Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TAF5L Gene 0 12.76 11.69 10.54 15.04 13.43 14.89 13.71 15.67 13.24 19.21 45.81 36.75 44.78 40.45 20.44 33.48 30.19 21.88 15.66 27.16 17.49 18.36 13.36 2 366674 Transcript 0 1.17 0.00 3.07 3.96 0.74 1.02 4.61 5.56 4.15 5.72 4.49 3.32 3.31 3.91 5.35 10.13 6.21 8.50 0.88 13.71 5.33 1.17 4.88 3 258281 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 477957 Transcript 0 0.00 1.35 1.34 0.00 3.30 1.09 3.00 1.64 1.34 1.69 12.60 16.63 10.93 6.89 3.66 4.35 4.04 0.88 0.03 7.60 1.13 8.39 0.00 5 366675 Transcript 0 10.80 6.60 5.30 8.17 10.63 3.98 9.03 9.98 8.60 7.22 25.95 31.58 30.26 15.58 8.75 13.58 9.15 6.63 7.71 13.16 5.08 9.66 6.41 6 366676 Transcript 1 38.94 12.20 1.72 3.00 2.68 3.67 4.37 7.26 2.96 7.91 2.90 16.88 7.04 4.06 6.09 5.65 2.97 1.85 0.00 1.91 0.00 0.00 0.00 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 0 0.68 2.39 0.49 0.10 0.00 3.29 0.53 1.91 0.76 2.80 3.95 0.57 1.72 2.58 2.09 3.02 2.23 1.58 2.86 4.04 3.18 0.00 4.15 9 E1_Ac KnownBoundary 0 6.08 3.09 4.49 4.59 0.00 9.03 2.08 9.65 4.28 12.30 4.74 0.00 5.84 8.95 4.45 10.77 8.42 7.67 12.42 22.82 14.09 0.00 3.24 10 ER1c ExonRegion 0 4.78 4.38 1.15 3.86 0.31 5.18 4.55 7.75 2.35 9.09 27.29 9.73 16.72 30.09 15.50 27.34 24.62 10.13 16.30 18.02 10.97 6.28 2.28 11 E1a_E2a KnownJunction 0 78.61 2.57 3.40 14.62 7.81 11.98 6.45 22.55 8.56 18.24 89.44 18.16 46.43 86.59 45.74 128.77 57.60 23.79 21.55 53.37 13.84 40.05 0.00 12 ER2a ExonRegion 0 10.58 6.10 2.45 15.33 2.68 10.54 8.27 25.93 11.73 18.06 70.55 24.89 42.21 84.05 59.48 68.36 62.72 24.02 18.32 52.66 14.32 33.34 5.87 13 ER2b ExonRegion 0 25.53 10.15 15.35 26.26 7.38 19.35 19.16 47.91 21.42 60.22 124.77 49.04 67.62 97.65 70.64 64.08 78.68 31.48 28.83 80.75 49.86 53.83 16.56 14 E2_Da KnownBoundary 0 0.00 0.00 4.79 5.13 0.00 0.00 6.76 13.14 3.07 9.27 4.69 12.30 0.00 2.41 0.00 3.93 3.93 7.34 0.00 9.08 2.53 0.00 0.00 15 E2a_E3a KnownJunction 0 0.00 19.80 27.26 49.81 7.81 39.98 37.67 49.45 35.59 84.99 185.15 75.92 93.83 160.28 93.08 105.78 151.94 75.57 30.49 98.75 63.88 46.11 16.39 16 ER2c ExonRegion 0 1.17 0.00 3.07 3.96 0.74 1.02 4.61 5.56 4.15 5.72 4.49 3.32 3.31 3.91 5.35 10.13 6.21 8.50 0.88 13.71 5.33 1.17 4.88 17 E2_Db NovelBoundary 0 13.78 3.35 1.24 5.39 0.00 0.00 5.70 20.70 4.69 1.67 5.00 11.85 13.15 2.47 0.00 6.84 11.78 14.22 8.56 10.99 7.72 3.06 3.93 18 I2_AR2 ActiveIntronRegion 0 8.32 7.08 3.42 1.57 0.00 7.27 6.12 2.00 3.30 5.52 3.27 5.97 19.33 3.58 3.80 8.46 9.33 8.38 1.65 20.87 6.92 0.72 5.27 19 E3_Aa NovelBoundary 0 2.89 10.00 11.97 7.36 3.65 11.24 14.84 3.98 12.27 6.63 6.69 24.61 14.12 17.19 4.45 18.11 3.46 33.29 0.00 17.77 2.78 7.78 7.60 20 ER3a ExonRegion 0 44.45 41.23 45.01 46.60 36.44 45.64 41.28 64.84 55.90 100.41 219.15 108.61 196.04 198.51 100.38 194.89 180.13 120.65 82.36 119.31 93.29 84.49 55.57 21 E3_Da NovelBoundary 0 0.00 0.00 6.68 3.20 10.44 0.00 4.24 0.00 1.53 0.00 2.32 0.00 6.82 12.95 0.00 0.00 13.09 1.66 0.00 14.64 0.00 0.00 0.00 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 7.33 0.00 