Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM36A Gene 0 13.52 22.79 10.11 23.89 18.49 32.24 19.86 28.44 23.20 23.74 12.28 12.39 15.08 18.42 20.03 22.16 18.17 11.07 10.42 24.47 7.90 15.27 11.67 2 411948 Transcript 0 0.93 1.99 9.85 13.96 1.83 5.96 0.92 15.45 14.32 13.95 7.15 3.08 2.37 5.84 6.66 11.92 8.31 20.95 14.29 31.79 12.05 2.52 11.94 3 366528 Transcript 0 3.51 0.81 1.70 3.20 2.34 3.54 11.14 7.43 2.09 0.83 2.77 0.00 2.46 0.71 1.02 0.30 0.24 1.45 2.54 1.74 0.16 1.55 0.00 4 391839 Transcript 0 15.11 25.78 39.18 35.23 37.35 72.91 45.89 86.26 129.63 99.95 58.75 5.55 26.30 41.50 48.83 87.93 40.95 39.01 24.00 41.48 13.90 14.14 28.08 5 498262 Transcript 0 3.70 0.00 0.00 1.76 0.00 2.10 2.03 0.00 2.95 0.00 0.00 0.00 0.00 4.94 4.45 3.33 3.93 0.00 0.00 3.26 3.15 7.96 4.27 6 464757 Transcript 0 19.95 34.07 5.52 26.51 23.62 35.59 26.49 26.52 16.39 23.04 8.63 19.77 21.86 13.47 7.48 17.34 13.58 10.77 10.14 29.79 4.77 13.81 10.07 7 ER1a ExonRegion 0 0.93 1.99 9.85 13.96 1.83 5.96 0.92 15.45 14.32 13.95 7.15 3.08 2.37 5.84 6.66 11.92 8.31 20.95 14.29 31.79 12.05 2.52 11.94 8 E1_Ab KnownBoundary 0 3.78 5.79 1.12 3.00 7.81 8.01 0.00 4.07 0.00 0.00 2.63 0.00 6.82 2.24 5.19 11.71 4.77 14.18 0.00 11.63 3.15 0.00 11.52 9 ER1b ExonRegion 0 1.27 2.03 2.76 4.33 3.55 8.34 6.19 3.72 1.14 4.82 1.69 0.00 2.23 7.23 7.62 3.05 2.15 2.40 1.75 12.18 3.31 1.82 2.13 10 E1_Ac KnownBoundary 0 0.00 0.00 1.57 1.96 0.00 2.56 6.45 4.72 0.00 4.54 0.00 0.00 0.00 2.30 10.63 0.00 0.00 4.81 0.00 2.62 2.47 0.00 0.00 11 E1_Ad KnownBoundary 0 0.00 2.76 9.02 3.13 0.00 7.15 0.00 22.80 5.93 9.16 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 4.52 11.38 0.00 2.88 0.00 12 ER1c ExonRegion 0 0.00 2.03 7.35 5.45 0.00 16.50 9.27 14.98 7.41 8.03 1.93 0.00 3.13 17.87 11.61 0.00 3.30 0.00 3.19 21.28 2.20 4.17 2.94 13 ER1d ExonRegion 0 66.09 91.45 37.94 26.95 158.70 278.40 133.71 75.91 87.76 83.48 104.66 6.03 49.27 134.60 213.71 220.24 147.55 49.74 55.30 104.61 78.38 79.62 105.60 14 E1a_E2a KnownJunction 0 0.00 0.00 3.25 1.76 0.00 0.00 13.03 6.78 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E3b KnownJunction 0 20.60 66.57 28.89 32.00 58.15 115.05 60.55 75.58 66.81 50.42 9.53 6.45 20.45 38.91 39.19 41.44 8.60 44.94 8.00 62.77 22.61 48.68 29.19 16 E1a_E4a KnownJunction 0 15.11 25.78 39.18 35.23 37.35 72.91 45.89 86.26 129.63 99.95 58.75 5.55 26.30 41.50 48.83 87.93 40.95 39.01 24.00 41.48 13.90 14.14 28.08 17 Ix Intron 0 12.60 18.36 10.17 20.48 21.59 21.31 22.00 19.05 19.62 21.67 11.51 14.95 16.16 22.38 11.54 17.41 21.56 18.70 10.39 49.25 5.50 8.40 25.95 18 Ix_AR1 