Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GALNT2 Gene 0 39.73 20.25 80.82 45.58 25.94 42.31 36.98 40.16 46.68 53.19 52.47 72.68 49.50 146.69 167.26 131.02 73.95 110.48 41.23 109.62 225.47 158.93 111.24 2 494106 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 366672 Transcript 0 37.29 27.72 82.51 46.29 39.90 55.41 54.20 49.73 70.71 90.09 104.99 128.64 112.04 281.78 269.51 230.83 164.72 162.12 78.27 181.55 446.49 256.35 197.43 4 488903 Transcript 0 6.42 1.51 9.53 5.00 1.23 1.16 3.63 6.50 3.58 4.40 1.99 2.98 2.92 0.54 6.97 5.27 2.65 6.16 1.83 6.09 0.76 0.60 3.84 5 485438 Transcript 0 2.37 1.67 1.34 0.00 0.71 0.26 4.67 1.09 2.71 3.42 0.79 10.72 4.62 5.84 7.07 3.35 3.53 5.40 1.30 10.27 2.78 2.00 2.34 6 492568 Transcript 0 12.97 4.17 13.62 10.65 6.47 3.97 6.31 8.20 9.67 8.81 2.85 6.70 5.20 4.76 11.48 12.57 6.38 24.70 7.12 14.25 11.63 11.51 8.91 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.02 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 1 1.29 0.00 0.14 0.00 2.20 9.60 3.89 0.00 0.00 0.00 13.76 0.00 0.46 22.74 66.10 9.27 33.33 1.23 13.18 3.96 66.50 18.06 25.57 10 E2_Ab KnownBoundary 0 10.52 2.89 9.20 6.89 0.00 41.00 18.99 1.89 8.28 23.26 34.06 0.00 0.00 23.25 80.97 41.70 78.26 7.67 16.09 10.42 186.20 69.32 55.91 11 ER2b ExonRegion 0 4.78 1.88 12.77 5.02 2.51 10.73 7.16 3.06 11.16 23.52 39.00 14.05 28.78 54.18 87.69 38.60 69.39 21.39 26.50 41.25 191.59 56.30 43.63 12 E2a_E3a KnownJunction 0 0.00 0.00 3.19 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2a_E4a KnownJunction 1 10.37 2.70 30.87 17.25 7.30 25.38 7.60 15.16 30.76 60.36 118.45 37.66 39.45 185.47 220.29 78.01 237.12 56.79 144.00 119.33 666.76 81.75 128.47 14 I2_SR2 SilentIntronRegion 0 1.97 1.08 2.24 0.40 1.58 1.33 4.69 5.34 6.04 3.02 0.38 4.21 6.14 0.69 5.75 5.14 2.93 4.35 3.41 21.96 0.65 0.14 9.37 15 I2_AR3 ActiveIntronRegion 0 5.09 0.39 11.58 2.11 2.16 0.00 10.89 4.96 5.08 1.09 1.62 3.84 9.46 1.07 4.63 5.37 2.98 3.58 0.00 22.86 1.81 4.17 1.85 16 I2_AR9 ActiveIntronRegion 0 5.20 0.00 0.00 1.99 4.79 3.21 14.18 10.37 7.05 4.68 1.45 0.00 0.00 2.37 18.25 0.74 14.17 0.00 3.19 27.04 2.20 1.56 4.16 17 I2_AR11 ActiveIntronRegion 0 13.78 1.52 10.24 6.51 4.90 3.39 11.14 8.92 9.06 5.64 0.83 4.05 6.44 1.61 10.38 6.42 4.14 7.56 3.97 22.12 2.19 1.42 8.05 18 I2_SR9 SilentIntronRegion 0 2.45 1.65 4.16 3.42 2.46 0.99 4.61 6.93 2.69 1.24 1.17 0.97 1.16 1.24 6.00 7.20 3.21 4.15 3.02 23.76 0.30 1.13 6.82 19 E3_Aa NovelBoundary 0 3.78 26.44 26.85 18.31 7.56 2.27 8.92 25.59 13.66 17.54 0.00 12.60 6.17 0.00 38.82 12.05 9.54 25.91 8.66 41.35 2.47 0.00 16.56 20 ER3a ExonRegion 0 12.84 3.03 15.86 10.00 2.45 2.31 7.26 10.62 7.17 8.81 3.99 5.95 5.85 1.07 13.94 10.53 5.30 12.32 3.65 12.19 1.52 1.19 7.69 21 I3_AR18 ActiveIntronRegion 1 6.86 2.73 1.62 1.64 1.18 4.03 5.62 4.95 3.19 2.69 0.83 17.69 2.99 1.05 2.55 7.58 0.94 6.36 0.22 11.17 2.11 0.00 