Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MOSC2 Gene 0 30.80 12.59 17.87 27.06 18.19 15.55 10.66 13.84 20.89 21.63 0.30 7.96 0.00 0.48 6.88 0.00 0.13 2.82 2.12 17.45 1.89 15.22 9.35 2 469583 Transcript 0 0.01 0.80 0.11 0.01 0.09 0.04 0.00 0.05 0.26 0.03 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.13 3 359316 Transcript 0 0.00 0.00 5.03 1.50 0.00 0.00 0.00 0.00 3.59 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 366914 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 366913 Transcript 0 41.42 14.79 18.31 26.08 17.78 15.64 12.87 17.17 22.28 20.80 0.00 9.71 0.00 0.55 4.25 0.00 1.78 0.41 0.31 15.73 0.00 15.37 9.38 6 425560 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 496078 Transcript 0 4.37 1.82 4.87 8.54 1.41 11.30 1.56 0.45 4.17 4.83 1.02 2.64 0.00 0.24 1.48 0.00 0.00 4.02 0.56 8.12 0.39 2.18 1.03 8 472447 Transcript 0 12.61 3.80 5.64 14.47 6.78 11.13 7.42 4.67 11.77 8.34 0.02 4.75 0.00 0.00 5.45 0.00 0.09 1.75 0.00 10.36 1.18 5.78 4.22 9 ER1a ExonRegion 0 0.05 0.00 0.44 0.00 0.36 0.16 0.00 0.00 1.02 0.10 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.52 10 E1_Ab KnownBoundary 0 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 1.79 1.50 0.00 0.00 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 0 3.81 0.00 3.94 1.51 3.46 6.57 0.00 1.01 5.32 2.28 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.03 1.42 7.56 0.00 2.63 7.05 12 E1_Ac KnownBoundary 0 3.26 0.00 6.33 1.50 3.74 5.28 0.00 2.55 8.62 2.26 0.00 0.00 0.00 0.00 4.45 0.00 0.00 1.58 4.80 9.08 0.00 3.12 11.44 13 ER1c ExonRegion 0 4.52 1.98 7.26 5.11 1.49 4.09 2.93 4.97 5.11 6.02 0.00 0.00 0.00 0.00 2.93 0.00 0.00 3.30 1.88 12.42 0.96 7.46 8.42 14 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E3a KnownJunction 0 13.56 12.89 19.99 11.62 19.61 14.03 5.70 17.09 9.78 22.62 0.00 0.00 0.00 0.00 5.19 0.00 0.00 16.13 0.00 23.33 0.00 22.35 11.35 16 ER2a ExonRegion 0 0.00 3.19 0.00 0.02 0.00 0.00 0.00 0.19 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E3_Ab NovelBoundary 0 16.67 11.84 25.22 8.89 3.90 2.73 10.86 13.14 22.11 32.21 0.00 11.10 0.00 0.00 18.54 0.00 0.00 10.53 9.41 33.05 0.00 13.10 15.62 19 ER3a ExonRegion 0 12.05 10.40 19.61 9.91 8.03 11.14 5.19 17.15 17.96 24.75 0.00 4.50 0.00 0.00 11.94 0.00 0.00 10.38 4.90 27.50 0.00 16.43 16.26 20 ER3b ExonRegion 0 17.65 10.19 24.51 20.47 7.78 8.23 5.81 20.47 21.78 33.55 1.12 9.84 0.00 0.00 18.73 0.00 0.00 4.62 10.71 33.05 7.66 25.43 22.63 21 E3_Da KnownBoundary 0 19.63 9.87 39.44 33.70 4.33 24.08 9.89 23.33 19.73 38.60 0.00 6.30 0.00 0.00 4.45 0.00 0.00 4.39 18.07 59.12 6.18 22.53 34.83 22 ER3c ExonRegion 0 20.11 6.10 25.73 20.03 9.63 17.39 10.70 26.76 21.84 27.01 0.55 8.08 0.00 0.00 12.43 0.00 0.00 2.28 6.26 31.06 7.64 24.48 30.83 23 E3_Db NovelBoundary 0 3.26 3.35 8.01 11.19 0.00 2.33 6.40 2.30 8.36 12.79 0.00 6.60 0.00 0.00 0.00 0.00 0.00 9.12 8.66 35.47 0.00 10.96 0.00 24 E3b_E5a KnownJunction 0 29.93 9.01 13.84 19.54 41.43 21.07 15.99 24.60 27.37 11.28 2.37 0.00 0.00 0.00 6.18 0.00 0.00 4.02 4.80 11.89 0.00 18.86 18.35 25 E4_Aa NovelBoundary 0 3.78 0.00 5.20 17.21 0.00 23.91 1.99 1.77 7.47 8.