Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-504P24.1 Gene 0 72.38 17.25 31.26 68.77 52.10 33.39 37.25 49.34 36.51 31.97 15.74 27.06 26.71 17.71 29.65 26.89 20.75 9.38 12.32 14.44 11.82 22.81 19.07 2 449219 Transcript 0 5.25 1.72 1.44 6.10 6.94 5.95 5.37 4.66 2.10 4.03 1.77 3.89 4.79 2.12 2.58 4.28 2.35 1.36 4.07 2.14 1.64 3.94 4.60 3 332749 Transcript 0 88.69 21.25 34.02 73.11 59.47 41.02 43.46 55.51 41.98 34.30 20.57 31.16 32.09 22.77 37.45 35.85 28.55 12.38 15.11 17.85 15.80 27.10 21.92 4 ER1a ExonRegion 0 5.48 5.23 1.89 12.76 3.68 7.45 9.82 5.71 4.08 0.63 1.43 13.08 13.12 9.76 0.00 4.42 6.10 1.70 1.18 10.22 0.81 4.62 1.09 5 E1_Da NovelBoundary 0 20.23 2.50 13.16 24.57 25.47 13.97 26.10 5.09 16.61 4.65 12.58 37.36 33.44 26.02 13.60 22.99 25.99 13.35 4.24 14.25 0.00 8.33 16.30 6 E1a_E2a KnownJunction 0 0.00 0.00 1.36 0.00 3.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 Ix Intron 0 5.11 3.45 2.63 7.16 4.71 2.53 8.99 4.16 5.82 4.02 5.06 19.10 19.48 14.15 5.29 10.12 13.20 2.96 3.71 10.83 3.78 6.97 3.75 8 Ix_SR1 SilentIntronRegion 0 4.20 3.55 5.03 12.61 11.68 4.73 6.10 3.57 6.20 3.39 6.47 26.04 25.62 11.25 4.52 5.92 7.04 2.37 2.35 14.06 2.18 6.86 2.87 9 Ix_AR2 ActiveIntronRegion 0 21.83 19.79 18.23 25.98 17.85 13.03 22.15 24.96 16.46 17.38 13.99 31.56 31.32 35.32 17.11 31.25 31.74 18.30 10.03 20.71 12.30 11.91 9.49 10 Ix_SR2 SilentIntronRegion 0 5.82 3.13 1.68 7.35 4.20 1.38 10.54 3.35 5.70 2.98 4.79 19.62 25.08 15.19 4.54 10.79 17.58 1.97 3.53 12.26 4.40 8.55 3.06 11 Ix_AR3 ActiveIntronRegion 0 1.87 0.00 0.00 4.41 0.63 0.00 4.75 3.76 2.18 4.59 1.71 5.09 14.62 9.84 5.46 6.99 3.30 0.00 2.25 11.14 3.11 7.23 8.98 12 Ix_AR4 ActiveIntronRegion 0 0.97 2.32 0.20 4.94 3.01 1.89 8.97 3.07 5.82 6.87 6.07 30.53 12.67 16.78 5.69 9.14 13.48 1.93 2.45 7.10 3.09 7.70 6.12 13 Ix_SR3 SilentIntronRegion 0 3.18 0.99 1.09 3.27 2.59 1.81 7.09 1.71 3.90 1.78 4.35 14.00 15.69 11.27 4.85 6.68 8.58 2.23 3.33 8.84 2.95 5.10 4.48 14 Ix_SR4 SilentIntronRegion 0 3.48 2.28 2.17 6.27 3.63 2.80 10.14 4.52 7.25 4.93 4.46 24.61 24.38 9.53 4.85 15.08 16.39 0.75 1.66 12.23 3.49 6.52 1.03 15 ER2a ExonRegion 0 2.14 0.04 0.66 1.73 1.75 0.00 2.16 0.03 0.00 1.90 0.00 1.80 0.46 1.50 2.93 0.35 0.00 0.00 1.39 1.07 0.00 1.20 0.81 16 