Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARV1 Gene 0 96.15 78.60 75.65 87.88 84.06 74.03 54.37 59.70 52.91 67.55 45.99 84.45 102.02 92.53 107.75 77.66 79.98 34.60 39.24 70.88 26.63 51.13 34.44 2 497753 Transcript 0 1.07 1.45 0.44 1.69 1.54 3.15 2.10 0.91 1.73 1.80 1.49 0.99 0.27 1.89 2.50 3.41 2.37 2.60 1.35 3.47 1.74 0.30 1.25 3 310256 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 366658 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 4.84 0.00 0.00 0.00 0.00 0.00 3.74 5.14 0.00 0.00 0.00 0.00 0.00 5 480519 Transcript 0 8.98 1.03 1.90 1.85 23.52 13.17 9.59 4.04 0.88 2.32 0.95 1.42 6.08 1.73 4.01 1.53 2.71 3.75 1.27 2.78 1.24 0.62 3.83 6 450711 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 435927 Transcript 0 4.06 9.06 3.43 5.74 9.26 5.19 5.25 5.87 4.57 4.09 1.76 11.27 6.40 13.10 13.70 7.22 17.28 6.76 9.02 3.70 4.65 9.03 4.04 8 459891 Transcript 0 3.48 0.00 5.17 12.22 8.66 2.21 0.00 6.78 0.00 4.46 0.00 0.00 0.00 7.77 4.33 4.36 4.77 0.00 13.08 0.00 3.15 11.08 0.00 9 ER1a ExonRegion 0 0.06 0.00 0.00 0.00 1.20 1.65 0.69 0.00 1.11 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 4.16 5.79 4.24 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 0 4.09 0.77 2.18 0.00 2.56 3.10 4.62 0.00 0.38 0.00 3.01 0.00 0.00 5.63 1.61 1.39 5.35 1.11 2.12 2.17 0.49 1.30 1.11 12 E1_Ac KnownBoundary 0 0.00 9.08 3.52 0.00 19.10 0.00 4.24 0.00 0.00 0.00 2.21 0.00 0.00 12.30 0.00 3.67 3.65 3.86 4.80 8.63 0.00 2.88 3.84 13 E1_Ad KnownBoundary 0 11.19 3.16 1.77 0.00 4.07 11.07 4.42 0.00 0.00 1.18 7.79 0.00 0.00 0.00 0.00 4.27 4.39 0.00 0.00 3.20 0.00 0.00 0.00 14 E1_Ae KnownBoundary 0 20.45 12.04 0.00 0.00 3.99 5.00 8.17 0.00 0.00 0.00 4.74 0.00 6.66 5.00 19.78 7.60 24.40 0.00 0.00 3.07 2.90 11.08 7.60 15 ER1c ExonRegion 0 9.34 4.07 2.45 0.00 8.03 5.50 10.98 0.00 0.00 0.00 10.69 0.00 1.66 17.67 35.50 8.04 14.76 3.70 3.19 5.88 2.20 5.64 4.49 16 ER1d ExonRegion 1 13.12 8.95 2.45 0.00 11.77 8.44 12.18 0.00 0.00 0.00 11.60 0.00 5.63 20.79 57.44 8.92 23.11 3.70 3.82 6.81 2.64 7.08 7.05 17 E1_Af KnownBoundary 0 159.07 101.56 23.09 18.91 79.03 110.33 47.21 16.59 7.12 30.68 21.64 0.00 26.13 30.90 87.77 147.57 73.02 54.30 97.32 66.35 41.89 38.70 75.46 18 ER1e ExonRegion 1 67.73 50.84 12.34 5.59 37.01 51.65 28.82 5.76 2.80 15.02 15.01 0.14 17.67 25.12 77.46 80.64 55.68 18.60 35.68 35.74 20.64 23.47 39.74 19 ER1f ExonRegion 0 45.54 50.53 23.30 25.86 27.17 75.82 36.26 14.90 20.24 46.01 27.18 21.88 37.05 53.52 57.71 80.54 68.81 18.51 43.96 46.05 32.47 23.32 27.18 20 E1_Da KnownBoundary 1 25.78 28.02 35.63 31.73 15.70 22.88 4.02 21.93 