1.59 22 ER4a ExonRegion 0 11.26 10.21 58.65 35.29 20.21 15.82 22.52 36.35 49.34 62.59 117.29 123.39 67.76 262.88 255.31 249.31 163.18 161.99 94.78 193.28 464.56 236.08 274.67 23 E4a_E5a KnownJunction 1 9.26 15.59 56.41 37.02 23.85 13.63 17.97 26.33 57.06 75.91 89.60 144.95 32.47 228.50 227.83 339.40 71.44 213.73 66.07 212.08 329.89 285.16 299.28 24 ER5a ExonRegion 0 11.68 11.30 57.70 33.52 12.41 54.12 32.11 30.83 56.99 60.56 111.97 171.66 74.43 241.68 232.10 199.48 140.93 178.34 51.86 179.79 485.46 218.07 163.69 25 E5a_E6a KnownJunction 1 20.30 3.03 67.95 35.39 14.35 39.92 37.32 36.68 64.24 57.48 83.34 240.08 60.71 244.22 319.55 159.10 135.30 146.83 47.34 198.21 505.03 252.40 171.49 26 ER6a ExonRegion 1 15.03 14.93 40.55 29.97 16.60 26.14 35.53 26.64 48.56 53.41 87.78 154.42 43.82 259.19 238.34 176.38 146.47 165.48 46.17 151.17 462.31 225.13 134.37 27 E6a_E7a KnownJunction 0 35.64 29.93 76.79 37.32 53.31 45.88 67.17 33.11 73.15 64.90 169.46 146.90 115.58 335.87 373.70 347.43 263.58 239.35 72.38 210.35 558.65 292.21 182.68 28 ER7a ExonRegion 0 29.35 25.84 86.12 34.35 48.75 49.11 69.64 43.85 62.10 69.25 110.37 101.93 79.87 333.14 314.40 301.36 217.57 212.19 65.63 215.33 596.46 293.41 227.76 29 E7a_E8a KnownJunction 0 52.97 40.32 91.01 54.67 84.55 68.14 111.29 59.52 66.98 85.88 91.87 104.43 73.37 308.97 320.54 349.65 237.59 217.34 66.17 250.87 605.23 304.64 303.30 30 ER8a ExonRegion 0 29.76 29.89 72.04 46.54 55.30 63.24 81.76 44.15 66.36 92.92 117.29 121.16 94.01 357.06 355.05 308.61 213.21 217.25 76.30 223.73 560.34 302.49 274.13 31 E8a_E9a KnownJunction 0 41.04 23.94 70.75 50.48 59.00 61.56 70.53 36.68 58.27 72.47 106.55 159.50 81.98 361.94 405.46 173.72 164.10 202.62 80.28 258.48 555.93 260.43 184.73 32 E8a_E13a NovelJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 2.16 0.00 0.00 1.02 0.00 0.00 0.00 0.00 11.87 0.00 4.49 0.00 0.00 0.00 0.00 2.27 4.35 33 I8_AR2 ActiveIntronRegion 0 0.00 2.03 5.25 7.20 5.35 0.00 18.35 4.94 2.47 1.15 3.87 0.62 4.69 1.62 5.80 14.86 13.20 7.39 2.28 8.51 0.00 2.08 2.94 34 ER9a ExonRegion 0 15.82 22.15 83.59 50.02 37.55 60.98 51.97 39.15 65.96 86.01 94.35 138.15 86.92 287.70 310.74 251.53 149.11 187.94 67.15 220.61 536.87 270.91 210.91 35 E9a_E10a KnownJunction 0 21.34 22.23 88.35 47.48 66.55 42.31 42.31 58.98 88.57 105.38 146.56 115.69 133.92 328.74 280.36 323.68 170.73 198.06 79.53 180.31 550.07 292.39 217.85 36 ER10a ExonRegion 0 38.53 30.34 90.79 54.31 44.21 55.87 56.83 49.93 89.66 95.36 119.97 136.03 117.89 404.50 291.77 363.07 177.80 173.84 95.52 235.61 568.18 334.36 243.04 37 E10a_E11a KnownJunction 0 34.23 22.50 122.94 66.89 54.41 68.99 75.87 73.56 112.12 114.70 88.18 153.20 137.98 410.03 316.71 227.21 122.86 156.98 94.21 237.90 422.06 321.97 225.53 38 ER11a ExonRegion 0 40.72 37.07 107.03 72.99 56.28 81.62 93.34 61.67 91.58 117.32 124.21 184.74 176.52 315.58 345.55 