Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PLD5 Gene 0 7.03 271.27 6.63 4.20 11.30 3.86 30.80 20.76 11.22 0.69 1.43 0.73 0.12 0.11 0.05 0.59 0.00 43.71 11.64 100.95 0.87 2.62 2.46 2 366545 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.86 1.47 0.00 0.00 0.00 3 467561 Transcript 0 0.91 23.25 0.22 0.27 0.18 0.16 2.21 2.19 1.20 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 9.94 0.51 18.42 0.00 0.03 0.00 4 427495 Transcript 0 0.00 19.88 0.00 1.36 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 8.51 0.00 0.00 0.00 5 314833 Transcript 0 0.00 21.38 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.96 4.33 16.55 0.00 0.00 0.00 6 459864 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 442594 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 474177 Transcript 0 0.00 5.75 0.10 0.23 0.00 0.00 1.98 0.57 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.73 0.18 4.48 0.00 0.00 0.00 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 1.59 1.75 0.00 0.00 0.00 11 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.26 0.00 0.00 0.00 12 E1a_E1c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 2.94 0.00 0.00 0.00 13 ER1c ExonRegion 0 0.00 1.88 0.00 0.00 0.54 0.48 0.55 0.31 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 5.07 1.54 7.10 0.00 0.09 0.00 14 E1_Ac KnownBoundary 0 0.00 12.43 0.00 0.00 4.16 0.00 6.71 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.02 4.80 23.52 0.00 2.33 0.00 15 ER1d ExonRegion 0 0.97 50.23 2.91 2.02 2.67 2.80 11.44 4.81 3.52 0.55 2.31 0.58 0.00 0.22 0.00 0.58 0.00 33.82 6.27 63.96 0.00 1.30 0.94 16 E1b_E3a KnownJunction 0 2.89 144.65 1.30 1.40 0.00 2.67 18.55 6.16 9.37 0.00 4.95 0.00 0.00 0.00 0.00 3.33 0.00 51.15 0.00 130.20 0.00 0.00 0.00 17 I1 Intron 0 0.86 73.10 1.28 1.07 1.94 0.34 15.77 4.86 1.13 0.21 0.26 0.08 0.23 0.02 0.07 0.56 0.00 5.49 1.20 23.24 0.02 0.04 0.13 18 I1_SR1 SilentIntronRegion 0 0.98 82.11 1.47 1.03 2.18 0.43 17.53 4.45 0.99 0.23 0.33 0.13 0.30 0.04 0.07 0.55 0.00 4.38 1.12 20.58 0.02 0.03 0.08 19 I1_AR1 ActiveIntronRegion 0 1.88 59.52 10.05 4.92 4.07 1.72 33.73 23.05 4.77 0.21 2.05 0.00 0.87 0.00 0.55 1.45 0.00 7.96 4.13 33.64 0.27 1.16 0.36 20 I1_SR2 SilentIntronRegion 0 0.65 58.97 0.68 1.02 1.47 0.15 12.34 4.95 1.25 0.19 0.08 0.00 0.11 0.00 0.04 0.56 0.00 7.20 1.24 27.22 0.02 0.03 0.21 21 E2_Aa NovelBoundary 0 3.41 67.36 1.83 0.00 0.00 0.00 7.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.30 0.00 47.62 0.00 0.00 0.00 22 E2_Ab NovelBoundary 0 0.00 77.95 0.00 1.90 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.02 0.00 21.73 0.00 0.00 0.00 23 ER2a ExonRegion 0 0.00 19.88 0.00 1.36 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 8.51 0.00 0.00 0.00 24 E2_Ac KnownBoundary 0 0.00 59.86 0.00 1.56 0.00 0.00 10.69 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.19 0.00 52.54 0.00 0.00 0.00 25 ER2b ExonRegion 0 0.00 50.05 0.00 2.33 0.00 0.00 4.06 0.17 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.64 1.23 31.98 0.00 0.00 0.00 26 ER2c ExonRegion 0 0.00 48.61 0.31 1.38 1.92 0.00 6.68 1.75 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.41 6.33 21.01 0.00 0.00 0.00 27 E2_Da NovelBoundary 0 0.00 73.80 1.74 3.80 0.00 0.00 16.30 4.