Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF496 Gene 0 19.37 27.31 27.64 33.26 14.58 19.41 15.71 17.87 20.98 32.28 30.23 16.60 20.03 43.34 30.00 29.39 34.53 33.83 26.70 38.89 23.04 16.56 22.08 2 478225 Transcript 0 0.00 0.51 0.31 0.34 0.00 2.29 1.32 0.00 0.00 0.29 1.45 0.00 0.00 1.62 2.18 3.72 0.00 0.00 1.59 1.06 1.10 4.69 2.94 3 477903 Transcript 0 3.48 5.79 10.67 9.09 0.00 7.27 6.18 11.01 8.04 6.90 13.90 5.70 6.33 9.30 5.07 3.42 30.11 12.10 11.77 6.01 0.00 3.06 7.26 4 366498 Transcript 0 0.00 21.31 0.00 0.00 3.14 0.00 7.95 4.23 5.79 10.77 11.74 6.30 0.00 14.89 8.90 12.22 3.65 8.58 0.00 7.61 0.00 2.82 3.84 5 294753 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 461277 Transcript 0 0.53 5.59 1.53 0.68 0.67 1.83 2.65 2.59 1.24 2.58 6.77 2.16 3.52 7.31 5.80 2.97 4.13 3.23 2.39 6.91 1.10 0.52 3.67 7 465126 Transcript 0 10.76 13.64 7.57 19.13 10.68 12.30 8.81 12.37 10.70 21.35 14.73 9.24 10.81 18.31 11.53 15.24 11.39 13.04 11.78 14.27 7.66 8.33 15.33 8 462139 Transcript 0 23.14 16.38 11.23 25.17 13.99 12.87 11.98 9.38 18.43 16.88 16.73 14.24 17.00 34.93 21.34 25.08 27.16 20.44 15.03 21.52 15.02 9.24 16.85 9 ER1a ExonRegion 0 0.00 1.02 0.61 0.68 0.00 4.58 2.65 0.00 0.00 0.57 0.97 0.00 0.00 3.25 4.35 7.43 0.00 0.00 3.19 2.13 2.20 9.38 5.87 10 ER1b ExonRegion 0 5.70 15.60 5.68 2.43 0.00 12.50 16.78 2.39 0.00 2.77 8.29 0.00 0.26 19.73 21.79 18.48 13.86 1.14 16.27 7.27 14.02 14.24 19.17 11 E1a_E2b KnownJunction 0 0.00 9.14 11.47 7.03 0.00 7.55 15.77 6.90 1.59 12.52 4.47 0.00 0.00 14.54 0.00 3.33 8.79 17.66 4.24 11.06 5.56 3.06 11.52 12 ER2a ExonRegion 0 1.55 3.35 3.59 0.04 6.18 7.43 2.81 2.48 1.48 3.87 5.62 0.00 0.10 15.86 5.17 6.50 5.72 3.43 6.90 2.39 6.66 0.62 3.45 13 E2_Ab KnownBoundary 0 11.04 0.00 5.09 1.86 24.70 38.84 11.26 11.46 5.24 13.40 10.21 0.00 0.00 39.44 4.45 8.54 17.48 4.81 0.00 6.52 12.05 6.00 8.37 14 ER2b ExonRegion 0 4.07 8.56 26.92 16.18 4.73 12.35 5.43 22.58 19.54 44.91 41.59 9.77 13.61 72.57 46.66 35.90 62.53 43.68 60.85 49.86 37.04 27.08 31.77 15 E2a_E3a KnownJunction 1 6.52 15.06 76.19 27.90 3.31 24.59 14.26 46.91 55.99 113.25 149.04 24.16 26.46 122.14 56.25 61.61 180.27 100.28 84.90 113.58 64.62 34.05 34.15 16 ER3a ExonRegion 1 7.24 24.23 60.25 40.80 9.66 51.69 33.33 46.74 43.14 106.74 112.96 31.65 38.61 114.00 64.88 54.52 141.71 