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.64 4.24 11.19 2.41 8.14 8.71 26 ER4a ExonRegion 0 5.85 3.65 7.25 6.96 2.82 9.93 1.31 0.91 5.26 7.16 2.04 5.28 0.00 0.47 2.96 0.00 0.00 5.68 1.12 10.42 0.78 4.37 2.07 27 E4_Da NovelBoundary 0 2.96 5.26 6.18 5.36 12.22 2.90 13.12 4.19 13.34 12.30 4.42 0.00 0.00 0.00 0.00 0.00 0.00 3.69 0.00 14.89 0.00 5.39 12.21 28 E4a_E5a KnownJunction 0 2.89 0.00 2.48 10.12 0.00 12.66 1.81 0.00 3.07 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 5.82 0.00 0.00 0.00 29 ER5a ExonRegion 0 33.88 14.63 18.37 31.82 22.68 18.90 20.28 23.97 27.68 28.64 0.61 9.10 0.00 0.64 16.62 0.00 0.00 5.35 3.81 22.77 6.45 20.17 19.98 30 E5_Da KnownBoundary 0 67.57 17.56 21.02 42.85 16.04 38.50 23.45 20.87 42.53 27.21 0.00 18.91 0.00 0.00 17.80 0.00 0.00 2.07 26.17 27.10 13.90 16.29 11.95 31 ER5b ExonRegion 0 51.67 29.81 20.28 34.10 29.77 29.67 8.01 21.45 45.96 24.60 1.76 15.08 0.00 1.04 6.27 0.00 0.00 6.86 10.35 22.15 6.14 21.43 25.17 32 E5b_E6a KnownJunction 0 46.90 31.70 25.99 36.06 44.06 24.99 0.00 17.33 41.55 24.20 0.00 0.00 0.00 0.00 8.78 0.00 0.00 11.52 4.80 24.54 2.78 28.11 30.30 33 ER6a ExonRegion 0 41.56 13.25 20.69 32.82 18.56 25.75 11.81 18.76 28.94 29.17 0.59 13.39 0.00 0.00 13.52 0.00 0.00 4.48 1.17 23.00 4.61 21.59 14.39 34 E6a_E8b KnownJunction 0 38.97 11.51 14.22 32.96 59.51 26.63 11.66 12.12 13.25 19.64 2.05 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.88 0.00 23.15 3.67 35 E6a_E10a KnownJunction 0 0.00 0.00 5.03 1.50 0.00 0.00 0.00 0.00 3.59 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E8_Aa NovelBoundary 0 6.96 3.35 1.33 4.33 0.00 10.51 12.28 6.12 3.33 5.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.95 0.00 10.78 0.00 38 ER8a ExonRegion 0 4.27 1.07 1.23 1.24 2.02 10.58 0.77 0.97 2.93 1.41 0.03 0.15 0.00 0.00 0.36 0.00 0.00 0.00 0.00 6.38 0.04 4.09 1.80 39 E8_Ab KnownBoundary 0 7.56 3.35 1.77 3.60 4.33 5.79 2.25 2.22 4.43 2.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.26 0.00 4.78 7.60 40 ER8b ExonRegion 0 37.99 16.44 15.95 37.16 47.29 27.39 14.02 19.98 28.95 32.77 0.22 18.38 0.00 1.41 10.42 0.00 0.38 6.09 0.00 30.07 3.61 26.78 28.55 41 E8_Da KnownBoundary 0 22.08 6.05 12.42 28.60 0.00 2.73 4.50 18.32 20.69 17.65 0.00 0.00 0.00 2.47 4.45 0.00 0.00 10.78 0.00 24.35 5.81 14.88 18.78 42 E8a_E8c KnownJunction 0 45.34 11.45 13.78 16.18 15.96 16.75 12.54 17.21 18.17 16.65 0.00 6.00 0.00 0.00 5.81 0.00 3.55 0.00 0.00 16.23 0.00 17.02 16.39 43 ER8c ExonRegion 0 14.12 8.22 9.72 26.85 2.98 4.19 4.82 12.57 19.80 20.63 0.00 8.23 0.00 0.72 12.56 0.00 0.00 5.38 0.00 18.27 5.73 