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.88 0.00 48.39 0.00 0.00 0.00 28 E2a_E3a KnownJunction 0 0.00 5.85 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.90 0.00 0.00 0.00 0.00 0.00 29 I2 Intron 0 1.27 87.07 0.82 1.24 2.32 0.31 12.98 3.96 1.01 0.17 0.13 0.51 0.15 0.01 0.02 0.63 0.00 9.37 1.61 26.63 0.03 0.07 0.23 30 I2_SR1 SilentIntronRegion 0 1.27 87.08 0.82 1.24 2.32 0.31 12.98 3.97 1.01 0.17 0.13 0.51 0.15 0.01 0.02 0.63 0.00 9.37 1.61 26.63 0.03 0.07 0.23 31 ER3a ExonRegion 0 2.45 137.92 2.59 2.67 4.93 0.56 25.67 11.57 9.07 0.00 1.69 0.00 0.00 0.72 0.00 1.81 0.00 68.43 3.76 112.25 0.00 0.86 1.85 32 E3_Ab KnownBoundary 0 0.00 190.69 1.83 2.06 4.07 2.61 37.85 10.43 6.97 0.00 0.00 0.00 0.00 0.00 0.00 4.10 0.00 68.65 8.94 118.44 0.00 2.69 0.00 33 ER3b ExonRegion 0 0.00 167.67 5.02 1.01 6.56 5.68 34.08 14.73 11.41 0.00 1.75 0.00 0.00 0.00 0.00 2.34 0.00 78.66 25.56 141.49 0.00 2.93 7.34 34 E3a_E4a KnownJunction 0 0.00 162.14 5.29 0.00 7.39 8.40 32.28 20.33 12.73 0.00 2.32 0.00 0.00 0.00 0.00 0.00 0.00 72.09 26.82 107.64 0.00 2.45 7.68 35 E3a_E5a NovelJunction 0 0.00 21.18 1.69 0.00 3.74 0.00 0.00 2.51 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 0.00 20.65 0.00 0.00 0.00 36 E3b_E4a KnownJunction 0 0.00 27.89 1.51 0.00 0.00 2.44 11.79 4.76 5.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.89 4.80 48.19 0.00 0.00 0.00 37 E3b_E5a KnownJunction 0 0.00 21.38 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.96 4.33 16.55 0.00 0.00 0.00 38 ER3c ExonRegion 0 0.00 44.45 1.23 0.00 2.68 1.83 7.94 3.70 6.70 0.00 2.49 0.00 0.00 0.00 0.00 0.00 0.00 24.28 12.74 60.18 0.00 0.00 0.00 39 I3_SR3 SilentIntronRegion 0 0.00 23.95 0.00 0.15 0.00 0.00 11.77 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 16.63 0.00 21.04 0.00 0.00 0.00 40 I3_AR3 ActiveIntronRegion 0 0.00 12.31 0.00 1.36 0.00 0.00 8.83 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 16.01 2.30 25.41 0.00 0.00 0.00 41 ER4a ExonRegion 0 1.88 191.28 4.79 1.25 4.97 4.60 27.62 23.96 18.29 0.00 3.47 0.00 0.00 0.54 0.00 1.28 0.00 77.58 18.64 143.86 2.00 2.64 5.13 42 E4a_E5a KnownJunction 0 10.52 237.33 4.82 3.96 3.74 0.00 50.79 33.19 25.38 0.00 2.05 0.00 0.00 2.65 0.00 8.03 0.00 78.68 22.02 188.49 0.00 2.88 0.00 43 E5_Ab NovelBoundary 0 0.00 167.93 4.05 6.19 0.00 8.86 33.65 25.59 18.43 0.00 0.00 0.00 0.00 2.35 0.00 4.19 0.00 72.75 0.00 113.71 2.41 2.33 7.60 44 ER5a ExonRegion 0 6.61 242.63 4.98 5.11 2.84 5.04 44.02 35.43 26.01 0.00 0.97 0.00 0.00 1.62 0.00 8.92 0.00 92.73 17.12 172.87 1.24 5.08 5.32 45 ER5b ExonRegion 0 2.12 302.20 4.83 3.30 7.05 11.67 41.70 35.52 22.72 0.00 1.31 0.00 0.00 0.48 0.00 1.34 0.00 116.62 13.37 183.49 6.64 5.02 4.88 46 E5_Da NovelBoundary 0 3.26 297.45 6.45 2.06 8.40 9.82 40.45 22.43 12.