Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DUSP10 Gene 0 20.51 20.69 25.33 14.61 15.83 16.18 9.97 16.98 12.49 9.16 94.78 71.87 60.57 94.13 70.36 196.84 202.62 68.13 16.37 37.02 27.39 67.00 66.65 2 366899 Transcript 0 0.00 1.37 1.01 0.00 1.11 0.92 0.05 0.00 0.00 1.17 2.57 0.00 2.91 3.89 0.00 4.05 5.18 0.32 0.00 0.26 0.27 2.51 1.47 3 391886 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 323825 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 477026 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 418487 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 3.44 0.00 0.00 0.00 16.43 5.85 6.33 9.18 4.82 16.66 58.34 1.53 0.00 7.48 12.05 4.78 3.33 7 391885 Transcript 0 2.71 4.18 23.30 2.53 1.93 0.50 3.13 11.20 10.38 0.93 18.04 31.32 12.58 9.34 6.07 19.84 27.88 7.30 3.25 6.03 5.20 3.89 9.22 8 468085 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 494642 Transcript 0 0.00 0.00 0.78 0.00 0.38 0.00 0.56 0.73 1.30 0.00 0.83 4.15 3.40 0.76 0.59 3.41 1.40 0.81 0.00 1.21 0.31 0.90 4.14 10 IG36_AR2 ActiveIntergenicRegion 0 0.00 0.38 1.02 0.60 2.22 1.15 1.53 0.00 0.00 0.00 4.06 19.60 10.56 6.56 1.50 5.71 10.47 1.95 0.40 1.33 0.00 1.89 3.37 11 ER1a ExonRegion 0 0.00 1.37 1.01 0.00 1.11 0.92 0.05 0.00 0.00 1.17 2.57 0.00 2.91 3.89 0.00 4.05 5.18 0.32 0.00 0.26 0.27 2.51 1.47 12 E1_Ab KnownBoundary 0 0.00 2.89 1.83 0.00 4.33 4.71 0.00 0.00 0.00 2.85 2.53 0.00 12.50 6.71 0.00 11.11 7.67 0.00 0.00 0.00 0.00 3.00 3.84 13 E1_Ac KnownBoundary 0 9.11 14.60 9.14 1.30 10.87 16.01 9.76 1.77 1.16 5.69 25.37 0.00 6.82 9.24 8.90 34.26 56.47 16.91 7.81 33.30 13.28 20.88 28.94 14 ER1b ExonRegion 0 2.75 4.95 6.41 0.41 5.98 11.86 3.66 0.92 0.41 4.51 14.17 0.00 11.41 11.31 2.61 22.79 25.31 6.59 2.44 12.62 7.05 9.86 16.05 15 ER1c ExonRegion 1 51.40 48.81 27.37 23.55 28.07 31.04 22.14 23.89 15.55 12.97 198.57 9.02 47.55 149.06 110.49 692.89 399.04 248.62 83.50 93.70 65.99 126.38 266.23 16 E1a_E2a KnownJunction 1 14.00 11.58 35.21 22.18 0.00 37.08 25.00 11.99 19.01 13.40 98.39 43.66 65.74 111.25 23.86 409.47 250.30 127.39 26.54 32.28 51.09 48.56 225.10 17 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 4.95 0.00 0.00 0.00 0.00 4.36 14.12 2.03 0.00 0.00 2.66 0.00 21.26 18 ER2a ExonRegion 1 4.43 8.32 35.70 17.01 0.00 22.51 14.59 13.04 18.70 18.56 160.34 50.38 36.13 78.29 20.90 217.30 387.48 82.73 13.47 42.70 59.75 33.19 107.19 19 E2_Ab KnownBoundary 1 0.00 3.35 42.34 20.41 0.00 7.33 3.75 25.51 27.84 22.54 226.53 49.97 38.80 72.75 27.81 83.65 552.69 64.17 4.80 73.38 73.45 18.86 27.91 20 ER2b ExonRegion 0 2.47 6.71 35.91 27.93 11.07 13.81 4.46 33.59 26.56 18.27 205.04 75.69 84.28 159.89 117.41 523.85 436.37 192.98 37.34 100.45 66.67 129.86 183.32 21 E2_Da KnownBoundary 1 2.82 17.63 46.36 24.11 30.73 40.32 14.40 25.67 16.84 15.31 122.08 20.11 52.76 66.04 51.30 121.16 258.25 91.57 13.84 67.11 45.34 56.33 71.19 22 E2a_E2c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 3.44 0.00 0.00 0.00 16.43 5.85 6.33 9.18 4.82 16.66 58.34 1.53 0.00 7.48 12.05 4.78 3.33 23 ER2c ExonRegion 0 18.62 41.69 40.16 11.89 8.51 21.00 15.11 28.16 15.92 12.47 115.21 82.36 80.97 102.39 74.65 142.20 250.61 61.75 10.29 55.69 58.37 56.36 59.05 24 E2_Ac KnownBoundary 0 35.49 23.88 47.87 24.37 3.99 11.47 1.77 27.40 25.69 13.51 89.29 38.56 13.15 82.88 55.38 135.26 219.92 65.29 4.05 65.00 57.33 52.66 37.56 25 ER2d ExonRegion 0 17.13 20.46 41.69 18.04 16.75 27.20 9.33 23.05 22.75 18.76 167.32 108.22 91.26 165.44 99.70 322.37 379.77 150.10 27.03 64.43 54.71 