Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-488L18.5 Gene 0 243.44 36.74 80.34 89.91 246.01 141.15 133.35 101.09 77.37 130.74 211.96 555.08 429.80 390.75 203.78 588.11 262.35 57.63 45.68 107.91 34.98 123.45 160.71 2 421406 Transcript 0 134.57 19.30 48.97 53.69 97.09 76.04 58.49 61.23 42.14 83.82 142.49 158.72 119.73 212.51 120.63 697.14 199.46 67.53 65.27 65.30 37.65 93.92 211.01 3 IG9 Intergenic 0 4.13 4.09 5.45 3.21 6.36 4.80 6.13 3.76 3.59 4.69 22.02 32.79 19.57 25.45 13.81 41.30 29.36 15.68 3.49 20.99 4.70 4.44 7.69 4 IG9_AR2 ActiveIntergenicRegion 0 0.87 1.39 1.00 0.28 1.09 1.00 1.44 2.46 1.51 2.10 6.06 2.54 1.58 14.81 9.63 21.08 10.35 8.90 0.43 14.51 4.21 1.99 3.20 5 IG9_SR1 SilentIntergenicRegion 0 5.51 4.42 5.17 4.84 12.19 3.98 7.75 6.14 5.59 6.68 31.89 52.47 29.64 33.31 19.41 55.61 52.28 17.40 5.53 20.34 6.21 7.69 14.08 6 IG9_AR1 ActiveIntergenicRegion 0 8.12 8.26 13.16 6.42 9.06 12.00 12.25 3.49 4.98 6.94 38.38 62.68 39.04 35.11 15.02 60.22 37.24 25.24 6.47 32.59 3.98 5.17 8.54 7 ER1a ExonRegion 0 9.42 4.07 0.24 1.24 7.58 2.68 3.77 0.29 1.39 0.34 36.75 33.36 32.47 36.38 11.53 34.56 26.79 4.97 10.90 23.65 5.96 5.98 7.08 8 E1_Da NovelBoundary 0 9.93 8.35 20.46 7.89 20.63 7.38 14.26 9.53 12.04 7.39 82.71 73.97 52.76 57.57 14.09 77.84 64.80 24.21 8.66 53.37 6.24 8.51 4.35 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 I1 Intron 0 14.06 6.74 11.06 9.51 12.27 10.89 17.18 11.41 10.21 9.45 28.27 78.84 38.55 30.03 20.97 67.28 35.00 25.10 3.18 32.78 10.67 12.01 14.45 11 I1_AR1 ActiveIntronRegion 1 9.82 8.70 13.72 5.07 12.73 12.03 16.14 10.67 8.31 5.25 54.82 65.17 32.83 54.80 17.75 67.71 36.51 36.38 1.07 46.01 5.93 6.89 9.12 12 I1_SR1 SilentIntronRegion 1 11.10 8.18 18.73 8.18 17.50 9.05 19.06 11.10 9.98 9.63 50.03 103.98 34.90 38.75 20.11 61.57 35.16 22.83 2.10 37.44 7.50 10.40 6.44 13 I1_AR2 ActiveIntronRegion 1 15.89 8.01 21.22 19.59 18.23 10.46 20.49 12.92 15.28 14.30 33.94 189.09 53.90 26.13 27.82 42.97 25.86 7.83 3.54 33.44 2.36 13.59 6.32 14 I1_SR2 SilentIntronRegion 0 14.93 5.92 6.74 8.37 9.64 11.39 16.13 11.28 9.48 8.86 18.72 52.02 37.18 26.10 20.20 73.53 36.60 28.03 3.61 30.16 13.58 12.62 18.72 15 I1 Intron 0 60.26 16.19 18.81 28.27 66.40 47.39 47.52 28.71 22.85 36.05 77.08 156.79 107.87 150.81 61.46 193.48 108.21 36.60 12.78 50.31 19.01 39.64 48.01 16 I1_SR1 SilentIntronRegion 0 24.17 14.59 5.76 9.53 15.52 15.13 23.63 11.29 12.26 12.80 17.63 74.41 29.96 33.47 19.49 80.56 41.70 24.47 5.03 35.42 7.38 18.22 15.46 17 I1_AR1 ActiveIntronRegion 0 27.60 17.97 8.35 12.87 19.53 22.68 23.36 13.50 16.87 15.65 26.72 59.35 42.90 36.64 24.47 