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.30 25.41 138.57 10.44 4.96 3.33 47 E5a_E7a KnownJunction 0 2.74 62.23 0.00 0.00 0.00 0.00 4.02 6.24 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.79 0.00 39.95 0.00 0.00 0.00 48 E5_Db NovelBoundary 0 0.00 21.64 0.00 0.00 0.00 0.00 21.68 0.00 0.00 0.00 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 27.42 0.00 0.00 0.00 49 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E5b_E7a KnownJunction 0 14.52 359.21 7.69 6.93 4.07 0.00 40.94 18.52 16.96 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 69.97 35.39 160.05 9.02 2.39 8.71 51 ER5c ExonRegion 0 7.37 301.54 7.89 4.58 5.89 4.47 34.21 17.22 15.51 0.00 0.23 0.00 0.00 0.65 0.00 0.00 0.00 79.01 30.96 153.70 10.49 2.58 7.28 52 ER6a ExonRegion 0 0.00 11.50 0.20 0.45 0.00 0.00 3.96 1.14 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.46 0.35 8.96 0.00 0.00 0.00 53 ER7a ExonRegion 0 4.89 300.11 6.56 7.13 5.96 2.79 30.77 27.05 15.17 0.00 1.87 0.00 0.00 0.52 0.00 2.37 0.00 83.29 14.04 155.98 3.49 4.70 2.23 54 E7a_E8a KnownJunction 0 7.19 460.25 3.10 3.06 4.07 2.67 29.90 22.88 7.96 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 65.21 3.48 133.01 5.62 3.12 0.00 55 Ix_AR1 ActiveIntronRegion 0 0.00 35.11 1.23 1.83 3.10 0.00 14.60 7.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.78 0.00 13.72 0.00 0.00 0.00 56 I7_AR1 ActiveIntronRegion 0 2.78 57.55 3.85 0.00 0.00 0.74 6.14 7.25 1.03 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.39 12.13 0.00 15.21 0.00 0.00 1.18 57 I7_SR2 SilentIntronRegion 0 1.32 58.12 3.47 1.79 1.98 0.36 8.70 7.23 0.75 0.27 0.38 0.14 0.00 0.10 0.00 0.12 0.00 4.65 2.05 8.66 0.00 0.00 0.11 58 I7_AR2 ActiveIntronRegion 0 1.48 54.29 4.45 2.02 1.33 0.00 13.77 15.97 2.01 0.16 0.45 0.36 0.45 0.16 0.00 0.14 0.00 9.77 1.77 24.42 0.00 0.00 0.00 59 I7_AR5 ActiveIntronRegion 0 1.60 59.07 0.53 0.00 0.00 0.53 4.20 0.75 0.00 0.00 0.56 1.04 0.00 0.00 0.00 0.00 0.00 5.15 0.00 17.69 0.00 0.00 2.95 60 I7_SR7 SilentIntronRegion 0 1.05 67.90 1.18 1.21 1.66 0.55 7.02 6.89 1.09 0.04 0.05 0.00 0.00 0.03 0.00 0.15 0.00 5.30 0.63 11.54 0.00 0.00 0.07 61 I7_AR7 ActiveIntronRegion 0 0.28 71.34 0.73 2.38 5.72 0.30 6.90 8.86 2.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 1.28 14.14 0.00 0.00 0.00 62 I7_AR8 ActiveIntronRegion 0 0.00 73.11 1.97 1.92 4.93 2.23 5.65 18.80 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.33 0.00 17.59 0.00 0.00 0.00 63 I7_AR9 ActiveIntronRegion 0 0.00 84.54 3.68 0.39 5.35 1.83 4.35 16.54 3.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.88 3.64 13.37 0.00 0.00 0.00 64 I7_AR10 ActiveIntronRegion 0 0.00 88.23 3.68 0.00 5.35 0.00 3.02 14.69 5.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.19 6.37 20.92 0.00 0.00 0.00 65 ER8a ExonRegion 0 11.13 420.04 5.89 5.13 10.38 8.97 43.21 29.63 11.07 0.96 2.77 0.92 0.00 0.00 0.00 1.53 0.00 80.79 24.87 155.79 1.88 4.65 1.88 66 E8_Da KnownBoundary 0 0.00 18.75 1.71 3.80 0.00 0.00 3.97 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 0.00 18.15 0.00 0.00 0.00 67 E8a_E9a KnownJunction 0 18.45 527.08 7.16 5.99 39.90 5.39 50.70 23.12 8.65 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.87 24.00 127.32 0.00 2.45 7.43 68 ER8b ExonRegion 0 0.00 5.65 0.66 0.82 0.00 0.00 2.07 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 8.21 0.00 0.00 0.00 69 ER9a ExonRegion 0 12.08 496.39 10.98 7.84 15.66 3.95 49.27 31.47 13.78 2.08 