24.57 38.52 67.81 50.87 6.82 32.14 36.84 7.52 117.81 3.23 4.33 49.54 69.50 11.27 0.00 21 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 22 E1_Db KnownBoundary 0 0.00 0.00 1.24 1.50 0.00 0.00 0.00 0.00 4.75 3.17 0.00 0.00 0.00 2.47 9.27 3.93 17.20 4.02 0.00 15.28 5.81 0.00 0.00 23 E1b_E2a KnownJunction 1 24.60 24.01 44.32 63.96 22.75 7.27 6.62 41.36 46.96 75.46 98.24 24.01 20.94 90.94 87.03 47.34 247.69 28.77 33.51 114.28 109.84 54.68 11.78 24 E1b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 4.84 0.00 0.00 0.00 0.00 0.00 3.74 5.14 0.00 0.00 0.00 0.00 0.00 25 ER1g ExonRegion 1 21.17 27.50 42.67 50.72 18.96 13.87 6.97 33.52 43.28 64.23 88.41 34.82 19.37 70.97 62.31 29.72 199.78 20.97 23.27 97.13 102.62 36.42 8.17 26 ER1h ExonRegion 0 3.15 4.36 1.31 3.80 3.41 7.79 5.62 2.73 4.07 3.89 4.47 2.96 0.82 4.68 7.51 10.24 7.12 7.81 4.06 7.16 2.26 0.89 3.74 27 E1c_E2a KnownJunction 0 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 2.97 0.00 0.00 28 ER2a ExonRegion 0 49.10 66.89 88.06 98.11 91.87 57.17 50.19 73.65 71.57 91.57 68.91 66.57 124.09 180.94 169.72 216.20 126.26 115.55 100.31 139.18 39.34 100.72 84.36 29 E2a_E3a KnownJunction 0 140.10 121.95 89.65 108.51 294.23 122.20 154.04 59.56 73.21 85.66 52.38 125.89 156.81 92.77 142.90 85.79 111.17 52.85 32.75 74.02 21.75 72.19 31.93 30 E3_Aa NovelBoundary 0 3.63 0.00 1.60 5.26 16.04 42.87 1.99 10.47 1.30 8.00 0.00 0.00 0.00 2.47 0.00 0.00 4.02 0.00 0.00 5.94 0.00 6.25 0.00 31 ER3a ExonRegion 0 124.28 162.92 112.18 113.07 106.09 131.88 102.48 91.62 75.42 93.38 66.47 124.35 125.23 140.22 142.05 98.43 117.27 53.51 38.72 98.91 33.23 73.44 32.82 32 E3a_E4a KnownJunction 0 0.00 9.67 0.00 1.73 0.00 0.00 0.00 6.16 1.65 2.71 0.00 0.00 0.00 4.71 9.64 4.36 9.07 6.88 0.00 0.00 3.09 3.12 0.00 33 E3a_E5a KnownJunction 0 223.67 150.37 110.91 139.91 105.60 75.41 53.57 114.06 80.18 127.65 83.76 113.14 163.14 166.70 200.63 106.90 143.90 44.94 34.73 83.41 53.75 81.87 34.32 34 E4_Aa NovelBoundary 0 502.98 519.78 635.81 832.56 328.52 247.13 655.29 830.27 672.42 786.57 146.30 144.05 184.89 115.60 257.37 448.77 373.63 899.66 400.01 642.37 274.23 222.95 406.07 35 ER4a ExonRegion 1 5.73 9.49 3.90 6.77 14.78 10.80 10.42 6.72 7.71 5.53 3.16 33.80 19.19 29.81 27.02 13.63 26.14 13.40 18.69 11.09 10.86 21.21 12.13 36 E4a_E5a KnownJunction 0 6.45 8.02 6.39 8.72 12.99 4.77 5.34 4.72 4.34 4.03 2.11 0.00 0.00 4.77 4.45 3.67 16.64 0.00 8.38 0.00 0.00 2.76 0.00 37 I4_AR1 ActiveIntronRegion 0 9.13 2.12 3.80 8.45 21.88 12.27 9.06 9.96 6.29 10.42 2.30 5.34 11.40 2.76 2.18 0.88 4.42 1.09 0.00 5.69 0.00 3.10 1.75 38 