119.88 46.99 52.79 8.67 48.78 17.87 19.15 34.41 18 I1_SR2 SilentIntronRegion 0 17.51 9.29 9.14 12.20 18.22 16.85 19.29 11.69 12.08 12.71 24.90 65.59 47.88 39.06 18.05 81.17 46.18 30.48 4.51 33.90 12.92 17.00 17.41 19 I1_AR2 ActiveIntronRegion 1 109.86 16.97 39.58 62.47 165.28 127.51 113.51 59.57 38.86 75.17 211.45 255.50 195.13 421.55 161.66 432.83 269.26 55.63 32.04 88.60 42.52 89.26 120.93 20 I1_SR3 SilentIntronRegion 0 228.80 24.52 35.92 52.28 153.13 85.99 94.55 61.99 41.63 84.94 160.08 516.47 362.38 452.24 200.09 507.61 196.15 58.10 34.51 82.72 25.25 88.40 105.53 21 I1_AR3 ActiveIntronRegion 0 105.27 22.26 35.63 50.03 121.87 62.97 62.08 49.35 36.41 72.87 124.18 299.99 208.78 215.26 76.07 239.35 153.96 21.89 11.70 53.47 19.40 55.71 62.03 22 I1_SR4 SilentIntronRegion 0 102.93 35.69 28.82 48.16 127.37 76.00 70.55 53.29 40.87 55.16 108.02 254.92 155.59 208.67 70.70 271.80 161.97 27.90 19.15 44.10 17.37 59.11 59.38 23 E2_Aa NovelBoundary 1 112.91 22.56 43.91 48.21 54.07 39.18 86.82 45.14 34.26 41.56 120.24 216.97 145.45 191.77 72.69 832.77 127.82 60.65 39.53 90.19 29.53 53.15 74.61 24 ER2a ExonRegion 0 509.91 45.22 83.18 82.79 306.08 194.30 149.85 110.06 72.67 158.35 336.32 197.82 138.54 454.11 301.68 1732.51 510.96 136.67 163.34 142.92 102.42 224.81 545.96 25 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER3a ExonRegion 0 168.23 38.45 125.78 106.76 93.41 186.29 95.35 136.77 78.70 204.93 380.49 222.73 147.19 592.49 336.40 2307.00 590.33 164.32 221.69 157.32 117.82 281.59 768.72 27 E3a_E4a KnownJunction 1 17.78 9.47 52.04 89.83 4.07 8.18 16.96 77.63 59.37 92.97 48.01 0.00 7.79 14.13 0.00 451.16 44.88 123.24 40.66 27.61 14.83 38.21 77.85 28 I3_AR1 ActiveIntronRegion 0 51.96 2.80 5.45 5.12 23.42 20.77 26.23 5.56 11.74 7.04 8.52 20.37 5.40 20.06 20.41 15.68 15.93 3.07 2.93 11.65 1.34 6.19 2.87 29 I3_AR2 ActiveIntronRegion 1 64.02 6.10 3.68 8.18 36.79 29.80 39.39 10.37 12.04 9.03 7.97 28.68 5.28 19.08 47.15 18.20 0.00 3.70 3.19 13.03 0.00 6.25 0.00 30 I3_AR3 ActiveIntronRegion 1 64.40 4.36 2.45 7.59 27.52 25.67 38.21 10.37 10.23 9.18 7.73 17.94 9.38 17.17 46.83 23.78 0.00 3.17 3.19 12.77 0.00 6.25 0.00 31 ER4a ExonRegion 0 236.67 37.87 81.54 95.20 268.50 140.84 143.49 103.84 82.86 130.17 195.88 657.16 512.13 390.47 194.78 354.73 223.26 43.50 20.27 105.57 22.55 106.87 77.44 32 IG8 Intergenic 0 5.68 0.00 0.00 0.00 2.39 0.00 1.18 0.00 0.00 0.00 5.19 31.90 21.48 11.80 10.69 2.66 0.00 0.00 0.00 1.90 0.00 7.46 5.26 33 IG8_SR1 SilentIntergenicRegion 0 5.74 0.00 0.00 0.00 2.44 0.00 1.21 0.00 0.00 0.00 5.28 32.47 21.86 12.01 10.83 2.71 0.00 0.00 0.00 1.94 0.00 7.44 5.35