Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GGPS1 Gene 0 74.82 104.56 67.17 94.50 106.90 107.02 61.28 74.88 91.93 93.35 50.68 59.98 54.94 59.27 54.68 47.93 45.37 74.68 72.19 150.88 39.90 63.50 43.43 2 488594 Transcript 0 0.03 0.08 0.00 0.07 0.13 0.01 0.08 0.11 0.04 0.34 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.10 0.00 0.16 0.02 0.00 0.00 3 471812 Transcript 0 0.69 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 4 358966 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 451121 Transcript 0 0.00 0.24 0.00 0.00 2.05 1.40 0.00 0.00 0.00 0.00 3.41 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 1.56 0.49 0.86 6 282841 Transcript 0 0.00 1.74 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 7.29 0.00 1.49 0.00 7 391855 Transcript 0 3.56 0.00 4.14 4.13 8.66 2.84 0.00 4.03 3.04 6.39 9.53 0.00 6.82 21.84 5.19 0.00 0.00 4.93 8.47 3.00 8.15 14.76 3.50 8 482013 Transcript 0 0.00 0.00 3.22 0.00 0.00 0.00 0.00 0.00 1.65 2.31 0.00 0.00 0.00 4.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 489692 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 3.26 0.00 0.00 0.00 10 476121 Transcript 0 10.00 43.17 25.20 39.41 37.72 46.50 34.64 20.39 25.09 35.70 20.85 19.63 28.98 33.00 15.68 22.44 20.27 58.71 33.15 77.00 6.36 6.66 12.70 11 497327 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.24 0.00 0.00 0.00 0.00 12 ER1a ExonRegion 0 0.06 0.16 0.00 0.15 0.25 0.02 0.16 0.22 0.08 0.69 0.03 0.00 0.00 0.02 0.00 0.00 0.00 0.20 0.00 0.31 0.04 0.00 0.00 13 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER2a ExonRegion 0 0.69 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 15 E2_Ab KnownBoundary 0 3.19 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 16 ER2b ExonRegion 0 1.38 0.78 0.06 0.34 1.43 0.12 0.04 0.26 0.56 0.27 0.00 0.00 0.47 2.27 0.00 0.00 0.00 0.25 0.11 1.99 0.00 0.10 0.00 17 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 0 0.00 0.24 0.00 0.00 2.05 1.40 0.00 0.00 0.00 0.00 3.41 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 1.56 0.49 0.86 19 E3_Ae KnownBoundary 1 71.12 63.34 7.42 11.25 62.31 110.11 39.00 8.54 14.50 9.29 61.07 0.00 20.94 64.10 29.67 67.85 31.42 47.22 90.07 88.21 49.85 23.57 32.01 20 ER3b ExonRegion 0 2.12 2.03 0.00 0.00 2.68 5.50 0.00 0.00 0.00 0.00 7.73 0.00 0.00 1.62 0.00 0.00 0.00 1.85 3.19 0.00 6.61 2.08 2.94 21 ER3c ExonRegion 0 2.12 2.03 0.00 0.00 5.35 8.25 0.00 0.00 0.00 0.00 7.73 0.00 0.00 1.62 0.00 0.00 0.00 1.85 3.19 0.00 6.61 3.13 4.40 22 ER3d ExonRegion 1 76.57 61.01 12.54 12.11 82.16 126.86 34.03 10.37 26.08 13.36 57.53 0.00 11.86 61.05 29.87 69.93 40.97 30.54 94.81 92.11 54.83 27.70 49.23 23 ER3e ExonRegion 1 100.24 71.24 45.06 44.11 84.97 123.94 32.11 37.93 81.49 58.11 107.51 19.25 30.19 69.82 47.08 75.69 76.90 56.34 114.88 124.48 123.09 54.97 69.28 24 E3_Da NovelBoundary 1 0.00 6.12 15.32 18.98 7.22 7.44 4.24 6.41 13.89 23.69 19.37 0.00 0.00 40.97 14.96 57.34 3.74 66.41 115.77 117.86 0.00 9.06 29.02 25 E3a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 3.26 0.00 0.00 0.00 26 E3a_E4d KnownJunction 0 0.00 0.00 3.22 0.00 0.00 0.00 0.00 0.00 1.65 2.31 0.00 0.00 0.00 4.