116.97 109.70 117.08 78.76 40.74 37.95 17 E3_Da NovelBoundary 0 0.00 5.92 7.36 1.47 0.00 0.00 8.17 2.01 5.35 3.28 0.00 6.30 6.82 7.59 8.90 4.27 12.90 4.19 0.00 11.51 8.90 5.94 3.59 18 E3a_E4a KnownJunction 1 13.11 64.46 55.62 57.20 12.31 24.36 47.65 56.15 48.18 148.30 117.40 18.01 41.88 133.44 122.13 81.69 90.14 139.08 98.45 113.58 98.97 68.95 43.54 19 E3a_E4b KnownJunction 0 3.48 5.79 10.67 9.09 0.00 7.27 6.18 11.01 8.04 6.90 13.90 5.70 6.33 9.30 5.07 3.42 30.11 12.10 11.77 6.01 0.00 3.06 7.26 20 E4_Aa NovelBoundary 0 2.82 7.89 23.62 1.70 12.99 8.57 4.15 5.87 4.80 0.00 9.32 0.00 12.66 2.47 8.90 11.88 26.83 4.06 25.98 6.20 5.37 6.00 24.50 21 ER4a ExonRegion 0 11.68 48.81 37.81 37.62 10.42 24.30 20.74 42.96 37.21 121.72 137.52 39.60 47.29 138.83 104.38 60.50 141.53 116.99 96.69 122.07 108.44 52.57 72.99 22 E4_Ab KnownBoundary 1 21.26 29.86 37.93 31.20 7.39 36.97 13.78 30.81 31.13 102.16 100.45 65.72 53.24 102.36 91.97 36.14 114.54 79.84 63.81 101.82 106.57 55.66 79.56 23 ER4b ExonRegion 0 8.76 34.39 73.03 46.62 7.70 28.08 21.11 34.03 32.66 91.66 82.76 27.73 23.13 136.35 78.56 61.24 95.70 111.48 84.26 106.15 83.86 37.93 58.63 24 E4_Ac KnownBoundary 1 6.59 68.15 98.22 77.75 16.30 49.97 30.12 46.99 53.65 119.97 123.87 6.30 52.76 131.38 86.66 63.40 92.75 160.51 104.85 140.81 88.65 24.55 56.85 25 ER4c ExonRegion 1 11.49 53.42 93.00 57.95 10.70 36.74 26.53 42.47 45.37 117.72 112.35 24.12 33.58 143.82 90.25 63.58 126.97 91.40 88.74 138.45 96.92 34.42 50.13 26 E4a_E5a KnownJunction 1 13.85 93.34 116.20 72.68 16.21 40.15 30.43 52.90 62.79 127.84 152.72 47.87 12.66 191.30 89.62 128.51 129.50 146.00 116.14 175.90 109.35 41.82 82.63 27 ER5a ExonRegion 0 18.50 111.70 96.54 83.98 18.46 34.84 46.97 59.79 70.73 140.81 146.21 42.86 52.87 181.39 112.33 121.81 133.27 161.18 132.32 173.18 110.69 58.94 79.90 28 E5_Da KnownBoundary 1 33.12 158.00 113.69 94.13 50.08 73.31 58.25 72.33 54.77 144.81 181.62 37.96 53.73 182.94 150.32 104.42 130.81 199.35 216.95 172.64 133.75 56.70 75.03 29 ER5b ExonRegion 1 18.53 134.49 108.32 100.01 39.18 71.31 39.87 70.25 66.53 136.71 149.82 30.50 84.42 187.39 105.93 99.34 114.28 172.42 147.31 169.46 124.39 59.08 58.47 30 E5b_E6b KnownJunction 1 13.26 172.60 146.65 135.65 53.48 113.63 34.54 87.36 93.86 157.68 139.72 17.86 157.62 199.60 69.47 141.33 