4.02 3.82 44 E8_Db KnownBoundary 0 21.11 6.45 8.25 20.38 0.00 8.63 7.86 6.41 16.58 15.66 0.00 18.91 0.00 0.00 10.38 0.00 0.00 0.00 0.00 12.27 3.03 3.00 4.35 45 E8_Ac KnownBoundary 0 13.78 3.09 6.62 15.45 17.06 7.67 15.55 4.52 10.04 1.64 0.00 0.00 0.00 0.00 9.64 0.00 0.00 4.52 0.00 6.46 0.00 6.25 4.18 46 ER8d ExonRegion 0 20.94 6.53 10.06 27.69 11.55 11.68 14.08 8.37 20.61 15.27 0.00 9.34 0.00 0.00 10.54 0.00 0.17 3.50 0.00 14.33 2.32 7.46 6.65 47 ER8e ExonRegion 0 50.38 12.23 13.32 41.14 16.13 19.11 14.30 21.13 29.16 37.83 0.00 17.07 0.00 0.37 14.47 0.00 2.00 2.81 0.00 29.25 0.00 26.59 13.32 48 E8_Dc NovelBoundary 0 2.82 0.00 0.00 5.86 0.00 2.44 1.63 8.95 16.20 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 7.86 0.00 0.00 7.43 49 E8c_E9a KnownJunction 0 11.19 9.93 13.19 53.04 14.26 4.60 16.56 16.76 27.31 46.52 0.00 6.30 0.00 2.77 13.35 0.00 0.00 2.57 0.00 21.16 0.00 23.15 18.18 50 ER9a ExonRegion 0 44.21 20.41 22.25 43.64 32.35 26.93 16.72 17.03 36.16 32.94 0.64 4.05 0.00 0.81 12.65 0.00 1.09 1.62 4.19 27.08 2.72 26.00 14.17 51 E9_Da NovelBoundary 0 22.45 11.31 4.44 7.52 0.00 23.91 11.31 9.49 4.11 7.68 0.00 18.76 0.00 2.30 0.00 0.00 0.00 0.00 0.00 2.49 0.00 23.64 0.00 52 E9a_E10a KnownJunction 0 51.49 24.67 34.56 50.51 16.55 28.45 11.57 8.87 34.81 31.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.19 5.93 29.02 11.27 53 I9 Intron 0 14.00 4.78 7.35 8.10 6.39 5.94 5.28 5.27 5.46 5.24 0.00 4.05 0.00 0.22 1.26 0.00 0.00 1.54 0.54 6.60 0.83 5.19 2.20 54 I9_SR2 SilentIntronRegion 0 16.40 5.34 8.49 9.09 8.44 6.67 5.69 5.65 5.46 5.76 0.00 5.06 0.00 0.21 1.72 0.00 0.00 1.59 0.53 7.16 1.11 5.43 2.79 55 I9_AR3 ActiveIntronRegion 0 21.02 4.32 23.15 16.86 4.65 6.31 6.39 8.76 9.32 8.63 0.00 7.67 0.00 0.00 0.00 0.00 0.00 3.24 0.00 15.34 0.00 4.53 5.87 56 I9_AR4 ActiveIntronRegion 0 17.09 2.34 8.58 5.16 7.26 5.39 2.43 4.06 5.11 8.15 0.00 6.63 0.00 0.00 0.00 0.00 0.00 2.07 2.46 5.54 0.00 2.87 3.87 57 E10_Aa NovelBoundary 0 93.42 12.23 8.93 25.47 16.38 16.24 28.79 6.94 7.06 9.94 0.00 12.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.39 2.66 8.27 11.44 58 ER10a ExonRegion 0 79.54 24.73 40.05 61.07 53.33 34.81 24.50 21.94 34.64 39.67 0.00 11.15 0.00 0.43 9.25 0.00 0.00 2.63 1.96 21.83 1.80 30.70 10.49 59 E10_Da KnownBoundary 0 120.84 26.38 30.16 54.94 53.23 32.82 30.69 21.32 35.91 36.37 0.00 6.75 0.00 3.00 4.45 0.00 0.00 4.31 3.95 9.14 0.00 17.08 3.59 60 ER10b ExonRegion 0 87.61 33.88 31.36 50.45 54.28 28.55 27.83 23.24 37.25 42.37 0.00 9.35 0.00 0.64 8.65 0.00 0.00 2.61 4.72 15.20 0.00 13.25 5.77 61 E10_Db KnownBoundary 0 119.06 24.34 31.81 46.11 33.28 30.49 33.34 16.96 31.74 46.93 0.00 31.36 0.00 0.00 4.45 0.00 0.00 2.11 3.67 26.27 0.00 15.06 0.00 62 ER10c ExonRegion 0 37.51 18.14 22.85 35.97 19.61 14.53 13.20 17.14 26.38 24.94 0.00 13.42 0.00 1.11 2.69 0.00 0.00 0.82 0.62 15.22 0.00 13.71 2.37