Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DISP1 Gene 0 17.10 23.62 15.66 26.90 15.59 22.50 9.32 16.29 22.73 25.97 14.11 9.59 9.61 9.16 5.20 10.54 6.95 17.17 15.46 17.62 51.57 17.66 16.52 2 495684 Transcript 0 9.09 3.71 1.17 1.19 3.93 1.00 1.92 0.42 0.60 0.85 4.92 1.47 1.12 1.70 3.15 4.88 2.14 1.01 1.10 4.19 3.71 2.43 5.35 3 360254 Transcript 0 1.50 3.00 1.01 1.39 1.27 1.34 2.68 2.57 2.71 1.19 1.41 3.39 2.89 1.41 0.39 1.53 1.39 1.43 2.52 3.48 1.99 0.60 2.18 4 284476 Transcript 0 9.21 22.99 9.29 13.34 14.03 24.25 6.31 12.36 21.03 19.90 13.97 21.86 11.07 11.74 2.85 12.01 12.07 16.10 10.04 16.48 40.10 19.18 17.22 5 482856 Transcript 0 7.13 7.73 2.73 18.17 4.91 3.70 7.69 4.50 6.68 6.76 4.07 3.52 5.40 0.40 1.69 3.14 0.77 1.51 5.11 11.61 2.78 0.97 1.37 6 ER1a ExonRegion 0 30.05 11.39 1.55 2.82 13.02 2.32 4.85 1.15 1.65 1.53 14.05 2.02 0.94 4.76 13.15 11.89 6.38 1.23 1.70 8.94 2.35 5.14 12.14 7 ER2a ExonRegion 0 31.03 10.69 3.10 4.09 14.46 2.45 5.51 1.73 2.47 2.29 15.68 8.24 2.95 5.53 8.89 15.92 6.60 1.22 2.21 13.21 6.65 7.33 15.73 8 E2a_E4a KnownJunction 0 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 0.00 2.94 6.30 0.00 3.84 9 Ix Intron 0 10.65 3.35 8.84 8.16 5.57 0.71 8.58 7.23 2.85 3.80 3.27 6.95 10.47 2.57 6.62 4.03 1.92 1.51 1.70 6.49 1.06 1.11 1.14 10 Ix_SR1 SilentIntronRegion 0 10.70 3.36 8.88 8.20 5.59 0.71 8.63 7.26 2.86 3.82 3.28 6.98 10.52 2.58 6.65 4.05 1.93 1.52 1.70 6.52 1.07 1.11 1.14 11 ER3a ExonRegion 0 4.66 7.68 1.72 2.56 3.39 1.15 7.93 2.43 6.97 1.30 3.60 13.58 9.93 4.21 1.56 5.50 4.16 1.45 2.01 8.04 0.69 1.94 2.77 12 E3_Da NovelBoundary 0 988.40 1449.48 1004.52 1621.51 1314.86 472.51 2108.86 1282.82 1361.79 912.21 256.59 305.05 378.87 71.05 160.21 717.59 789.43 597.26 532.25 1659.67 198.68 233.91 484.09 13 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 I3_AR1 ActiveIntronRegion 0 16.79 45.36 10.96 16.35 6.48 2.71 4.63 8.63 6.66 8.47 0.26 0.48 3.12 0.36 1.38 2.79 1.33 1.44 4.72 5.73 1.19 0.56 1.58 15 ER4a ExonRegion 0 2.54 2.39 1.85 1.39 0.00 2.20 3.07 0.08 0.12 2.16 4.71 0.05 2.81 1.62 0.00 2.34 1.98 3.26 3.82 4.23 7.75 2.45 5.77 16 E4_Da NovelBoundary 0 32.08 23.88 51.98 69.69 30.48 15.39 59.84 52.70 49.13 49.88 11.32 46.07 11.36 10.83 17.55 43.24 53.67 46.64 21.93 77.92 16.31 2.94 35.00 17 E4a_E6a NovelJunction 0 6.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 2.47 0.00 0.00 2.41 0.00 0.00 4.77 4.19 0.00 3.26 15.94 3.12 7.60 18 E4a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 19 ER5a ExonRegion 0 0.00 0.00 0.00 0.58 0.00 0.00 0.19 0.00 1.24 0.16 0.28 0.00 2.01 0.00 0.00 0.42 0.00 0.00 0.00 1.82 0.00 0.30 0.00 20 ER5b ExonRegion 0 0.77 1.85 0.00 1.36 0.00 0.00 0.24 0.00 2.81 1.36 2.28 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 4.06 0.00 0.00 0.00 21 ER5c ExonRegion 0 6.63 4.00 2.50 4.07 0.00 8.56 1.05 1.69 8.39 7.10 4.84 0.00 4.91 0.00 0.00 1.59 1.46 7.39 2.69 13.08 1.95 3.31 0.00 22 E5a_E6a KnownJunction 0 0.00 9.27 1.71 10.02 0.00 0.00 0.00 5.96 7.84 12.79 4.69 0.00 0.00 0.00 0.00 4.19 0.00 9.70 9.51 16.04 6.18 0.00 0.00 23 ER6a ExonRegion 0 11.89 12.46 14.49 16.25 9.73 14.76 8.61 15.81 15.19 20.47 16.58 14.07 13.85 13.57 7.64 13.74 14.34 20.20 14.87 26.45 61.85 16.87 18.11 24 E6_Da KnownBoundary 0 6.67 9.27 6.18 25.47 3.31 5.34 1.72 