142.87 183.06 122.07 185.30 104.84 86.09 68.21 31 ER5c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER6a ExonRegion 0 10.36 3.73 1.59 5.95 1.75 1.23 5.49 6.15 3.37 4.05 1.64 2.91 0.67 2.99 3.77 1.90 4.31 5.64 4.10 6.87 2.71 0.45 2.94 33 E6_Ab KnownBoundary 1 7.33 0.00 3.67 9.26 7.98 0.00 4.50 8.95 2.69 3.28 0.00 13.95 0.00 0.00 4.45 0.00 0.00 7.71 0.00 9.46 3.15 0.00 4.35 34 ER6b ExonRegion 0 24.95 122.71 128.87 149.49 55.77 88.17 50.28 102.23 104.51 182.72 172.05 64.43 109.35 231.33 154.19 211.65 162.22 224.96 202.73 181.02 116.59 88.80 126.04 35 E6_Da NovelBoundary 0 6.89 6.71 24.87 15.55 0.00 0.00 8.21 11.46 15.83 15.66 9.21 18.76 19.15 21.43 33.50 12.56 26.18 32.75 8.09 29.15 21.93 0.00 28.68 36 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E6a_E7b KnownJunction 0 0.00 21.31 0.00 0.00 3.14 0.00 7.95 4.23 5.79 10.77 11.74 6.30 0.00 14.89 8.90 12.22 3.65 8.58 0.00 7.61 0.00 2.82 3.84 38 E6a_E8b KnownJunction 0 23.71 94.98 101.53 145.17 40.58 98.41 49.29 104.62 72.77 168.75 111.29 55.67 142.69 227.32 129.30 140.22 139.32 129.09 124.90 153.59 82.47 86.09 100.56 39 I6 Intron 0 13.07 8.07 9.39 11.94 5.90 5.93 12.45 10.22 8.12 18.33 15.34 11.15 24.90 25.26 25.91 21.84 21.83 26.47 20.60 28.77 20.07 7.35 17.26 40 I6_SR1 SilentIntronRegion 0 13.14 8.12 9.44 12.01 5.93 5.96 12.53 10.28 8.16 18.44 15.42 11.22 25.04 25.40 26.06 21.97 21.95 26.61 20.72 28.93 20.18 7.39 17.36 41 E7_Aa NovelBoundary 0 24.60 15.92 1.45 12.45 0.00 0.00 16.21 9.65 6.68 7.52 4.63 12.60 13.31 2.41 0.00 11.11 0.00 4.81 8.85 0.00 0.00 8.57 4.18 42 E7_Ab NovelBoundary 0 10.22 11.97 9.52 9.66 3.82 2.90 7.55 4.35 4.48 5.61 0.00 0.00 0.00 0.00 5.19 15.72 4.68 6.59 0.00 5.75 2.59 0.00 0.00 43 ER7a ExonRegion 0 1.06 11.18 3.06 1.36 1.34 3.67 5.30 5.19 2.47 5.16 13.53 4.33 7.04 14.62 11.61 5.94 8.25 6.47 4.78 13.83 2.20 1.04 7.34 44 ER7b ExonRegion 0 12.50 14.41 6.18 6.73 11.05 14.04 21.23 2.99 5.56 15.55 22.26 20.27 20.51 34.87 20.80 13.69 23.17 18.15 8.90 29.09 7.41 9.79 17.21 45 E7_Da NovelBoundary 0 17.86 6.25 18.69 36.99 3.99 26.80 33.03 16.68 20.14 17.19 10.00 11.70 18.51 14.54 48.95 24.61 30.86 35.69 26.17 36.24 8.40 20.64 22.45 46 E7a_E8b KnownJunction 0 6.67 3.22 5.35 0.00 7.56 0.00 0.00 6.61 11.31 13.27 11.74 0.00 0.00 14.36 11.37 3.67 9.07 5.10 4.71 14.32 0.00 5.27 0.00 47 I7 