ActiveIntronRegion 0 12.65 18.43 10.21 20.56 21.67 21.39 22.08 19.12 19.69 21.75 11.55 15.00 16.22 22.46 11.58 17.47 21.64 18.77 10.43 49.43 5.52 8.44 26.05 19 E2_Aa NovelBoundary 0 17.48 32.03 9.67 34.76 36.33 32.77 33.52 39.72 32.67 21.25 26.53 50.57 62.17 44.32 31.77 24.87 3.65 30.97 4.80 83.60 12.60 14.51 27.32 20 ER2a ExonRegion 0 3.65 0.00 1.84 3.75 3.27 3.36 10.33 8.50 2.74 0.89 3.06 0.00 1.04 2.12 3.06 0.91 0.73 1.90 2.83 2.01 0.49 2.08 0.00 21 E2_Da NovelBoundary 0 30.01 18.48 14.19 52.67 56.45 55.93 34.05 15.53 28.41 46.82 9.90 11.85 38.47 35.20 10.75 26.49 31.14 22.68 8.38 95.11 6.30 21.55 27.23 22 E2a_E3b KnownJunction 0 6.89 2.43 0.00 4.10 3.74 7.27 10.07 7.02 1.79 1.58 5.26 0.00 6.33 0.00 0.00 0.00 0.00 2.45 4.80 3.20 0.00 2.57 0.00 23 I2 Intron 0 22.01 38.38 10.69 36.03 37.57 33.17 40.30 25.88 20.96 30.41 11.20 35.28 38.67 19.22 10.14 17.23 16.73 7.77 10.76 56.02 4.36 17.23 14.03 24 I2_AR1 ActiveIntronRegion 0 14.10 18.60 9.08 31.09 31.12 33.36 37.25 19.98 24.34 28.72 12.49 35.66 38.64 17.29 9.91 16.55 14.77 7.42 11.08 49.70 4.16 13.26 12.85 25 I2_SR1 SilentIntronRegion 0 14.33 22.14 7.40 18.31 26.59 17.23 22.07 9.13 8.61 14.68 5.75 30.80 24.44 15.75 7.52 9.05 14.93 5.03 3.59 39.06 2.43 9.29 6.62 26 I2_AR2 ActiveIntronRegion 0 21.33 33.98 7.95 23.25 37.95 26.24 30.87 17.96 11.24 19.00 6.66 38.75 29.01 19.40 9.34 15.30 17.27 6.80 9.56 40.89 4.09 21.04 14.78 27 I2_SR2 SilentIntronRegion 0 13.34 30.70 7.23 28.57 25.49 33.86 35.90 21.14 18.61 20.54 10.76 26.95 34.04 19.43 9.25 11.76 15.47 10.24 3.73 63.61 6.76 9.16 15.49 28 I2_AR3 ActiveIntronRegion 0 40.22 73.95 17.75 60.33 57.28 41.86 58.55 46.12 28.75 51.51 14.56 40.75 52.54 22.34 12.43 25.96 20.19 7.84 18.78 71.79 3.61 28.21 16.36 29 E3_Aa NovelBoundary 0 36.45 153.59 38.67 86.70 77.67 49.74 99.59 87.53 50.98 56.54 35.90 141.95 81.00 46.38 33.38 43.07 34.88 19.36 34.73 109.43 7.97 35.88 11.78 30 ER3a ExonRegion 0 19.95 34.07 5.52 26.51 23.62 35.59 26.49 26.52 16.39 23.04 8.63 19.77 21.86 13.47 7.48 17.34 13.58 10.77 10.14 29.79 4.77 13.81 10.07 31 E3_Ab KnownBoundary 1 125.65 80.84 77.29 294.57 134.72 116.52 111.60 99.93 74.42 107.42 41.27 95.73 65.90 99.42 29.79 45.54 39.36 30.39 12.80 137.42 3.15 52.11 8.28 32 ER3b ExonRegion 0 14.26 22.16 46.32 61.13 24.60 37.82 27.30 103.65 80.59 73.46 49.09 12.57 14.85 41.23 38.33 37.31 85.30 25.09 12.38 57.28 45.49 29.17 22.18 33 E3_Da NovelBoundary 0 951.95 603.84 289.43 985.79 702.72 612.09 556.89 340.79 229.92 326.56 109.71 270.39 357.28 231.68 126.71 128.51 85.37 106.29 104.00 393.41 27.74 187.07 58.13 34 E3a_E4a KnownJunction 