0.00 1.58 14.58 30.76 0.00 7.65 0.00 12.65 0.00 2.57 0.00 9.20 0.00 13.78 0.00 23 E3a_E6a KnownJunction 0 39.64 49.93 59.40 71.99 31.58 49.80 57.63 80.30 79.46 104.52 203.26 85.38 187.65 143.51 107.55 181.92 161.85 106.99 162.08 111.47 88.34 99.20 59.92 24 I3 Intron 0 1.81 1.38 1.46 1.26 2.14 1.25 2.86 2.74 2.18 1.01 2.91 11.99 15.82 3.82 2.20 3.25 5.27 1.42 1.41 5.66 0.20 1.17 0.78 25 I3_SR1 SilentIntronRegion 0 1.82 1.38 1.46 1.26 2.14 1.25 2.86 2.74 2.18 1.01 2.92 12.00 15.83 3.83 2.20 3.25 5.27 1.42 1.41 5.67 0.20 1.17 0.78 26 ER4a ExonRegion 0 0.00 0.82 0.81 0.00 2.93 4.35 4.66 1.34 0.84 1.46 13.75 24.72 18.08 14.09 5.85 4.75 2.77 0.95 0.10 12.63 1.49 10.01 0.00 27 E4_Da NovelBoundary 1 7.56 0.00 1.39 2.93 6.79 8.01 6.27 0.00 1.79 0.00 7.00 32.86 26.78 2.24 0.00 3.25 7.85 3.32 3.48 3.26 0.00 0.00 3.24 28 E4a_E5a KnownJunction 0 0.00 3.35 3.49 0.00 8.15 0.00 0.00 4.11 3.56 3.06 15.48 6.00 7.63 3.00 5.07 0.00 9.54 0.00 0.00 6.14 2.53 7.96 0.00 29 E4a_E6a NovelJunction 0 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 1.24 0.00 12.90 6.30 0.00 0.00 0.00 4.36 8.70 7.21 0.00 11.19 0.00 6.06 0.00 30 I4 Intron 0 2.72 0.96 1.48 2.06 4.16 1.98 5.01 2.61 1.24 1.16 9.81 12.32 14.76 7.28 1.89 5.03 10.05 2.48 3.23 8.63 1.93 2.11 2.98 31 I4_SR1 SilentIntronRegion 0 2.73 0.96 1.49 2.07 4.17 1.99 5.03 2.62 1.25 1.16 9.83 12.34 14.80 7.30 1.89 5.04 10.07 2.49 3.24 8.66 1.94 2.12 2.99 32 E5_Aa NovelBoundary 0 3.48 0.00 0.00 0.00 4.07 7.38 6.23 2.09 1.50 7.28 2.47 18.76 13.64 19.37 4.82 7.18 14.12 2.11 0.00 11.82 0.00 4.90 0.00 33 ER5a ExonRegion 0 0.00 1.23 1.05 0.00 2.12 0.00 0.00 1.13 0.98 0.67 6.61 5.03 18.00 2.79 3.71 0.00 3.84 0.00 0.00 2.42 0.51 1.79 0.00 34 E5_Da NovelBoundary 0 3.56 8.02 1.33 7.82 0.00 8.69 4.11 5.09 1.79 1.05 24.27 44.26 13.96 18.07 15.58 14.53 25.34 13.39 3.86 2.94 0.00 4.84 11.52 35 ER6a ExonRegion 0 42.31 55.51 54.92 77.48 59.15 83.56 61.66 68.61 61.92 97.48 215.99 150.12 211.34 211.68 100.10 173.11 161.97 125.54 78.93 133.92 100.21 90.18 70.45 36 E6_Da KnownBoundary 0 18.45 16.05 17.18 27.10 16.04 2.50 12.76 32.61 25.52 4.22 64.28 41.86 49.19 26.25 0.00 28.37 21.88 26.94 13.08 34.83 17.54 34.47 34.06 37 E6a_E7a KnownJunction 0 9.56 49.33 43.02 38.49 90.32 130.10 69.87 23.21 30.73 69.33 133.98 55.22 88.47 135.62 68.11 77.16 106.12 69.97 41.60 66.35 56.71 41.46 32.95 38 ER6b ExonRegion 0 10.80 6.60 5.30 8.17 10.63 3.98 9.03 9.98 8.60 7.22 25.95 31.58 30.26 15.58 8.75 13.58 9.15 6.63 7.71 13.16 5.08 9.66 6.41 39 E6_Db NovelBoundary 0 12.67 3.35 3.67 7.03 17.15 0.00 3.67 4.11 0.00 10.74 4.69 5.85 0.00 7.18 4.45 3.25 0.00 0.00 3.95 5.62 0.00 8.14 3.59 40 E7_Aa NovelBoundary 0 13.19 0.00 2.81 0.00 11.46 21.41 8.52 5.63 7.67 2.82 4.79 0.00 6.82 12.13 4.45 4.19 0.00 0.00 0.00 0.00 11.31 5.76 4.10 41 ER7a ExonRegion 0 4.74 4.24 2.11 3.04 3.03 7.21 3.77 2.59 2.07 4.81 7.01 5.19 4.42 9.99 4.28 7.03 7.45 4.86 2.80 4.17 2.58 2.71 2.92 42 ER7b ExonRegion 1 38.94 12.20 1.72 3.00 2.68 3.67 4.37 7.26 2.96 7.91 2.90 16.88 7.04 4.06 6.09 5.65 2.97 1.85 0.00 1.91 0.00 0.00 0.00