Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-62I21.1 Gene 0 2.53 4.23 4.37 41.83 7.92 2.77 31.93 5.68 6.84 24.00 0.24 0.00 0.49 0.00 0.00 0.00 0.00 28.59 4.81 13.40 6.24 1.18 10.17 2 446321 Transcript 0 0.94 1.56 2.00 15.67 3.75 1.30 12.99 2.38 3.07 10.39 0.12 0.00 0.24 0.00 0.00 0.00 0.00 12.73 2.09 5.63 2.99 0.49 3.91 3 ER1a ExonRegion 0 0.00 3.66 6.48 20.96 3.56 0.81 9.47 2.31 3.27 15.85 0.03 0.00 0.00 0.00 0.00 0.00 0.00 25.63 4.24 6.60 1.05 0.94 1.30 4 E1_Da NovelBoundary 0 3.78 3.09 6.30 59.07 12.48 0.00 8.13 11.58 11.11 41.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64.29 0.00 2.49 6.05 0.00 12.12 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 Ix Intron 0 3.96 8.24 12.31 85.48 18.54 5.85 32.66 11.63 15.69 45.57 0.11 0.10 0.11 0.04 0.06 0.00 0.00 57.05 8.79 18.56 7.28 1.74 7.68 7 Ix_SR3 SilentIntronRegion 0 4.82 10.71 12.93 86.59 22.95 7.31 44.10 11.64 15.66 45.13 0.00 0.13 0.00 0.00 0.00 0.00 0.00 32.11 6.35 17.11 3.84 2.00 6.69 8 Ix_AR4 ActiveIntronRegion 0 8.23 10.70 15.45 122.16 18.97 5.87 27.71 12.96 18.94 48.28 0.44 0.41 0.00 0.31 0.00 0.00 0.00 53.28 10.20 19.71 6.29 1.67 3.69 9 Ix_AR2 ActiveIntronRegion 0 2.75 7.60 10.97 82.47 26.08 7.74 36.56 12.97 20.03 58.02 0.31 0.00 0.00 0.00 0.00 0.00 0.00 88.49 17.07 24.54 10.73 2.71 15.74 10 Ix_SR1 SilentIntronRegion 0 2.03 6.51 13.05 90.80 14.27 4.30 25.64 13.60 16.69 51.15 0.00 0.00 0.00 0.00 0.22 0.00 0.00 87.28 9.69 21.45 12.69 1.44 9.71 11 Ix_AR1 ActiveIntronRegion 0 2.05 1.64 7.37 38.02 7.34 3.26 12.39 5.40 8.02 26.48 0.31 0.00 1.25 0.00 0.00 0.00 0.00 67.44 8.23 12.36 6.39 1.01 5.21 12 E2_Aa NovelBoundary 0 0.00 8.88 11.92 50.04 0.00 0.00 4.33 1.97 5.30 24.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64.00 13.55 15.40 6.30 0.00 12.04 13 ER2a ExonRegion 0 0.86 0.77 3.70 31.92 10.83 2.20 23.55 5.19 7.51 26.41 0.75 0.00 1.56 0.00 0.00 0.00 0.00 34.64 2.58 7.80 15.09 1.67 7.13 14 E2_Da NovelBoundary 0 3.04 9.08 10.05 80.98 15.53 2.90 27.78 4.03 16.87 35.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.33 4.80 35.15 5.56 3.12 6.91 15 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 Ix Intron 0 1.69 4.56 5.34 42.77 8.42 3.51 26.32 6.10 8.25 23.04 0.00 0.00 0.00 0.00 0.00 0.13 0.00 37.08 4.60 14.15 5.52 1.42 7.11 17 Ix_SR1 SilentIntronRegion 0 1.69 4.56 5.34 42.78 8.42 3.51 26.33 6.10 8.25 23.05 0.00 0.00 0.00 0.00 0.00 0.13 0.00 37.09 4.60 14.16 5.53 1.42 7.12 18 E3_Aa NovelBoundary 0 0.00 10.00 4.64 58.27 14.94 0.00 26.41 9.36 14.32 38.