Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TRIM17 Gene 0 8.76 5.24 29.57 40.23 10.59 46.63 16.16 12.28 17.44 35.68 1.98 4.45 5.11 4.47 7.75 7.99 3.71 23.26 11.38 30.70 10.60 4.39 11.07 2 456946 Transcript 0 0.66 4.62 13.72 20.58 6.55 45.45 9.54 4.23 6.55 14.78 0.45 0.78 2.43 1.69 5.57 2.41 0.61 10.17 9.51 13.85 5.32 1.62 4.17 3 431483 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 457345 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 355586 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 295033 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 479800 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 366698 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 366697 Transcript 0 13.18 5.54 13.09 12.89 10.20 8.06 10.98 14.53 12.89 17.79 1.77 3.79 12.67 4.74 9.72 11.34 4.46 19.27 14.88 28.73 13.26 1.04 14.44 10 492241 Transcript 0 1.92 5.02 2.91 5.41 0.84 4.53 1.41 1.51 2.89 5.81 1.39 1.62 1.76 1.32 6.35 4.18 1.75 9.07 2.69 2.59 2.13 0.26 0.73 11 ER1a ExonRegion 0 0.34 0.00 2.06 1.05 0.00 3.83 0.25 0.09 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.36 0.00 0.93 0.51 0.00 0.68 12 E1_Ab KnownBoundary 0 3.56 0.00 7.24 2.06 3.31 22.26 1.81 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.73 0.00 5.88 0.00 0.00 0.00 13 E1_Ac KnownBoundary 0 0.00 0.00 1.83 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 14 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 15 ER1b ExonRegion 0 2.12 0.00 7.35 4.09 0.00 12.50 1.08 1.89 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.02 0.00 8.12 0.00 0.00 0.00 16 ER1c ExonRegion 0 1.51 0.00 7.35 4.09 0.00 11.26 0.00 3.46 0.00 4.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 6.38 0.00 0.00 0.00 17 ER1d ExonRegion 0 0.93 0.97 5.08 2.33 0.00 6.29 0.64 2.15 2.53 3.79 0.00 0.00 0.00 0.64 0.98 0.00 0.00 2.33 3.04 2.57 0.00 0.00 1.40 18 E1_Da KnownBoundary 0 0.00 0.00 1.15 2.06 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.11 0.00 0.00 0.00 19 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.01 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E1a_E2c KnownJunction 0 0.00 0.00 3.10 1.50 0.00 2.90 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E1a_E2d KnownJunction 0 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 22 ER1e ExonRegion 0 0.06 0.68 7.63 3.75 1.02 10.85 1.47 1.73 2.47 7.54 0.65 0.00 0.06 1.28 0.69 0.04 0.00 5.01 2.14 6.44 3.41 0.00 0.00 23 E1_Db NovelBoundary 0 6.45 9.54 2.84 1.70 0.00 21.07 1.81 2.05 0.00 2.66 0.00 0.00 0.00 2.47 0.00 12.22 0.00 4.48 3.58 3.20 5.99 0.00 7.51 24 E1b_E2c KnownJunction 0 0.00 0.00 6.68 0.00 3.23 7.21 2.12 0.00 0.00 7.