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E3a_E5a KnownJunction 1 72.46 48.35 66.70 104.62 48.30 42.02 1.99 81.57 117.71 108.31 101.13 12.00 34.74 168.17 65.15 66.56 60.40 90.62 170.36 155.19 94.77 120.39 63.94 28 E3a_E6a KnownJunction 0 3.56 0.00 4.14 4.13 8.66 2.84 0.00 4.03 3.04 6.39 9.53 0.00 6.82 21.84 5.19 0.00 0.00 4.93 8.47 3.00 8.15 14.76 3.50 29 I3 Intron 0 4.85 34.38 9.42 19.78 29.90 48.34 33.76 9.59 11.07 13.23 11.08 3.06 4.43 23.57 11.67 29.80 12.29 59.73 34.68 62.79 11.37 5.37 9.26 30 I3_AR1 ActiveIntronRegion 0 4.91 34.77 9.52 20.00 30.21 48.88 34.14 9.70 11.19 13.37 11.20 3.10 4.48 23.84 11.80 30.13 12.43 60.35 35.06 63.49 11.49 5.43 9.36 31 E4_Aa NovelBoundary 0 7.56 76.63 48.87 64.99 29.37 42.19 32.28 38.94 43.63 40.35 18.00 0.00 6.01 26.31 10.38 42.21 35.81 131.45 45.55 105.85 21.56 8.63 8.37 32 E4_Ab NovelBoundary 0 0.00 47.69 27.70 45.91 34.38 89.04 20.62 43.54 22.92 31.40 24.85 11.85 26.95 29.25 4.70 23.93 25.99 109.35 51.39 124.45 3.09 11.94 14.77 33 ER4a ExonRegion 0 0.00 10.02 5.69 7.30 11.85 37.85 5.77 8.89 5.03 5.98 6.77 5.88 8.04 9.74 2.90 7.01 10.14 17.69 18.88 28.27 0.94 2.08 8.60 34 ER4b ExonRegion 0 4.61 33.19 27.78 50.41 41.60 69.71 27.44 32.96 49.83 41.23 21.15 20.56 28.75 49.46 23.62 64.04 46.84 122.41 65.45 150.94 21.67 13.87 18.63 35 E4_Ac KnownBoundary 0 15.93 53.48 41.25 74.95 33.87 59.74 38.33 56.23 67.22 64.93 18.00 32.41 45.29 48.15 29.92 57.08 60.12 206.65 66.45 158.64 36.57 13.78 7.17 36 ER4c ExonRegion 0 24.91 52.32 55.63 77.88 47.51 48.70 39.70 53.61 61.47 65.11 32.09 26.60 32.09 56.24 31.08 62.41 65.88 234.11 76.54 177.17 24.43 9.94 16.15 37 E4_Da KnownBoundary 0 21.63 53.48 61.44 105.48 59.76 72.52 80.02 54.67 58.56 54.31 38.80 21.31 35.06 67.87 39.43 84.00 61.52 250.34 121.60 218.72 11.49 7.65 24.24 38 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.24 0.00 0.00 0.00 0.00 39 ER4d ExonRegion 0 13.34 73.68 48.32 79.98 54.91 83.34 61.14 34.92 55.47 59.69 31.70 25.15 38.42 56.79 33.66 50.74 43.45 173.59 69.60 197.86 18.46 5.58 23.43 40 E4_Db KnownBoundary 1 12.08 76.63 60.23 99.45 35.48 118.17 34.58 47.56 71.21 72.47 38.27 61.37 105.03 75.93 31.89 44.18 67.79 158.56 76.24 240.39 11.43 8.70 15.71 41 ER4e ExonRegion 1 21.27 89.31 61.66 95.50 83.58 100.71 83.13 51.66 64.33 89.73 54.23 40.73 69.08 85.82 32.07 56.94 48.97 169.32 88.07 195.72 16.39 13.44 30.08 42 E4_Ad KnownBoundary 1 27.63 114.45 62.59 124.59 41.09 49.40 68.23 68.76 76.97 121.66 52.33 31.51 142.04 96.47 20.52 61.78 44.97 110.27 78.59 196.99 17.54 24.98 44.47 43 ER4f ExonRegion 0 28.82 132.24 68.98 112.47 152.31 127.24 121.60 60.17 63.84 95.27 