321.19 216.62 232.80 84.99 235.83 500.29 307.93 292.03 39 E11a_E12a KnownJunction 0 50.08 59.79 122.50 74.62 15.20 98.24 106.56 50.36 87.12 136.83 119.98 225.52 197.88 333.22 316.83 381.87 306.87 241.71 83.58 257.46 562.79 414.31 228.60 40 ER12a ExonRegion 0 55.05 38.72 113.09 49.26 47.29 95.36 98.42 56.36 87.71 96.53 154.09 168.06 124.56 402.14 339.61 351.91 190.98 206.59 98.62 227.31 535.01 344.10 250.52 41 E12a_E13a KnownJunction 0 78.24 58.15 90.83 44.38 80.22 56.79 47.30 60.21 74.16 97.54 136.93 132.49 108.60 305.73 357.75 191.57 174.85 193.84 83.39 217.83 496.63 350.07 254.64 42 ER13a ExonRegion 0 44.53 34.94 107.30 61.31 42.54 59.16 53.71 54.00 84.50 111.13 117.07 164.93 114.22 268.71 303.83 227.61 163.56 209.99 60.37 229.42 469.16 288.18 211.18 43 E13a_E15c KnownJunction 0 68.83 22.17 114.48 66.29 62.56 67.92 61.30 108.35 100.14 140.46 120.71 225.37 181.32 404.09 391.74 291.55 181.86 271.73 101.84 229.91 518.74 319.46 291.77 44 E14_Aa NovelBoundary 0 7.56 0.00 0.00 2.06 0.00 0.00 4.42 5.09 2.89 0.00 0.00 0.00 6.82 0.00 0.00 8.72 4.77 5.39 21.55 15.66 3.15 5.63 8.54 45 ER14a ExonRegion 0 2.67 0.00 0.00 0.00 0.00 0.00 5.62 1.62 0.00 0.00 1.22 5.56 0.00 9.99 4.08 5.65 0.16 11.86 2.01 7.67 0.00 2.57 1.74 46 E14a_E15a KnownJunction 0 0.00 0.00 3.81 0.00 0.00 0.00 1.77 0.00 3.73 3.47 0.00 12.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.93 0.00 0.00 0.00 47 Ix Intron 0 6.04 3.87 4.38 5.15 6.42 2.49 10.31 5.13 6.92 3.41 2.63 14.74 18.04 4.12 8.04 8.35 4.49 5.59 5.05 16.19 4.89 14.25 6.52 48 Ix_SR1 SilentIntronRegion 0 6.10 3.01 3.30 3.68 5.94 2.72 10.46 5.94 6.36 3.09 3.50 13.74 20.29 3.68 7.46 8.80 5.16 5.84 6.29 17.68 3.44 13.36 7.25 49 Ix_AR1 ActiveIntronRegion 0 7.72 5.81 5.38 6.50 9.04 2.82 12.13 3.46 8.06 4.21 1.48 18.39 19.72 4.62 9.21 7.69 4.06 4.09 2.70 14.14 8.25 14.88 4.90 50 E15_Aa NovelBoundary 0 25.19 9.14 14.25 12.15 3.14 0.00 1.85 10.15 18.46 8.35 5.21 18.91 6.82 16.19 15.95 35.03 4.11 19.98 8.66 18.34 15.01 25.90 0.00 51 ER15a ExonRegion 0 4.45 5.01 0.20 0.00 2.12 0.77 6.62 1.65 4.41 6.79 1.15 14.00 13.85 7.54 17.14 4.39 10.44 4.34 1.89 12.22 8.33 3.44 5.29 52 E15_Ab KnownBoundary 0 210.56 494.45 773.89 713.20 162.56 104.66 270.19 786.53 813.65 625.91 86.86 82.53 15.75 17.95 43.51 293.17 180.27 840.76 235.77 202.87 105.58 101.16 227.41 53 ER15b ExonRegion 0 12.74 2.92 6.67 6.80 7.55 4.50 7.65 12.34 8.88 5.18 3.83 10.33 11.05 18.89 16.29 17.31 8.29 16.07 15.21 12.65 9.76 19.23 11.37 54 E15_Ac KnownBoundary 0 20.60 3.29 3.05 9.99 7.47 10.33 15.02 10.60 14.50 2.47 5.11 0.00 26.30 12.36 28.18 10.85 0.00 17.74 14.40 10.61 13.53 14.14 16.30 55 ER15c ExonRegion 0 56.02 40.43 135.04 98.56 89.06 120.21 97.27 84.39 117.64 140.67 182.05 271.06 197.85 464.99 469.06 380.85 211.33 252.92 118.52 270.58 482.59 492.00 347.35 56 E15a_E16a KnownJunction 0 78.75 74.07 172.97 133.95 115.79 131.74 