Intron 0 18.78 11.31 7.28 15.29 10.60 6.72 15.00 5.66 15.40 9.93 16.93 22.82 22.77 21.53 22.25 17.42 20.65 17.08 10.70 30.36 11.43 7.77 18.71 48 I7_SR1 SilentIntronRegion 0 16.23 12.62 7.33 18.17 13.19 7.70 18.29 5.17 14.00 8.11 14.35 21.72 24.45 23.36 30.06 18.63 25.31 23.09 13.38 35.86 14.35 7.74 19.84 49 I7_AR1 ActiveIntronRegion 0 23.64 10.16 8.15 15.62 12.55 6.67 21.88 8.97 27.61 17.11 31.43 37.07 28.59 26.21 22.31 20.84 23.46 16.70 11.18 38.76 9.86 11.74 23.40 50 I7_SR2 SilentIntronRegion 0 18.77 10.67 6.80 12.49 7.28 5.84 8.63 4.50 10.71 8.09 12.19 16.86 18.42 17.58 15.08 14.67 15.03 11.77 8.01 21.23 9.54 5.86 15.40 51 E8_Aa NovelBoundary 0 21.11 28.15 17.24 25.50 0.00 17.04 12.63 6.70 22.16 14.10 27.69 18.01 34.41 27.67 44.63 20.68 24.40 25.54 0.00 35.41 25.58 9.25 37.82 52 ER8a ExonRegion 0 19.09 19.04 14.50 22.62 15.43 16.84 17.27 11.99 22.48 14.75 19.67 19.49 24.99 32.45 27.44 29.02 30.49 23.46 13.29 34.05 16.84 10.04 21.39 53 E8_Ab KnownBoundary 0 55.64 39.93 24.54 40.45 15.62 17.09 13.07 15.61 45.51 30.78 38.33 22.36 7.79 58.86 19.16 36.32 49.28 30.92 22.12 40.78 32.62 10.53 34.15 54 ER8b ExonRegion 0 56.34 141.98 155.46 177.62 43.28 104.25 66.22 104.02 124.61 196.98 187.65 83.15 144.18 243.14 157.88 156.58 207.21 160.39 170.92 188.33 128.42 103.86 110.79 55 E8_Da KnownBoundary 0 14.45 9.47 6.92 15.68 0.00 2.84 7.77 7.64 8.62 9.40 14.16 12.45 13.64 9.59 14.09 23.07 17.11 9.33 3.48 8.69 13.10 6.12 4.18 56 E8a_E8c KnownJunction 0 87.20 236.54 180.06 203.07 26.91 132.20 73.53 106.42 129.45 212.08 183.84 93.03 175.48 248.04 202.61 212.08 175.69 171.58 269.75 241.16 94.33 93.99 110.20 57 ER8c ExonRegion 0 6.37 6.49 6.67 20.26 2.94 4.35 5.13 5.05 8.21 6.84 11.83 12.45 8.09 15.14 12.28 9.86 18.33 15.07 5.68 10.22 11.94 7.15 11.09 58 E8_Ac KnownBoundary 1 6.52 2.83 1.21 3.13 7.98 2.78 4.15 3.53 6.31 4.75 5.37 0.00 26.30 24.19 6.18 4.36 21.88 14.09 14.12 2.88 10.87 8.76 10.93 59 ER8d ExonRegion 0 36.65 167.17 147.70 147.43 65.84 112.89 50.73 103.40 112.98 178.08 201.46 79.91 100.42 240.34 134.57 136.11 211.57 204.91 165.10 185.42 117.64 80.69 117.66 60 E8_Db KnownBoundary 0 13.93 12.30 15.55 23.31 20.20 44.41 14.26 14.54 13.86 36.02 13.69 0.00 6.98 45.56 26.95 17.00 17.48 19.98 30.31 19.88 19.58 14.33 26.46 61 E8b_E8d KnownJunction 0 40.08 195.36 143.43 134.45 