4.19 9.14 4.67 0.00 0.00 0.00 2.41 4.45 4.27 0.00 0.00 12.89 11.31 3.15 0.00 0.00 25 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.16 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 2.90 0.00 4.35 26 E6a_E8a KnownJunction 0 3.41 15.98 6.68 0.00 3.57 11.02 2.25 10.06 11.66 13.03 10.27 18.01 25.65 9.59 0.00 14.01 16.46 21.97 0.00 9.08 57.27 11.39 7.85 27 ER6b ExonRegion 0 7.13 7.73 2.73 18.17 4.91 3.70 7.69 4.50 6.68 6.76 4.07 3.52 5.40 0.40 1.69 3.14 0.77 1.51 5.11 11.61 2.78 0.97 1.37 28 E6_Db NovelBoundary 0 0.00 0.00 1.30 12.22 0.00 0.00 0.00 6.33 4.40 15.82 4.84 0.00 0.00 0.00 0.00 3.33 0.00 2.53 4.80 11.63 0.00 0.00 3.24 29 ER7a ExonRegion 0 1.34 4.30 2.32 3.01 1.70 2.05 2.80 5.62 3.87 1.81 2.05 0.00 1.63 1.42 0.00 0.63 1.40 2.17 8.08 5.88 4.34 0.44 1.60 30 E8a_E9a KnownJunction 0 3.26 22.82 5.80 1.70 12.31 21.24 25.61 1.85 12.53 16.49 21.37 13.95 21.43 19.37 9.64 10.60 12.62 27.94 17.60 25.82 71.97 22.04 32.35 31 ER8a ExonRegion 0 3.03 19.32 5.31 1.00 9.81 18.83 14.78 6.34 11.69 17.32 18.30 15.44 20.64 12.78 3.97 9.51 13.20 31.84 7.86 18.16 71.84 20.00 24.67 32 I8_AR1 ActiveIntronRegion 0 0.35 4.07 0.00 2.73 2.68 0.00 1.32 3.46 1.24 0.00 0.00 0.00 0.00 0.00 2.90 2.97 0.00 1.85 14.33 0.71 0.00 0.00 0.00 33 ER9a ExonRegion 0 5.19 15.99 4.14 8.28 9.62 21.01 5.72 5.99 14.54 20.27 12.33 6.21 9.42 13.41 4.59 6.81 14.64 22.23 14.90 17.35 58.27 16.65 21.08 34 E9a_E10a KnownJunction 0 10.45 11.77 3.67 10.26 21.05 20.90 5.92 3.78 17.97 23.32 14.42 0.00 19.97 9.77 0.00 8.72 9.44 16.17 0.00 3.00 54.30 10.72 20.57 35 ER10a ExonRegion 0 15.08 12.15 7.02 13.52 24.60 21.02 12.68 9.52 21.41 28.79 17.40 10.49 17.37 13.11 2.65 7.96 11.35 19.26 18.74 21.61 46.07 22.30 26.50 36 E10a_E11a KnownJunction 0 22.67 23.42 4.44 23.91 7.89 33.67 22.26 16.96 25.87 37.74 12.95 6.30 12.99 17.42 4.45 14.01 4.30 21.39 18.92 21.80 45.90 16.84 29.36 37 ER11a ExonRegion 0 10.76 24.69 4.05 13.68 10.08 27.81 16.75 13.65 27.58 26.00 15.21 16.26 12.87 11.98 2.78 17.89 5.42 19.19 19.89 17.33 27.75 25.00 23.76 38 E11a_E12a KnownJunction 0 14.30 32.10 9.46 9.39 20.63 49.23 9.54 12.16 29.14 19.18 19.32 18.91 0.00 22.54 4.45 7.52 13.56 12.39 9.13 17.90 32.87 43.35 26.04 39 E11b_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER11b ExonRegion 0 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 2.08 0.00 41 ER12a ExonRegion 0 10.45 19.45 8.04 12.35 10.70 36.68 9.93 12.86 27.17 21.15 19.93 15.96 10.85 19.18 2.90 5.94 9.08 11.89 18.32 26.60 33.19 33.08 20.01 42 ER12b ExonRegion 0 13.09 29.59 6.10 18.13 21.47 24.06 8.86 13.89 26.74 28.00 23.34 22.91 22.42 19.03 2.23 12.21 10.67 18.48 21.68 28.93 47.43 22.87 26.04 43 E12b_E13a KnownJunction 0 2.96 29.86 12.86 16.28 18.93 32.65 6.62 17.50 28.85 26.35 14.74 61.37 6.82 9.54 4.33 25.98 25.15 23.71 11.39 23.01 39.85 15.86 24.58 44 ER13a ExonRegion 0 21.49 30.38 20.64 35.68 19.59 28.52 10.37 20.53 28.56 32.69 15.88 9.97 9.55 9.76 6.07 11.90 6.58 20.06 18.07 18.16 63.16 21.30 18.78 45 IG49_SR1 SilentIntergenicRegion 0 1.28 3.36 0.70 1.20 2.13 3.20 2.27 1.72 5.79 5.02 0.84 0.48 2.52 0.37 0.07 1.00 0.00 2.33 1.63 4.73 7.78 2.33 1.15 46 IG49_AR16 ActiveIntergenicRegion 0 14.69 0.47 1.06 4.44 8.58 3.92 2.80 6.45 1.28 1.93 1.72 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 2.66 2.38