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 2.49 5.62 0.00 3.16 25 E2_Aa NovelBoundary 0 6.08 3.35 15.46 6.76 0.00 5.28 1.90 4.23 5.87 7.52 0.00 5.55 0.00 0.00 14.09 7.86 0.00 12.93 9.32 8.82 5.62 0.00 3.93 26 ER2a ExonRegion 0 13.18 5.54 13.09 12.89 10.20 8.06 10.98 14.53 12.89 17.79 1.77 3.79 12.67 4.74 9.72 11.34 4.46 19.27 14.88 28.73 13.26 1.04 14.44 27 E2_Ab KnownBoundary 0 10.52 0.00 27.44 12.42 4.33 8.18 8.35 15.12 12.21 19.37 4.63 12.15 0.00 4.94 4.45 16.92 0.00 20.02 3.48 26.33 8.71 0.00 4.35 28 ER2b ExonRegion 0 5.53 0.00 24.68 15.75 4.39 16.56 3.79 19.11 13.86 24.53 1.45 5.89 0.13 4.92 6.53 8.67 8.16 18.73 3.01 24.53 9.24 0.00 5.71 29 E2_Ac KnownBoundary 0 7.11 0.00 9.73 18.85 4.33 27.77 0.00 27.85 11.98 21.97 0.00 0.00 0.00 2.47 8.90 3.93 8.04 15.01 4.33 21.22 8.15 0.00 11.69 30 ER2c ExonRegion 0 9.01 4.72 33.62 29.91 7.89 28.35 5.58 19.57 25.46 34.19 2.50 4.66 5.41 2.64 3.72 4.42 4.23 30.51 1.59 43.15 11.44 1.47 9.30 31 E2_Ad KnownBoundary 0 21.04 14.41 34.27 48.78 7.47 44.46 5.79 16.27 33.16 38.65 5.00 0.00 0.00 2.47 9.52 0.00 4.02 31.71 4.61 54.20 9.14 2.27 14.34 32 ER2d ExonRegion 0 7.63 2.73 38.67 39.72 6.52 40.15 13.93 11.15 20.44 44.07 1.39 1.54 1.11 3.55 3.37 3.84 1.42 20.53 3.48 35.65 9.65 6.01 10.56 33 E2_Da NovelBoundary 0 6.30 5.85 6.89 9.62 0.00 0.00 14.62 3.74 4.80 7.28 2.47 0.00 20.13 2.12 14.22 0.00 0.00 17.24 7.62 11.38 8.53 0.00 4.35 34 E2a_E3b KnownJunction 0 3.56 6.64 42.87 37.06 3.65 66.67 9.01 2.42 16.90 48.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.16 0.00 26.40 2.59 11.45 11.87 35 E3_Aa NovelBoundary 0 6.67 2.89 19.96 25.60 12.82 5.22 12.50 13.92 6.05 13.43 0.00 12.60 14.12 0.00 0.00 12.13 18.51 28.64 11.39 17.07 8.34 0.00 0.00 36 E3_Ab NovelBoundary 0 10.15 15.98 16.56 12.09 0.00 12.04 4.37 8.67 11.43 17.49 4.90 6.30 13.31 2.47 24.60 8.63 4.21 24.79 8.56 11.06 8.96 3.00 3.93 37 ER3a ExonRegion 0 1.92 5.02 2.91 5.41 0.84 4.53 1.41 1.51 2.89 5.81 1.39 1.62 1.76 1.32 6.35 4.18 1.75 9.07 2.69 2.59 2.13 0.26 0.73 38 ER3b ExonRegion 0 6.88 7.15 29.46 46.63 16.56 65.42 22.63 6.31 20.39 51.62 2.65 20.46 10.66 2.41 7.70 13.23 8.27 37.73 8.45 38.23 10.79 3.14 9.86 39 E3_Da NovelBoundary 0 10.30 8.49 26.58 21.11 7.39 8.06 0.00 7.72 4.75 24.61 0.00 6.30 6.82 7.06 10.01 8.12 4.68 24.58 7.62 24.10 25.39 5.51 12.72 40 E3a_E4a KnownJunction 0 0.00 0.00 22.97 25.84 11.21 57.01 9.63 2.55 12.99 26.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.42 7.91 23.46 2.53 0.00 4.35 41 I3 Intron 0 18.95 8.87 8.11 16.92 10.42 7.14 7.63 15.64 10.03 17.03 4.52 6.62 8.51 7.00 9.78 18.29 6.17 18.38 13.89 15.57 8.75 2.27 12.35 42 I3_AR1 ActiveIntronRegion 0 4.54 6.55 6.86 3.27 8.62 0.00 5.67 8.24 2.96 3.67 1.04 7.38 13.33 1.44 0.00 9.57 0.00 7.90 6.84 9.12 9.46 1.12 4.73 43 I3_SR1 SilentIntronRegion 0 21.47 9.29 8.35 19.31 10.76 8.38 7.99 16.95 11.27 19.37 5.12 6.52 7.72 7.97 11.48 19.84 7.24 20.23 15.14 16.72 8.66 2.48 13.69 44 E4_Aa NovelBoundary 0 18.52 3.09 27.38 21.94 16.47 2.90 7.95 15.24 13.45 21.87 2.16 13.95 12.82 9.42 14.71 8.54 9.54 54.88 13.27 31.58 14.15 0.00 18.44 45 ER4a ExonRegion 0 13.05 4.46 40.03 56.93 14.29 59.22 18.09 16.48 19.84 54.96 3.41 3.22 3.41 8.49 10.61 13.01 4.37 33.04 13.64 31.40 10.41 9.49 14.33 46 E4_Da NovelBoundary 0 27.19 0.00 7.24 8.46 0.00 7.50 2.21 19.02 7.29 11.87 4.11 11.85 0.00 2.47 28.56 12.56 4.30 38.51 0.00 7.67 11.49 0.00 8.11 47 E4a_E5a KnownJunction 0 0.00 6.51 31.61 58.80 0.00 45.14 12.54 9.69 26.39 33.