63.92 114.99 54.72 108.72 96.58 165.87 162.04 50.72 81.81 264.35 162.68 151.41 187.28 166.68 142.12 190.79 88.40 67.60 143.58 62 ER8e ExonRegion 0 23.12 20.99 16.94 36.37 16.21 15.28 16.09 14.69 25.39 26.45 24.16 9.39 13.65 53.16 23.97 37.10 28.75 32.25 24.14 27.84 18.35 14.39 20.77 63 E8_Dc KnownBoundary 0 56.31 15.52 18.27 53.94 22.92 26.52 21.82 9.82 34.55 33.23 17.16 18.76 7.79 58.27 18.42 65.54 36.75 33.74 29.93 19.69 16.19 11.21 25.78 64 E8c_E8e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER8f ExonRegion 0 43.95 23.60 12.52 32.62 23.59 17.43 13.54 11.09 24.61 29.04 18.69 10.79 17.93 57.21 24.30 36.35 32.65 22.78 26.13 20.29 16.29 10.53 18.08 66 E8_Ad KnownBoundary 0 98.98 42.10 15.23 50.34 41.77 41.11 18.24 16.92 26.10 40.86 14.21 17.56 32.79 83.47 28.80 53.23 52.92 22.97 31.25 42.19 17.17 8.70 8.54 67 ER8g ExonRegion 0 81.26 148.64 140.06 137.57 71.19 125.53 61.80 114.16 98.17 187.05 204.36 59.63 134.94 250.14 160.67 165.09 174.90 189.79 168.73 200.39 126.91 91.77 130.37 68 E8_Ae KnownBoundary 0 117.87 150.96 169.75 153.13 65.79 140.03 34.40 123.72 108.10 194.19 224.43 86.43 117.69 205.72 158.60 187.81 152.22 242.30 212.81 230.23 122.38 111.69 106.28 69 ER8h ExonRegion 0 53.95 118.16 136.88 119.21 44.24 97.07 39.69 99.48 103.22 177.33 161.87 68.53 69.55 187.57 140.93 151.33 163.29 128.12 143.75 186.96 120.45 72.21 97.66 70 E8_Dd NovelBoundary 0 3.33 6.05 4.58 8.76 0.00 4.54 0.00 4.03 4.48 12.89 9.84 0.00 0.00 6.65 8.90 0.00 8.88 13.14 17.88 17.96 14.76 8.57 3.41 71 E8d_E9a KnownJunction 0 16.45 21.05 11.09 25.54 15.62 18.80 8.08 17.62 19.99 33.74 21.53 6.30 19.48 24.31 14.71 27.86 12.72 8.33 12.05 8.50 6.30 8.08 34.66 72 E8d_E10a KnownJunction 0 44.97 80.25 122.26 110.94 35.23 85.75 35.15 81.33 87.12 147.12 113.82 43.36 53.73 163.87 92.59 89.29 124.64 88.30 89.60 142.66 84.57 54.07 58.64 73 I8 Intron 0 5.44 6.34 5.69 7.08 2.45 3.70 4.61 4.25 4.73 7.53 10.99 6.45 5.11 14.42 8.36 8.72 9.69 21.06 7.01 22.64 12.53 5.35 7.54 74 I8_SR1 SilentIntronRegion 0 5.48 6.39 5.74 7.13 2.47 3.73 4.65 4.28 4.76 7.58 11.07 6.49 5.15 14.53 8.42 8.79 9.76 21.21 7.05 22.80 12.62 5.38 7.60 75 E9_Aa NovelBoundary 0 6.89 5.85 4.17 13.55 0.00 0.00 3.93 9.41 13.51 9.62 7.05 17.56 0.00 21.07 15.95 7.69 26.65 43.11 12.80 31.77 19.71 7.72 23.22 76 ER9a ExonRegion 0 16.25 