3.91 3.79 0.00 0.00 0.00 0.63 0.00 81.76 23.27 160.83 0.84 3.21 1.65 70 E9_Da NovelBoundary 0 0.00 53.54 0.00 0.00 3.82 0.00 6.05 4.97 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.21 0.00 16.94 0.00 0.00 0.00 71 E9a_E10a KnownJunction 0 19.86 488.33 16.11 3.10 28.44 13.91 63.33 26.66 8.01 4.51 2.68 0.00 0.00 0.00 0.00 4.36 0.00 53.97 13.93 126.36 0.00 2.88 0.00 72 E10_Aa NovelBoundary 0 3.11 109.19 0.00 3.80 0.00 0.00 20.36 2.18 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 13.49 0.00 0.00 0.00 73 ER10a ExonRegion 0 13.75 504.14 10.91 4.23 21.01 7.38 44.22 24.77 14.39 1.46 2.08 1.87 0.00 0.00 0.00 0.39 0.00 58.33 19.62 154.94 1.51 3.34 4.12 74 E10_Da NovelBoundary 0 0.00 76.63 0.00 3.46 0.00 0.00 7.91 1.64 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.12 0.00 19.43 0.00 2.51 0.00 75 E10a_E11a KnownJunction 0 13.63 370.33 10.14 3.33 8.66 4.88 62.76 25.18 16.67 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.53 25.79 148.22 2.84 3.06 7.60 76 I10 Intron 0 0.88 58.49 0.72 0.93 1.39 1.05 7.09 3.62 1.51 0.19 0.15 0.00 0.00 0.00 0.00 0.30 0.00 11.11 1.37 16.01 0.06 0.18 0.19 77 I10_SR1 SilentIntronRegion 0 0.88 58.52 0.72 0.93 1.39 1.05 7.10 3.62 1.51 0.19 0.15 0.00 0.00 0.00 0.00 0.30 0.00 11.11 1.37 16.01 0.06 0.18 0.19 78 ER11a ExonRegion 0 21.53 424.63 12.70 4.20 16.61 3.94 63.77 33.58 18.67 0.56 0.86 1.77 0.00 0.00 0.00 0.00 0.00 85.82 14.68 170.95 1.84 2.83 6.26 79 E11a_E12a KnownJunction 0 13.19 370.72 28.44 6.93 3.82 4.43 25.48 36.43 21.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 110.47 15.72 181.52 2.47 5.33 16.13 80 I11 Intron 0 0.65 65.54 0.68 0.81 1.62 0.33 5.31 3.85 1.02 0.26 0.05 0.18 0.00 0.00 0.00 0.00 0.00 8.24 2.01 12.67 0.06 0.08 0.08 81 I11_SR1 SilentIntronRegion 0 1.26 65.51 0.00 0.48 2.54 0.00 5.35 0.61 0.66 0.20 0.00 1.70 0.00 0.00 0.00 0.00 0.00 11.90 1.51 16.19 0.00 0.00 0.00 82 I11_SR2 SilentIntronRegion 0 0.50 66.87 0.84 0.81 1.57 0.41 5.11 4.43 1.05 0.30 0.06 0.00 0.00 0.00 0.00 0.00 0.00 8.03 2.12 11.98 0.07 0.03 0.05 83 ER12a ExonRegion 0 14.14 454.08 10.89 8.64 22.71 5.69 49.73 35.38 18.81 1.44 1.81 1.43 0.42 0.00 0.03 0.40 0.00 46.15 17.88 139.54 0.87 4.15 4.66 84 E12_Da KnownBoundary 0 12.45 453.34 9.99 3.26 22.75 12.95 61.17 35.45 13.66 0.99 0.00 0.00 0.00 0.00 4.45 0.00 0.00 15.17 11.95 79.13 0.00 11.57 0.00 85 ER12b ExonRegion 0 4.16 290.41 9.06 2.24 12.14 3.50 29.85 21.33 10.60 0.46 0.68 0.00 0.00 0.00 0.29 0.52 0.00 29.85 5.43 86.62 0.19 2.88 0.51 86 IG15_SR3 SilentIntergenicRegion 0 3.18 276.56 2.10 3.87 8.74 4.98 21.50 23.05 10.34 0.76 0.37 0.23 0.00 0.00 0.00 0.00 0.00 30.38 7.24 71.62 0.42 0.87 0.46 87 IG15_AR2 ActiveIntergenicRegion 0 5.70 302.50 3.84 5.19 10.01 2.14 16.43 30.95 8.85 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.96 4.18 37.19 0.00 0.82 0.30 88 IG15_SR2 SilentIntergenicRegion 0 3.46 270.95 2.69 2.73 14.18 5.51 17.58 17.28 6.09 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 12.47 2.66 36.48 0.00 0.00 0.00 89 IG15_AR1 ActiveIntergenicRegion 0 1.92 321.34 4.75 2.29 6.69 2.94 15.30 15.75 8.24 0.38 0.00 0.00 0.00 0.00 0.00 0.29 0.00 4.71 1.60 33.76 0.00 0.00 0.00