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.12 4.80 20.33 2.66 0.00 11.35 19 ER3a ExonRegion 0 3.90 2.50 2.24 17.37 11.51 6.20 30.51 6.32 8.96 19.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.91 5.83 13.05 4.06 0.00 7.22 20 E3_Da NovelBoundary 0 0.00 6.71 6.45 69.29 20.37 0.00 47.52 11.62 10.36 59.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.60 14.21 11.89 5.99 0.00 11.44 21 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 Ix Intron 0 2.07 2.65 4.68 34.55 6.24 3.08 30.49 4.44 7.81 22.15 0.09 0.00 0.00 0.00 0.00 0.00 0.00 41.45 5.05 15.47 7.60 0.49 5.89 23 Ix_SR1 SilentIntronRegion 0 2.07 2.66 4.69 34.59 6.24 3.08 30.52 4.45 7.82 22.17 0.09 0.00 0.00 0.00 0.00 0.00 0.00 41.49 5.05 15.49 7.61 0.49 5.89 24 E4_Aa NovelBoundary 0 67.86 146.09 78.15 167.94 160.70 130.10 225.76 83.34 80.87 88.27 32.38 7.35 6.33 19.54 34.74 80.83 64.42 153.54 112.85 114.86 27.31 25.96 136.92 25 ER4a ExonRegion 0 0.00 0.00 0.00 0.69 0.05 0.14 6.49 0.07 0.16 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.72 0.12 4.01 0.00 0.00 2.83 26 E4_Da NovelBoundary 0 0.00 3.35 15.11 60.20 4.33 2.90 53.83 1.77 14.61 45.53 0.00 0.00 0.00 0.00 0.00 3.59 0.00 45.14 4.80 18.92 9.39 0.00 11.95 27 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 Ix Intron 0 2.24 5.39 6.88 43.40 6.96 3.09 26.00 7.44 10.17 29.67 0.07 0.00 0.00 0.00 0.00 0.03 0.00 57.44 5.46 20.27 6.69 0.94 9.34 29 Ix_AR3 ActiveIntronRegion 0 4.16 5.02 8.13 53.58 12.88 3.33 40.40 6.03 12.46 33.68 0.26 0.00 0.00 0.00 0.00 0.41 0.00 47.06 5.49 26.21 5.85 0.29 10.85 30 Ix_AR2 ActiveIntronRegion 0 7.42 2.41 5.83 66.42 7.41 3.44 27.17 6.01 12.86 37.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.54 7.79 28.81 10.44 1.70 17.21 31 Ix_SR2 SilentIntronRegion 0 1.97 5.41 6.58 42.89 6.29 3.09 23.64 7.68 10.08 29.47 0.06 0.00 0.00 0.00 0.00 0.00 0.00 58.77 5.27 20.64 6.73 0.98 9.08 32 Ix_AR1 ActiveIntronRegion 0 2.73 6.55 9.78 47.19 9.54 3.67 35.32 8.11 12.96 32.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63.48 8.37 18.71 8.21 1.44 10.37 33 Ix_SR1 SilentIntronRegion 0 1.99 4.05 4.80 25.92 5.13 1.65 27.73 4.42 2.55 19.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.48 2.25 7.68 3.18 0.00 7.71 34 E5_Aa NovelBoundary 0 3.70 5.85 3.28 62.23 19.44 0.00 87.75 10.60 5.82 41.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.44 9.13 29.40 2.35 6.12 16.73 35 ER5a ExonRegion 0 3.70 7.11 5.59 70.08 7.79 2.39 46.85 7.51 7.78 31.60 0.28 0.00 0.56 0.00 0.00 0.00 0.00 40.67 6.03 19.23 6.74 1.82 16.69