29.79 17.59 45.03 25.34 29.16 21.66 25.72 19.44 47.62 35.73 27.75 23.07 45.93 27.63 31.22 28.54 38.19 30.98 41.71 21.62 24.80 23.72 77 E9_Da NovelBoundary 0 13.78 22.56 17.42 28.00 11.63 2.27 12.45 5.26 19.42 21.30 28.06 44.71 7.30 28.72 8.90 12.48 8.70 25.37 13.65 24.35 7.48 21.98 8.28 78 I9 Intron 0 14.44 14.53 8.53 16.25 11.14 10.54 11.80 11.07 12.41 20.93 16.14 13.93 15.91 25.53 17.76 18.04 20.74 24.72 17.37 26.00 15.03 13.65 18.45 79 I9_AR1 ActiveIntronRegion 0 2.51 14.47 5.41 6.02 9.52 3.26 6.28 3.05 4.35 5.07 8.02 6.49 11.94 14.33 10.42 15.86 7.83 7.67 9.44 7.57 1.31 7.41 6.97 80 I9_SR1 SilentIntronRegion 0 19.14 25.93 10.07 26.08 15.73 10.61 18.44 14.21 13.81 19.01 16.25 21.07 12.70 21.51 20.17 17.20 19.70 19.36 19.87 26.74 11.36 12.81 15.93 81 I9_AR2 ActiveIntronRegion 0 16.92 8.95 8.56 13.50 12.44 13.91 8.87 10.81 14.26 25.77 18.86 14.82 26.82 31.75 19.14 20.19 25.66 28.15 19.43 32.51 16.75 16.57 23.09 82 I9_SR2 SilentIntronRegion 1 8.29 9.98 7.42 11.31 5.00 7.29 9.64 9.46 9.88 19.25 13.86 6.61 5.82 23.53 14.69 16.54 17.59 28.63 13.41 19.82 18.84 11.79 16.96 83 E10_Aa NovelBoundary 0 9.78 3.03 9.79 25.54 4.33 10.96 1.63 12.24 5.41 25.33 31.59 0.00 0.00 33.55 8.90 24.35 13.84 27.65 8.38 31.32 15.44 10.65 24.24 84 ER10a ExonRegion 0 8.18 17.18 15.95 15.83 5.43 11.45 5.86 11.07 12.24 23.55 18.15 7.02 9.06 24.99 13.33 12.75 17.21 22.00 16.97 24.84 16.35 11.37 11.50 85 E10_Da KnownBoundary 0 2.82 5.85 8.07 7.42 3.82 5.56 1.90 2.01 2.98 3.28 0.00 5.55 5.68 0.00 5.32 4.36 4.77 5.68 0.00 11.76 2.41 2.82 4.18 86 ER10b ExonRegion 0 24.27 25.40 32.24 31.11 10.70 11.32 9.28 10.44 6.61 17.89 9.90 5.91 5.01 10.30 14.33 7.19 9.61 11.34 8.71 16.99 6.06 9.13 6.33 87 IG12 Intergenic 0 6.29 19.41 15.49 25.50 10.33 11.05 8.37 8.52 5.08 10.80 1.89 1.50 1.80 1.81 2.90 1.01 2.66 8.53 5.14 20.13 1.96 2.56 3.99 88 IG12_SR2 SilentIntergenicRegion 0 6.39 15.96 12.32 21.08 8.86 11.27 8.06 7.75 5.05 11.55 2.05 3.15 3.09 1.95 2.57 1.22 3.21 8.91 6.98 17.95 1.87 2.88 3.69 89 IG12_AR1 ActiveIntergenicRegion 0 6.90 25.37 17.68 32.31 12.44 13.13 9.57 9.28 5.23 11.33 2.11 0.00 0.84 1.97 3.39 0.77 2.53 10.07 2.89 22.22 1.31 2.82 5.06 90 IG12_SR1 SilentIntergenicRegion 0 4.10 14.42 20.62 21.56 9.50 4.14 5.98 9.11 4.75 6.62 0.62 0.00 0.00 0.86 2.64 0.96 1.07 2.67 5.14 21.98 4.27 0.67 1.90