Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf96 Gene 0 39.47 164.14 65.16 93.43 86.70 212.98 98.84 104.12 76.14 52.02 12.89 39.24 76.45 184.89 33.56 43.07 113.01 69.77 39.57 106.69 6.41 18.50 11.13 2 483092 Transcript 0 3.87 5.15 3.65 5.07 9.49 6.89 7.79 5.75 7.94 3.71 0.51 0.69 10.96 17.24 4.22 7.18 11.83 4.81 5.15 10.24 1.07 1.58 1.76 3 284617 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 452552 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 366687 Transcript 0 5.50 13.83 1.72 4.36 11.77 7.34 6.36 2.42 3.71 1.15 0.00 0.00 0.94 9.10 7.54 0.00 6.60 3.33 0.00 0.00 0.00 0.00 0.00 6 366686 Transcript 0 3.72 4.91 4.81 6.66 5.01 3.42 5.37 11.52 8.65 2.43 0.22 1.17 10.94 7.10 6.16 6.18 6.87 5.24 4.88 8.62 0.00 0.68 0.96 7 ER1a ExonRegion 0 0.00 0.34 0.29 0.00 0.00 0.67 0.44 0.00 0.54 1.30 0.57 0.59 0.00 3.95 0.34 0.90 6.40 0.76 1.06 1.05 0.34 0.75 0.21 8 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 5.79 0.00 2.01 1.45 5.86 2.26 0.00 0.00 10.12 0.00 3.50 7.57 3.98 0.00 0.00 0.00 2.33 4.01 9 ER1b ExonRegion 0 0.00 0.00 0.61 0.00 0.00 2.20 0.00 0.00 1.53 1.61 0.28 0.00 0.00 3.25 0.00 0.35 2.87 0.88 0.00 0.03 0.12 1.18 1.12 10 E1a_E2b KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 0.00 11 E2_Aa NovelBoundary 0 0.00 6.64 1.39 3.96 0.00 5.45 0.00 2.30 3.47 2.77 2.00 0.00 0.00 12.42 4.45 37.68 42.08 65.99 4.80 12.85 0.00 3.12 0.00 12 ER2a ExonRegion 0 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.66 0.37 0.00 0.00 0.00 0.00 0.00 13 ER2b ExonRegion 0 0.40 6.29 1.40 1.17 0.45 15.57 2.81 2.01 2.46 2.74 0.75 1.69 3.12 31.87 0.92 5.15 16.53 13.39 6.28 10.45 1.75 1.09 0.72 14 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 3.93 0.00 0.00 0.00 3.26 0.00 0.00 0.00 15 E2a_E4b KnownJunction 1 3.19 45.39 11.56 10.85 4.07 115.27 20.01 25.84 26.91 26.57 14.95 0.00 12.99 95.77 0.00 19.99 138.20 106.99 34.17 67.88 20.32 5.51 4.01 16 ER3a ExonRegion 0 7.43 9.81 9.62 13.32 6.45 6.83 10.73 23.04 17.30 4.86 0.43 2.34 21.88 14.21 12.31 12.36 13.74 10.48 9.76 17.25 0.00 1.37 1.93 17 E3_Da NovelBoundary 0 0.00 3.35 18.78 36.16 25.13 0.00 12.06 34.13 32.20 3.30 0.00 5.40 20.29 19.84 4.57 10.34 17.30 8.37 0.00 22.43 3.09 0.00 4.35 18 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 I3 Intron 0 7.07 7.17 8.22 11.16 8.24 5.45 10.20 11.64 10.08 5.18 1.02 3.74 18.26 16.28 7.10 11.31 14.76 10.60 8.68 12.71 1.40 1.39 3.59 20 I3_AR1 ActiveIntronRegion 1 5.96 11.46 12.09 17.17 8.67 4.13 16.23 23.58 16.85 2.65 0.27 3.62 36.11 11.97 10.51 10.89 14.42 7.39 11.22 21.28 0.93 1.18 5.38 21 I3_AR2 ActiveIntronRegion 0 14.70 14.46 17.68 25.26 18.66 7.69 13.72 18.60 18.89 8.93 0.42 10.18 33.75 17.75 10.85 16.65 16.52 11.68 12.04 22.91 2.28 2.58 6.28 22 I3_SR2 SilentIntronRegion 0 7.23 5.96 7.55 10.59 7.62 6.73 10.08 11.01 10.05 6.51 1.63 3.63 14.61 21.71 7.07 13.65 18.44 14.80 9.22 11.51 1.84 1.54 3.81 23 ER4a ExonRegion 0 0.00 5.57 2.72 1.84 0.00 4.07 3.11 2.03 3.17 0.00 0.00 0.00 8.77 8.12 2.27 6.07 3.30 0.96 0.00 2.13 0.00 0.00 0.00 24 ER4b ExonRegion 1 7.74 9.95 7.00 10.14 18.97 13.11 15.14 11.51 15.35 6.12 0.46 0.79 21.93 30.53 8.10 13.46 17.26 8.86 9.25 19.43 1.81 2.41 3.30 25 E4_Ab KnownBoundary 0 26.38 17.50 6.36 9.32 31.07 37.76 52.16 19.30 18.69 7.92 4.79 6.30 26.30 46.68 8.90 4.02 42.08 10.69 9.60 11.89 5.87 0.00 7.51 26 ER4c ExonRegion 1 15.74 69.74 33.45 45.06 49.71 156.71 59.91 69.88 75.98 51.39 21.41 35.18 107.10 330.62 23.07 78.37 231.86 218.99 57.37 152.87 25.49 8.55 12.92 27 E4b_E5a KnownJunction 1 3.78 146.62 18.98 55.57 69.52 236.34 72.43 79.85 89.09 58.59 19.11 30.01 181.64 409.44 40.18 85.11 305.75 217.88 48.28 171.49 42.94 8.14 16.22 28 ER5a ExonRegion 0 35.55 177.25 37.58 77.93 86.19 237.08 117.87 90.10 93.71 55.30 18.26 61.03 108.67 270.24 29.92 62.55 171.33 100.64 48.82 158.04 8.99 27.17 15.50 29 E5_Da KnownBoundary 0 31.49 195.95 104.37 143.90 88.20 346.33 131.69 193.25 129.11 78.25 16.43 99.93 202.91 376.36 78.99 139.54 212.62 239.97 92.43 218.98 12.36 40.66 33.29 30 ER5b ExonRegion 0 64.61 273.84 116.50 163.13 146.41 354.54 155.93 173.88 108.44 81.14 17.04 52.85 100.11 226.84 51.36 49.91 126.86 78.61 53.78 129.15 6.37 24.59 14.84 31 E5_Db KnownBoundary 0 176.70 463.40 254.01 312.71 276.83 444.40 198.69 263.94 144.44 110.16 10.27 23.41 55.35 170.82 106.81 46.23 119.68 50.86 48.38 144.45 2.35 16.78 20.32 32 ER5c ExonRegion 0 78.93 223.73 172.01 175.01 119.36 227.45 108.39 199.77 95.11 75.82 10.72 26.00 50.70 137.44 72.27 35.58 91.77 34.58 43.74 100.55 3.54 20.85 8.95 33 ER5d ExonRegion 0 5.50 13.83 1.72 4.36 11.77 7.34 6.36 2.42 3.71 1.15 0.00 0.00 0.94 9.10 7.54 0.00 6.60 3.33 0.00 0.00 0.00 0.00 0.00