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 Ix Intron 0 2.57 3.05 1.96 8.40 5.72 5.49 10.58 7.71 8.53 4.02 2.48 17.63 14.21 9.23 3.70 3.82 4.00 1.51 2.73 7.89 1.10 7.73 3.56 18 Ix_AR1 ActiveIntronRegion 0 2.57 3.05 1.96 8.42 5.74 5.51 10.60 7.74 8.55 4.03 2.49 17.68 14.25 9.25 3.71 3.83 4.01 1.52 2.73 7.91 1.10 7.75 3.57 19 ER3a ExonRegion 0 7.02 2.09 1.89 7.09 11.58 9.55 7.45 8.22 3.36 6.84 2.22 2.15 1.84 1.49 2.64 5.68 3.20 1.56 6.63 1.56 3.72 4.61 9.66 20 E3a_E4b KnownJunction 0 16.89 2.96 2.87 15.05 20.80 18.68 12.81 14.01 5.15 14.83 6.95 6.30 6.82 0.00 9.89 15.21 4.77 4.89 15.25 0.00 5.31 13.23 16.05 21 I3 Intron 0 6.01 3.81 6.63 12.26 8.60 7.52 15.41 8.99 10.13 7.08 5.19 11.31 11.63 10.28 8.56 8.91 12.31 4.50 3.39 9.78 1.61 8.80 4.00 22 I3_AR2 ActiveIntronRegion 0 9.31 5.58 4.37 12.98 9.19 8.29 14.50 10.71 11.23 10.32 6.78 18.38 15.04 12.24 11.55 11.58 21.33 8.79 4.14 14.96 2.28 13.03 4.88 23 I3_SR2 SilentIntronRegion 0 7.27 4.40 10.74 16.72 10.66 10.19 19.54 10.11 13.06 8.31 6.84 10.02 10.72 10.87 8.17 11.45 10.82 5.46 4.49 10.19 2.49 9.70 3.71 24 I3_AR4 ActiveIntronRegion 0 4.60 2.60 7.92 14.44 10.91 7.20 19.58 11.61 12.08 6.94 3.95 13.62 17.65 12.41 9.77 7.92 12.00 1.43 2.57 9.77 0.10 9.06 6.09 25 I3_AR7 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.35 10.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E4_Aa NovelBoundary 0 43.56 2.63 39.18 81.18 31.24 29.93 27.38 37.66 47.71 42.15 31.32 37.81 19.48 38.26 45.00 41.53 37.68 15.17 43.86 36.37 14.70 78.44 30.22 27 ER4a ExonRegion 0 39.33 13.82 19.79 41.29 35.00 33.43 35.29 29.31 32.22 21.19 21.23 15.71 18.98 26.47 28.48 37.67 35.87 13.39 15.67 16.03 17.84 17.40 15.99 28 E4_Ab KnownBoundary 0 29.93 3.29 19.63 44.28 42.95 11.30 32.68 22.67 16.96 20.93 18.69 30.61 8.28 30.67 29.30 29.56 8.98 7.17 13.65 6.20 2.59 22.04 40.04 29 ER4b ExonRegion 0 34.30 9.77 37.96 85.61 48.52 23.95 35.96 47.27 40.22 40.31 11.42 19.02 15.60 13.79 19.13 15.88 13.13 6.42 10.74 9.22 7.81 16.85 17.72 30 E4_Da KnownBoundary 0 33.64 12.50 20.67 41.95 39.05 30.49 35.11 15.40 24.83 24.87 4.69 6.30 19.64 0.00 0.00 0.00 4.77 1.74 0.00 2.68 3.15 0.00 4.10 31 ER4c ExonRegion 0 138.05 28.69 48.25 104.94 83.93 48.62 51.64 81.70 51.73 47.41 19.92 46.60 45.20 19.07 46.43 34.04 21.23 11.37 14.55 19.66 13.76 36.80 27.84