49.17 56.20 90.70 86.84 41.50 61.44 45.48 103.22 82.37 169.42 12.42 22.62 29.51 44 E4_Dc KnownBoundary 0 17.48 141.09 80.63 129.62 102.38 49.97 44.21 70.48 61.60 119.00 33.85 53.12 73.05 65.45 68.24 35.80 22.44 70.06 36.61 145.22 5.50 34.17 11.35 45 ER4g ExonRegion 0 18.71 73.34 33.45 52.76 55.45 47.43 49.66 21.00 29.27 44.01 22.43 31.90 38.81 36.43 27.73 25.82 21.98 47.84 25.65 84.02 8.10 11.11 12.14 46 E4_Dd NovelBoundary 0 35.12 100.31 25.96 76.68 58.15 135.72 80.33 34.71 37.62 41.69 25.01 12.15 6.82 24.49 6.06 24.01 29.55 35.77 21.93 99.01 2.72 14.02 4.35 47 E4d_E5a NovelJunction 0 0.00 43.15 16.14 10.06 0.00 34.36 17.00 12.24 19.59 13.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 13.81 0.00 0.00 0.00 48 E4d_E5b KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 1.74 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 I4 Intron 0 19.82 32.74 26.34 42.95 43.04 25.71 32.00 25.58 22.82 26.30 11.44 29.19 33.26 13.86 16.27 12.41 8.86 8.27 10.58 37.13 2.74 11.48 6.94 50 I4_AR1 ActiveIntronRegion 0 12.68 34.26 15.11 44.12 50.26 24.95 45.40 19.08 15.38 31.82 10.42 18.92 31.81 30.02 27.37 19.79 13.54 21.26 7.49 53.98 10.81 8.46 6.45 51 I4_SR1 SilentIntronRegion 0 20.18 64.14 52.87 82.08 87.68 64.74 79.55 52.20 38.75 48.68 28.74 52.83 30.29 32.51 33.93 28.43 23.81 20.35 24.25 64.10 6.45 14.96 8.01 52 I4_AR2 ActiveIntronRegion 0 22.01 36.40 31.25 48.20 48.46 28.30 35.23 28.95 25.17 29.19 14.55 38.80 37.06 13.84 18.96 12.28 8.27 8.45 11.73 40.62 1.71 10.35 7.49 53 I4_SR2 SilentIntronRegion 0 17.38 22.71 16.45 29.54 28.00 16.18 19.01 17.40 17.79 18.36 4.53 13.10 28.59 9.59 8.82 9.48 6.97 5.00 7.17 26.65 2.90 12.81 6.06 54 E5_Ab NovelBoundary 0 16.15 39.01 17.12 34.83 29.80 23.40 28.00 22.14 15.48 17.16 2.00 0.00 6.66 2.18 4.70 3.25 4.11 18.28 3.58 56.31 2.35 5.45 7.94 55 ER5a ExonRegion 1 64.55 70.16 68.62 111.08 69.12 49.82 23.17 100.54 131.95 96.91 97.29 25.98 51.59 157.81 89.46 89.16 66.57 112.40 156.61 190.78 102.84 120.15 95.93 56 ER5b ExonRegion 0 75.71 112.90 100.95 159.07 214.00 154.61 73.82 144.28 178.47 145.92 124.48 114.51 137.57 124.46 123.35 155.64 74.63 169.27 202.87 270.55 63.20 164.84 173.60 57 E5a_E6a KnownJunction 0 52.38 164.64 126.34 165.78 448.81 310.96 129.93 124.74 172.74 167.00 163.57 152.75 113.14 122.43 123.00 45.80 84.24 127.01 93.46 224.48 69.68 128.47 66.67 58 I5_AR1 ActiveIntronRegion 0 8.02 11.99 12.99 21.31 11.31 10.09 11.94 6.96 8.13 7.23 6.12 6.36 14.83 4.04 10.47 6.89 8.37 8.35 6.07 35.11 4.19 3.48 4.97 59 ER6a ExonRegion 0 122.37 231.11 106.76 161.68 271.46 362.68 117.46 153.03 176.69 174.18 137.18 181.04 118.18 116.04 114.78 81.13 79.18 152.32 113.96 275.22 97.68 158.67 85.45 60 E6_Da NovelBoundary 0 18.23 23.94 25.04 7.39 15.70 29.93 12.98 6.78 13.72 6.58 0.00 6.30 0.00 0.00 0.00 0.00 4.39 2.57 9.41 40.08 0.00 3.12 0.00 61 E6a_E7a KnownJunction 1 150.62 345.00 107.51 