E5_Aa NovelBoundary 0 6.22 3.29 3.19 13.38 3.82 18.40 10.33 21.15 6.08 11.36 0.00 12.60 6.82 4.36 9.89 0.00 13.65 4.31 19.20 6.52 0.00 3.12 8.11 39 ER5a ExonRegion 0 241.43 167.81 138.37 165.28 158.71 147.73 106.58 121.48 92.75 138.89 85.17 145.68 155.06 177.84 185.37 138.65 132.14 69.20 58.75 114.62 45.83 93.24 62.82 40 E5_Da NovelBoundary 0 20.89 2.63 13.07 17.55 25.98 21.69 7.51 8.34 7.78 9.59 0.00 6.30 0.00 4.59 6.30 0.00 8.23 3.36 0.00 12.21 0.00 8.63 15.79 41 E5a_E6a KnownJunction 0 371.10 334.48 178.91 201.44 208.66 160.19 128.16 109.05 110.42 137.83 132.19 120.04 206.48 194.60 212.87 156.88 131.56 51.57 59.11 155.00 57.27 95.95 68.55 42 I5_AR2 ActiveIntronRegion 0 22.82 7.85 8.98 15.12 20.30 11.42 15.45 16.46 7.60 11.76 3.35 11.36 13.00 7.31 7.79 7.52 10.55 5.00 1.70 12.47 1.47 3.56 4.30 43 E6_Aa NovelBoundary 0 44.08 11.97 5.09 18.88 25.13 20.90 12.28 6.74 10.01 17.19 5.37 24.31 38.80 9.54 15.58 4.10 13.09 7.25 4.80 12.21 3.15 0.00 4.01 44 ER6a ExonRegion 0 233.56 264.54 146.68 181.78 203.28 179.01 109.54 100.86 110.36 128.99 106.20 108.36 184.70 182.71 213.16 138.47 137.38 55.70 67.55 122.90 55.74 87.63 73.85 45 E6_Da KnownBoundary 0 192.40 257.59 124.57 189.42 217.83 211.98 124.58 105.11 112.53 118.46 69.97 140.90 199.18 181.29 198.78 114.07 157.08 61.43 87.91 117.22 68.70 79.30 80.24 46 ER6b ExonRegion 0 156.42 170.78 151.11 164.80 162.75 185.55 112.09 102.91 105.60 129.27 87.27 177.62 272.56 177.36 198.18 132.72 154.18 58.96 81.78 122.76 53.38 89.35 75.47 47 E6b_E7a KnownJunction 0 13.11 9.01 3.37 3.40 12.39 2.44 5.79 6.41 6.83 5.56 2.47 6.15 7.30 7.30 8.90 3.85 4.77 4.39 22.49 11.63 5.56 5.63 0.00 48 E6b_E8a KnownJunction 1 113.13 98.86 191.30 189.25 158.91 148.38 118.49 110.45 109.34 112.04 99.03 168.65 432.44 231.15 266.27 168.25 143.52 35.73 135.72 166.57 33.05 110.65 67.61 49 I6 Intron 0 16.97 5.20 8.84 13.91 18.53 16.07 12.19 14.64 9.09 11.28 4.80 6.23 15.61 9.07 9.27 12.17 9.91 12.84 4.11 10.98 3.88 3.31 8.89 50 I6_AR1 ActiveIntronRegion 0 12.87 4.68 0.23 14.62 20.30 15.37 12.17 15.28 9.90 14.94 5.65 5.40 19.89 6.94 9.53 15.89 18.69 13.09 5.03 9.68 2.54 6.08 6.18 51 I6_SR1 SilentIntronRegion 0 14.04 6.56 7.18 15.07 17.56 17.80 11.76 13.91 10.51 11.18 3.25 5.40 10.21 10.03 6.04 8.45 9.39 10.76 5.58 11.82 3.96 4.80 6.74 52 I6_AR2 ActiveIntronRegion 0 16.90 4.27 9.57 12.88 17.06 15.86 11.65 13.29 7.75 10.66 5.10 6.28 16.11 9.38 10.51 12.16 9.43 12.93 4.00 10.70 4.09 2.54 9.81 53 I6_SR2 SilentIntronRegion 0 7.14 4.83 22.52 15.50 10.03 16.50 15.89 29.60 15.13 19.35 3.87 9.74 14.07 7.92 7.98 20.80 11.55 11.32 3.19 10.37 