37 3.61 8.40 1.38 4.88 4.92 4.52 2.10 1.72 6.31 2.96 1.21 0.86 10.55 4.73 0.38 0.87 2.76 2.25 0.14 0.00 73 E15_Aa NovelBoundary 0 20.74 3.35 4.88 4.43 20.54 0.00 2.21 11.25 6.19 2.98 2.68 6.30 6.82 2.47 6.18 11.71 3.55 0.00 4.14 3.26 2.90 0.00 0.00 74 ER15a ExonRegion 0 35.54 21.19 15.79 26.15 33.80 38.80 31.15 41.96 76.33 54.76 26.45 59.88 28.78 15.44 7.85 129.52 51.91 31.86 12.47 32.32 43.05 26.32 27.79 75 E15_Da KnownBoundary 0 13.85 14.93 1.42 6.93 3.31 0.00 7.11 6.33 9.49 4.41 2.05 7.35 0.00 0.00 0.00 7.69 0.00 0.00 0.00 2.49 0.00 0.00 4.35 76 E15a_E15b KnownJunction 0 13.93 0.00 1.36 3.50 0.00 0.00 0.00 0.00 2.95 0.00 2.63 6.30 6.82 0.00 4.94 23.93 4.58 0.00 0.00 0.00 0.00 0.00 4.10 77 E15a_E16a KnownJunction 0 16.82 13.55 12.00 21.94 43.55 37.31 16.52 34.83 48.87 55.60 16.37 37.21 6.82 12.18 12.61 90.57 32.07 36.69 9.04 17.45 47.38 12.49 30.30 78 ER15b ExonRegion 0 12.21 6.35 2.57 4.93 7.60 3.50 6.19 4.99 8.84 2.77 0.89 7.28 3.39 0.81 0.49 5.45 3.75 1.35 0.17 2.62 0.93 0.28 0.53 79 E15_Ab KnownBoundary 0 21.34 2.63 5.44 5.13 3.99 5.11 8.44 9.41 16.09 1.34 2.32 32.41 0.00 0.00 0.00 0.00 3.65 0.00 0.00 3.26 5.37 0.00 0.00 80 ER15c ExonRegion 0 34.84 9.71 10.42 10.65 13.82 3.95 9.88 12.99 16.61 6.23 7.32 16.30 4.41 3.76 12.80 23.50 15.96 0.00 1.12 3.65 5.13 2.92 4.08 81 E15_Db KnownBoundary 0 44.30 5.39 7.30 14.18 27.25 19.70 2.08 17.33 15.31 5.24 7.11 19.51 6.82 2.12 0.00 19.99 13.46 0.00 4.80 5.69 3.15 5.39 3.67 82 ER15d ExonRegion 0 37.10 15.02 1.95 6.92 13.52 4.73 8.06 9.88 14.28 4.57 4.05 9.44 8.28 2.57 4.31 13.39 11.62 0.00 2.51 2.76 2.33 0.80 3.32 83 E15_Dc KnownBoundary 0 76.68 17.30 1.39 6.59 28.95 7.55 19.17 6.86 2.95 4.62 4.53 12.60 12.50 2.30 4.45 10.42 16.27 0.00 0.00 0.00 0.00 0.00 8.45 84 ER15e ExonRegion 0 24.16 11.22 1.23 3.13 22.12 4.16 6.95 3.57 1.36 1.41 3.61 5.05 21.96 1.84 7.69 5.40 8.64 0.00 0.00 1.81 0.00 0.00 2.79 85 E15_Dd NovelBoundary 0 10.08 8.35 3.37 5.29 31.49 5.79 0.00 9.82 10.94 7.87 0.00 5.70 0.00 0.00 0.00 15.30 8.70 2.45 3.76 5.88 0.00 6.18 4.35 86 E15_De NovelBoundary 0 27.86 12.10 0.00 5.43 15.37 0.00 4.20 6.94 11.23 1.53 2.68 12.60 6.82 2.41 0.00 8.72 4.58 0.00 0.00 2.43 0.00 0.00 0.00 87 ER15f ExonRegion 0 1.32 4.32 0.00 0.00 1.00 0.92 0.00 0.65 0.00 0.00 0.00 3.79 5.86 0.00 1.45 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 88 E16_Aa NovelBoundary 0 3.48 6.58 5.38 8.56 11.80 0.00 0.00 9.53 19.47 5.64 0.00 5.55 0.00 0.00 0.00 19.74 11.97 0.00 0.00 2.43 0.00 0.00 0.00 89 ER16a ExonRegion 0 27.37 23.49 11.26 30.37 39.29 37.77 24.50 40.65 82.33 57.71 14.55 42.82 21.34 10.86 8.92 94.69 39.02 31.19 14.56 31.14 52.38 22.07 14.11 90 E16_Da KnownBoundary 0 62.31 58.21 18.33 35.59 73.77 49.46 38.51 40.05 68.52 52.49 12.79 37.51 12.66 9.30 10.63 104.67 30.95 26.49 12.42 36.56 61.72 18.00 23.99 91 ER16b ExonRegion 0 20.00 35.00 10.22 33.21 48.12 46.48 27.98 27.83 79.01 48.58 8.70 31.37 13.30 11.81 9.49 66.09 46.97 24.16 8.77 24.07 39.96 12.93 8.18 92 E16_Db KnownBoundary 0 27.63 49.93 4.46 43.95 56.71 68.03 26.50 27.85 88.05 40.67 12.58 57.32 20.45 7.42 8.90 63.23 39.93 21.60 22.59 27.93 47.88 12.49 21.08 93 ER16c ExonRegion 0 65.39 52.41 31.30 43.06 65.76 48.28 30.62 47.61 85.50 44.25 12.23 32.67 19.37 11.94 13.85 51.78 30.51 18.15 7.89 27.78 37.75 12.43 15.47