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.57 4.14 19.88 3.15 14.39 15.96 48 I4 Intron 0 16.86 2.53 3.34 8.01 4.11 4.42 7.74 3.58 7.13 5.37 2.68 3.96 4.84 5.35 7.00 13.25 4.58 13.23 8.38 11.66 6.28 2.44 9.66 49 I4_SR1 SilentIntronRegion 0 16.91 2.53 3.35 8.04 4.12 4.43 7.76 3.59 7.15 5.39 2.69 3.97 4.85 5.37 7.02 13.28 4.60 13.27 8.40 11.69 6.30 2.44 9.68 50 Ix Intron 0 2.33 1.68 2.52 2.24 3.69 1.52 2.19 4.26 4.06 8.01 4.80 0.00 0.00 4.00 3.62 6.55 2.73 11.39 5.27 9.97 9.72 1.15 7.29 51 Ix_SR1 SilentIntronRegion 0 2.36 1.69 2.54 2.26 3.73 1.53 2.21 4.31 4.10 8.08 4.85 0.00 0.00 4.05 3.66 6.63 2.76 11.50 5.31 10.07 9.83 1.16 7.37 52 E5a_E6a KnownJunction 0 0.00 2.89 37.67 62.30 23.51 79.16 18.46 4.35 9.66 47.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.08 13.37 9.27 0.00 5.51 0.00 53 ER5a ExonRegion 0 0.46 3.89 45.76 71.17 12.56 59.08 14.51 9.54 24.06 55.35 0.00 0.00 0.00 0.28 0.00 0.26 0.00 35.35 10.39 17.30 2.49 11.41 10.73 54 E6_Aa NovelBoundary 0 0.00 0.00 7.98 10.82 0.00 27.43 10.25 7.60 2.72 15.66 0.00 7.65 8.28 2.47 5.19 0.00 4.77 6.80 21.18 9.59 16.74 0.00 16.65 55 ER6a ExonRegion 0 4.70 6.20 43.14 64.54 22.74 99.40 22.63 12.40 24.00 55.32 0.71 6.95 1.89 6.09 6.75 8.57 5.74 39.37 18.71 30.99 14.68 9.76 17.03 56 E6_Da KnownBoundary 0 10.67 9.08 37.91 59.83 26.83 94.83 20.09 13.92 41.43 63.56 2.32 0.00 0.00 2.47 13.35 16.49 8.42 41.87 20.71 20.20 16.37 14.21 48.74 57 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E6a_E7b KnownJunction 0 0.00 0.00 6.80 5.93 3.14 13.97 1.90 1.93 5.61 2.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 2.99 59 ER6b ExonRegion 0 5.74 7.47 47.62 86.90 12.66 105.64 23.17 17.41 29.16 66.60 1.45 11.62 4.84 7.12 12.28 11.54 7.68 27.88 22.33 35.23 15.77 7.47 14.66 60 E6_Db KnownBoundary 0 6.82 15.19 70.34 110.71 23.43 120.78 39.75 26.16 36.14 69.68 2.68 0.00 0.00 4.94 9.77 16.49 7.95 43.90 24.85 59.00 20.70 3.12 18.35 61 ER6c ExonRegion 0 1.93 13.19 26.85 57.99 15.40 118.30 25.04 10.97 17.18 29.30 0.69 2.33 7.22 3.79 16.03 7.20 1.82 23.93 26.38 32.62 6.92 4.86 9.34 62 E6_Dc NovelBoundary 0 0.00 11.45 31.93 44.42 8.32 59.91 29.68 19.80 9.23 27.18 2.63 0.00 7.47 2.47 4.45 7.52 9.16 21.39 13.65 21.22 15.26 3.12 8.37 63 E7_Ab NovelBoundary 0 0.00 3.29 17.30 21.08 0.00 33.16 13.56 1.77 8.56 12.57 0.00 0.00 0.00 0.00 9.77 0.00 0.00 8.46 0.00 5.62 2.41 2.51 0.00 64 ER7a ExonRegion 0 0.00 0.00 7.35 7.27 3.57 18.95 3.97 2.88 4.53 5.73 0.00 0.00 0.00 3.25 5.80 0.00 0.00 1.85 0.00 4.26 4.41 4.17 0.98 65 ER7b ExonRegion 0 11.37 7.50 48.30 68.38 15.34 79.01 28.86 14.16 24.47 51.77 3.62 4.90 2.09 5.29 9.38 8.17 3.51 33.10 11.75 45.06 12.08 7.31 11.96