0.00 5.73 10.28 54 I6_AR3 ActiveIntronRegion 0 25.15 8.71 12.00 17.63 28.18 14.88 16.06 23.00 13.96 12.73 5.18 7.67 19.37 7.08 7.40 16.11 8.43 15.77 1.82 12.13 3.51 3.65 8.74 55 E7_Aa NovelBoundary 0 33.41 0.00 7.54 16.51 16.13 10.79 20.36 27.40 5.38 4.14 4.74 6.15 13.15 7.12 13.60 4.36 20.20 10.07 0.00 18.28 0.00 3.12 0.00 56 ER7a ExonRegion 0 31.61 13.28 14.21 21.33 37.49 13.21 15.74 19.60 12.77 18.54 9.89 11.01 17.87 9.41 11.36 21.34 20.38 17.57 14.22 15.21 13.63 8.51 11.34 57 E7_Da KnownBoundary 0 17.11 3.09 2.99 6.53 7.47 2.56 4.15 6.20 3.36 4.08 4.11 0.00 0.00 5.42 4.45 4.36 3.74 6.67 0.00 2.43 2.97 2.94 0.00 58 E7a_E8a KnownJunction 0 3.48 0.00 5.17 12.22 8.66 2.21 0.00 6.78 0.00 4.46 0.00 0.00 0.00 7.77 4.33 4.36 4.77 0.00 13.08 0.00 3.15 11.08 0.00 59 E7_Db KnownBoundary 0 12.30 0.00 4.67 2.70 29.80 36.17 17.00 11.99 0.00 1.26 0.00 0.00 6.82 2.41 4.45 0.00 3.55 5.72 0.00 2.75 2.90 0.00 0.00 60 ER7b ExonRegion 0 29.63 2.03 6.13 10.90 52.18 44.01 25.16 13.83 4.94 10.32 3.87 0.00 4.69 6.50 8.70 5.94 9.90 11.09 0.00 8.51 6.61 6.25 11.75 61 ER7c ExonRegion 0 17.96 2.07 3.79 3.71 47.03 26.33 19.18 8.08 1.76 4.64 1.90 2.84 12.16 3.45 8.02 3.06 5.42 5.31 2.54 5.55 2.48 1.24 7.66 62 E7_Dc NovelBoundary 0 77.27 13.62 13.28 28.97 16.55 32.82 28.31 27.89 6.60 21.25 9.79 6.30 0.00 4.53 4.45 15.98 3.55 6.96 4.80 12.85 3.15 8.82 7.94 63 I7 Intron 0 24.09 6.23 5.21 8.89 19.91 11.24 11.30 10.71 4.43 5.24 5.08 4.74 14.61 8.39 5.08 3.90 8.67 4.62 2.09 0.93 4.34 3.65 7.07 64 I7_SR1 SilentIntronRegion 0 31.18 8.89 4.15 10.89 26.62 14.28 11.20 16.02 4.78 7.74 7.18 8.01 10.33 10.25 5.68 1.61 11.31 6.35 1.56 1.65 4.78 4.23 10.06 65 I7_AR2 ActiveIntronRegion 0 29.77 6.85 9.15 11.63 23.75 14.18 17.56 11.00 6.48 5.48 5.65 3.90 24.86 7.33 4.90 8.42 10.64 5.34 3.79 0.69 6.24 5.02 7.80 66 E8_Aa NovelBoundary 0 11.34 0.00 21.41 20.74 27.59 10.22 22.96 15.69 7.73 16.98 7.37 0.00 27.27 16.83 23.73 8.63 7.95 7.59 23.25 23.01 3.15 17.64 20.06 67 ER8a ExonRegion 0 152.72 97.47 134.73 160.69 134.54 91.62 73.95 98.99 89.15 101.53 67.93 163.13 186.40 129.44 179.90 92.27 111.64 27.52 50.39 110.38 30.53 78.41 41.31 68 IG46_AR3 ActiveIntergenicRegion 0 4.70 0.18 1.92 4.14 8.68 10.78 4.87 7.84 1.82 2.91 0.00 2.19 0.00 0.64 0.00 0.00 0.00 3.19 1.40 0.37 4.63 8.48 10.45 69 IG46_SR4 SilentIntergenicRegion 0 2.35 1.41 2.03 2.54 8.92 15.54 5.88 5.37 2.56 3.56 0.00 1.98 0.00 0.74 0.00 0.00 0.00 2.43 0.89 0.30 2.76 5.79 13.06 70 IG46_AR4 ActiveIntergenicRegion 0 3.27 2.10 1.41 4.19 12.41 11.81 5.12 5.31 1.90 2.20 0.00 0.92 0.00 0.64 0.00 0.00 0.00 2.13 0.00 0.00 0.57 9.66 9.83