203.60 118.51 225.55 93.80 184.22 181.71 179.60 87.65 242.03 73.21 120.49 149.08 105.10 99.21 140.20 123.39 330.39 117.62 225.77 115.58 62 I6_AR1 ActiveIntronRegion 0 3.17 30.16 5.72 12.49 24.08 11.00 9.71 6.34 7.41 5.93 0.00 0.00 0.00 1.62 0.00 0.00 1.10 0.00 0.00 19.86 0.00 10.76 5.87 63 I6_SR2 SilentIntronRegion 0 4.96 23.11 4.59 9.63 8.18 10.09 10.61 3.40 5.88 5.69 0.00 2.89 4.69 0.55 0.00 0.00 1.28 0.00 0.00 15.05 0.00 2.51 1.21 64 E7_Aa NovelBoundary 1 3.19 12.50 10.79 10.75 15.96 5.79 4.33 10.19 5.61 8.62 0.00 7.50 33.93 0.00 4.94 8.72 4.77 0.00 8.66 14.57 0.00 2.51 4.35 65 ER7a ExonRegion 0 218.77 242.65 135.25 191.87 216.91 241.02 118.69 166.69 200.90 200.75 125.89 166.91 109.64 145.95 127.74 96.00 111.05 112.13 134.10 298.70 120.03 161.15 101.47 66 E7_Da KnownBoundary 0 331.91 359.80 121.70 149.30 307.56 282.68 175.99 156.82 157.00 146.85 100.18 143.15 103.89 182.24 180.60 85.62 74.05 60.94 138.73 268.00 73.58 164.17 96.55 67 ER7b ExonRegion 0 256.56 249.80 150.16 189.88 250.51 237.70 150.04 160.93 189.91 180.56 109.60 132.69 104.19 139.94 130.56 67.48 101.08 74.86 120.79 233.06 64.50 176.14 62.94 68 E7_Db KnownBoundary 0 337.02 241.08 164.87 210.06 275.89 222.14 173.65 157.97 184.40 166.28 129.66 164.45 109.73 103.07 139.56 68.61 122.39 54.14 125.37 234.64 54.55 199.44 27.74 69 ER7c ExonRegion 0 182.42 151.16 134.79 186.56 229.94 202.07 103.46 186.81 189.51 187.82 107.08 165.59 128.69 95.75 145.43 73.50 90.17 53.84 106.96 235.63 52.65 186.40 63.22 70 E7_Dc KnownBoundary 0 339.76 95.38 132.31 162.08 279.37 273.42 124.45 138.71 149.97 85.64 73.91 102.03 151.61 54.98 116.57 56.74 45.44 51.98 143.16 175.45 32.74 103.91 65.99 71 E7_Dd KnownBoundary 0 17.71 63.15 25.25 33.10 25.98 38.33 18.77 41.24 72.45 55.09 11.53 31.06 13.64 4.65 26.70 16.06 18.51 17.74 22.68 68.90 43.18 41.46 20.06 72 ER7d ExonRegion 1 163.50 73.50 88.80 122.17 156.15 176.44 70.08 94.82 142.70 92.86 43.90 79.63 91.46 35.90 98.95 38.43 35.84 47.78 93.17 126.06 43.44 69.50 50.76 73 ER7e ExonRegion 1 36.78 61.41 45.77 64.51 52.80 40.91 27.77 49.20 101.55 79.16 16.06 48.59 35.44 14.08 20.12 14.73 11.66 31.21 29.16 101.28 44.56 44.03 29.63 74 E7_De KnownBoundary 0 65.05 84.52 38.44 69.16 93.97 62.52 39.88 46.04 86.43 67.15 16.90 44.26 32.30 17.72 15.20 12.90 9.54 31.13 54.97 143.88 44.97 70.17 26.89 75 ER7f ExonRegion 0 44.41 74.28 48.65 60.73 60.81 51.93 27.83 50.27 68.45 64.15 11.17 14.81 15.74 14.64 22.65 19.92 12.74 33.45 46.54 87.41 22.92 38.05 32.00 76 ER7g ExonRegion 0 0.00 1.74 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 7.29 0.00 1.49 0.00 77 IG43 Intergenic 0 2.92 9.78 5.29 8.28 10.91 6.96 3.98 9.18 21.23 7.56 0.30 1.49 1.87 0.58 1.14 0.95 0.51 3.29 4.40 11.16 1.40 2.88 4.57 78 IG43_SR1 SilentIntergenicRegion 0 2.92 9.79 5.29 8.28 10.91 6.96 3.98 9.18 21.24 7.56 0.30 1.49 1.87 0.58 1.14 0.95 0.51 3.29 4.40 11.16 1.41 2.88 4.57