0 60.31 55.91 118.77 130.59 69.44 112.61 80.99 234.04 140.88 155.61 71.70 29.71 65.26 166.99 184.44 98.86 165.97 52.23 23.06 90.38 65.24 78.99 81.09 35 E3a_E4b KnownJunction 0 3.70 0.00 0.00 1.76 0.00 2.10 2.03 0.00 2.95 0.00 0.00 0.00 0.00 4.94 4.45 3.33 3.93 0.00 0.00 3.26 3.15 7.96 4.27 36 E4_Aa NovelBoundary 0 163.51 132.34 199.61 640.91 271.22 124.64 110.10 173.25 145.11 188.36 57.49 83.43 47.56 42.32 46.36 41.10 21.51 42.86 42.73 234.51 7.97 90.56 17.07 37 E4_Ab NovelBoundary 0 157.88 129.98 77.91 375.48 139.13 73.88 80.91 127.45 78.59 98.34 34.64 58.82 80.68 47.21 19.66 46.83 26.46 52.44 12.14 163.31 2.47 77.46 19.97 38 ER4a ExonRegion 0 60.53 92.73 141.41 165.18 96.33 178.25 99.56 323.22 289.76 276.86 123.32 43.29 78.79 209.51 243.12 175.36 199.37 93.87 50.97 121.70 86.39 129.18 112.18 39 ER4b ExonRegion 0 46.64 83.20 130.45 215.08 59.46 94.02 52.15 326.03 284.91 247.83 119.51 43.44 53.02 219.83 239.72 191.22 167.79 104.44 94.05 142.16 56.14 202.63 107.01 40 E4_Da NovelBoundary 0 602.48 626.34 270.84 1007.66 635.40 544.18 319.78 246.65 228.44 267.09 136.46 216.07 258.59 89.18 89.25 91.86 76.58 126.60 72.57 446.65 20.08 207.46 61.03 41 E4a_E5a KnownJunction 0 53.42 149.78 128.68 277.62 93.55 107.04 64.48 339.56 292.30 236.84 158.62 114.49 100.64 294.02 224.24 213.36 182.51 94.35 142.40 216.87 74.94 278.80 86.39 42 E5_Aa NovelBoundary 1 150.99 227.79 141.15 376.84 307.47 275.18 215.47 112.50 121.44 184.17 67.70 130.09 179.05 123.55 52.04 64.68 48.06 51.86 66.17 279.13 12.05 90.07 23.47 43 ER5a ExonRegion 0 24.50 43.55 69.82 131.24 57.69 142.88 61.05 156.17 165.12 126.40 70.14 33.61 41.26 101.81 126.81 128.11 97.70 38.09 50.83 77.51 32.05 87.10 50.48 44 E5_Da KnownBoundary 0 95.57 172.14 52.78 102.35 221.14 392.22 234.02 71.26 43.84 50.26 52.22 114.04 61.68 11.83 40.67 37.60 40.11 17.66 0.00 39.63 2.66 27.98 22.54 45 E5_Db KnownBoundary 0 102.09 161.62 6.83 9.42 102.21 213.80 144.46 9.57 8.36 6.80 24.01 12.15 28.08 7.12 16.69 11.36 21.69 9.62 0.00 5.88 0.00 21.31 0.00 46 ER5b ExonRegion 0 22.68 59.05 11.86 12.41 37.46 141.14 70.60 13.70 8.65 2.17 0.00 5.26 14.41 1.22 1.24 9.98 3.30 5.87 0.00 4.94 0.00 3.13 2.52 47 ER5c ExonRegion 0 7.16 11.73 0.53 0.96 2.10 5.06 4.51 0.22 0.74 1.06 0.00 0.31 1.19 0.00 0.20 0.53 0.08 0.57 0.00 0.01 0.00 0.47 0.00 48 E5_Dc KnownBoundary 0 10.37 0.00 10.56 11.59 36.59 10.73 2.12 4.56 9.26 3.71 5.16 0.00 8.28 2.88 0.00 0.00 0.00 0.00 8.75 3.20 0.00 2.45 0.00 49 ER5d ExonRegion 0 0.18 0.53 0.95 1.41 0.40 1.11 0.17 1.11 0.64 0.44 0.17 3.11 3.93 3.77 9.41 0.39 0.14 0.79 0.55 1.10 0.76 0.45 0.51