84.69 91.89 26 E2_Db NovelBoundary 0 0.00 3.29 14.04 4.06 0.00 0.00 1.77 8.13 8.04 0.00 17.06 6.30 15.10 19.54 4.45 31.19 24.87 10.65 3.86 9.65 22.43 2.76 12.63 27 E2b_E5a KnownJunction 0 17.71 9.41 23.74 27.10 29.20 36.00 15.06 18.20 16.58 14.94 183.94 75.02 87.66 191.71 72.93 358.97 379.24 146.58 29.55 50.62 52.70 73.73 107.05 28 I2 Intron 0 2.52 2.26 23.98 2.96 2.26 0.92 2.95 15.13 10.25 1.25 19.08 27.55 17.88 7.85 4.50 26.82 37.90 14.36 5.26 4.98 5.33 4.80 8.46 29 I2_SR1 SilentIntronRegion 0 2.52 2.27 24.02 2.97 2.26 0.92 2.95 15.16 10.26 1.25 19.10 27.59 17.91 7.86 4.50 26.86 37.96 14.38 5.27 4.99 5.34 4.81 8.47 30 E3_Aa NovelBoundary 0 7.41 5.66 45.42 1.63 3.14 2.33 5.83 10.43 12.36 0.00 17.58 36.61 25.49 9.83 0.00 32.21 44.32 9.20 18.35 0.00 2.90 6.25 24.41 31 ER3a ExonRegion 0 2.71 4.18 23.30 2.53 1.93 0.50 3.13 11.20 10.38 0.93 18.04 31.32 12.58 9.34 6.07 19.84 27.88 7.30 3.25 6.03 5.20 3.89 9.22 32 E3_Ab KnownBoundary 0 0.00 9.54 26.40 1.83 0.00 0.00 0.00 1.85 0.00 0.00 7.11 11.70 13.64 2.53 0.00 3.93 8.32 5.68 3.86 5.18 0.00 3.12 11.87 33 ER3b ExonRegion 0 1.75 2.50 7.42 0.77 0.14 0.00 1.09 0.39 0.00 0.50 2.07 6.91 7.24 4.59 1.83 4.28 6.43 2.40 2.24 1.57 0.08 2.78 6.44 34 E3_Da NovelBoundary 0 3.78 6.12 23.77 3.06 7.81 8.69 6.18 19.18 10.01 1.29 7.79 12.00 13.31 9.36 0.00 28.37 22.16 10.28 0.00 5.75 2.41 9.06 3.76 35 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 I3_AR2 ActiveIntronRegion 1 5.14 4.15 38.30 4.68 3.52 0.20 3.29 16.82 12.14 0.64 21.84 19.05 7.68 10.92 10.17 25.39 27.17 7.53 5.57 7.40 2.95 2.87 8.48 37 I3_SR1 SilentIntronRegion 0 2.39 5.50 35.55 4.84 3.90 1.11 3.43 15.63 9.40 1.65 11.38 28.59 16.48 6.25 9.92 12.91 14.11 2.33 0.61 5.59 2.37 3.08 5.90 38 I3_AR4 ActiveIntronRegion 1 3.17 6.42 5.73 12.57 1.33 0.51 1.82 2.73 1.85 1.65 0.26 14.66 19.88 1.07 2.84 5.94 4.87 2.79 0.74 1.92 0.36 1.42 3.41 39 ER4a ExonRegion 0 0.00 0.00 1.55 0.00 0.76 0.00 1.13 1.46 2.61 0.00 1.66 8.30 6.80 1.52 1.18 6.82 2.81 1.61 0.00 2.41 0.62 1.81 8.29 40 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER5a ExonRegion 0 15.76 17.14 18.62 15.40 12.16 23.55 8.99 14.95 13.38 9.95 133.57 58.82 50.78 135.76 90.76 266.47 305.21 113.87 21.09 37.10 41.36 73.19 98.09 42 E5a_E6a KnownJunction 1 9.85 19.01 22.15 13.35 17.23 5.22 13.25 9.53 6.37 12.97 119.93 49.22 20.13 140.44 65.52 134.32 379.34 69.39 13.08 52.86 47.26 42.56 79.81 43 ER6a ExonRegion 0 34.84 25.98 39.38 18.43 28.61 26.28 15.68 20.83 14.12 9.91 145.38 60.23 44.51 173.13 124.57 282.27 304.71 91.42 17.65 52.17 42.61 97.05 93.90 44 E6_Da KnownBoundary 0 25.34 28.02 31.05 18.95 10.70 10.68 21.55 15.98 13.95 7.44 103.97 42.61 53.08 144.86 123.99 267.37 211.69 72.05 14.12 55.54 35.65 102.38 91.59 45 ER6b ExonRegion 0 46.08 45.71 33.29 27.49 27.76 21.29 21.79 18.44 12.84 8.57 106.74 121.40 95.05 124.27 108.47 261.11 196.56 42.66 20.10 41.02 15.04 144.64 82.99 46 E6_Db KnownBoundary 1 88.68 70.25 29.74 31.86 18.42 18.17 51.98 22.10 12.88 14.99 52.17 172.56 286.34 154.63 158.85 241.48 140.25 38.26 24.94 27.42 3.15 251.24 90.57 47 ER6c ExonRegion 1 35.93 29.27 16.03 19.61 29.49 16.05 12.46 18.54 7.00 9.29 62.77 115.24 99.64 74.59 80.39 127.11 131.60 17.29 10.28 27.51 7.85 79.03 38.65 48 E6_Dc KnownBoundary 0 3.56 6.64 0.00 0.00 0.00 2.95 0.00 0.00 0.00 0.00 0.00 12.90 6.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 49 ER6d ExonRegion 0 5.92 3.58 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 10.42 6.52 3.41 1.03 0.00 0.00 0.00 0.00 0.29 1.90 1.38 2.44