152.63 95.58 125.14 163.40 154.93 274.29 217.19 464.95 456.02 392.55 209.82 226.00 110.87 322.91 554.82 376.46 278.71 57 ER16a ExonRegion 0 54.25 49.48 155.05 118.13 78.33 135.66 127.08 107.74 132.92 154.50 183.95 332.65 215.41 392.09 410.18 350.96 231.38 255.67 95.41 268.03 596.31 401.67 260.87 58 E16_Da KnownBoundary 0 6.96 0.00 8.63 8.92 0.00 2.90 4.33 4.81 7.81 4.84 7.42 12.60 0.00 6.89 16.32 0.00 4.77 16.21 3.86 2.56 16.31 15.25 0.00 59 E16a_E17a KnownJunction 0 72.98 44.27 180.66 126.46 112.90 163.71 72.29 118.05 153.30 170.68 260.59 341.06 201.77 445.94 520.18 359.82 256.10 221.24 104.57 335.12 593.43 523.24 343.07 60 ER16b ExonRegion 0 12.97 4.17 13.62 10.65 6.47 3.97 6.31 8.20 9.67 8.81 2.85 6.70 5.20 4.76 11.48 12.57 6.38 24.70 7.12 14.25 11.63 11.51 8.91 61 E16_Db NovelBoundary 0 46.60 6.38 5.29 3.60 17.57 2.78 9.94 7.60 4.57 4.00 2.26 0.00 0.00 7.42 4.70 3.76 3.46 3.52 3.86 0.00 0.00 14.27 0.00 62 Ix Intron 0 12.62 5.44 10.89 9.19 10.45 1.51 3.54 9.00 6.43 2.81 3.18 5.87 3.35 3.65 5.83 5.50 3.39 13.43 2.62 6.13 8.61 9.85 8.45 63 Ix_AR1 ActiveIntronRegion 0 12.67 5.46 10.93 9.23 10.50 1.51 3.55 9.04 6.46 2.82 3.19 5.89 3.36 3.67 5.85 5.52 3.41 13.48 2.63 6.15 8.65 9.89 8.49 64 E17_Aa NovelBoundary 0 27.19 6.58 36.34 31.26 33.28 13.69 15.19 28.46 12.01 6.96 5.32 12.60 6.82 4.83 23.73 25.04 4.77 29.10 0.00 12.85 8.09 11.70 11.52 65 ER17a ExonRegion 1 91.36 47.06 200.21 137.72 72.90 102.59 81.87 131.08 135.63 158.55 162.29 420.74 296.25 455.38 527.02 402.31 234.05 257.54 99.98 322.11 651.97 461.08 299.42 66 E17_Da NovelBoundary 0 56.23 6.51 13.93 19.54 7.47 10.22 8.88 9.32 9.35 2.15 0.00 6.30 0.00 2.30 11.13 15.55 4.77 17.08 0.00 7.93 10.75 2.82 4.35 67 E17a_E18a KnownJunction 1 112.98 43.41 189.23 149.36 50.25 85.92 90.71 100.92 121.09 123.62 126.82 329.51 186.19 408.91 494.10 372.89 227.30 310.69 133.93 230.74 646.25 436.04 298.00 68 E18_Aa NovelBoundary 0 41.34 6.18 6.71 5.36 21.39 12.72 8.61 11.01 9.72 1.50 0.00 5.55 0.00 54.56 0.00 10.94 3.55 12.15 0.00 5.50 11.43 2.76 0.00 69 ER18a ExonRegion 0 78.68 47.57 155.83 104.68 77.15 112.18 91.93 96.10 102.34 115.59 140.81 287.48 158.84 370.84 458.25 339.81 211.04 286.60 93.07 283.78 591.77 362.91 249.13 70 E18a_E19a KnownJunction 0 59.57 53.15 156.59 101.72 68.76 144.63 122.42 89.42 95.28 88.30 138.56 258.08 141.71 442.58 617.59 394.60 145.49 286.90 98.26 283.03 538.08 317.68 271.03 71 ER19a ExonRegion 0 73.73 35.55 154.10 80.35 39.84 73.81 58.66 68.36 74.34 84.70 72.40 86.66 59.39 219.09 263.48 192.36 96.46 170.44 61.56 165.27 326.15 257.18 170.19 72 ER19b ExonRegion 0 4.23 4.07 1.84 0.68 0.00 3.67 3.31 8.21 2.16 5.45 0.00 0.00 11.73 0.41 3.63 2.97 0.00 1.85 0.00 3.72 1.65 3.65 0.00 73 IG32_AR6 ActiveIntergenicRegion 0 0.52 11.87 16.13 10.54 19.08 19.94 5.61 26.78 24.28 7.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.33 3.80 8.76 0.00 0.37 0.00