Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TBCE Gene 0 62.19 120.28 93.38 115.46 86.90 104.22 79.55 60.50 69.29 95.24 98.69 108.31 84.73 101.45 92.87 84.04 88.15 73.90 66.82 127.51 55.39 69.47 57.05 2 366601 Transcript 0 0.00 1.30 1.83 1.36 0.00 4.06 0.11 0.06 2.82 1.72 1.45 0.00 3.52 1.22 0.00 2.06 0.00 1.33 0.00 2.99 0.00 1.04 2.45 3 406207 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 482230 Transcript 0 2.12 0.00 3.06 0.00 0.00 0.00 1.32 0.00 0.00 1.15 1.93 0.00 0.00 1.62 0.00 2.97 0.00 0.00 0.00 2.13 0.00 2.08 0.00 5 472011 Transcript 0 2.82 6.51 12.51 10.52 4.16 2.73 0.00 14.33 17.16 11.42 15.16 0.00 8.28 21.84 4.45 15.30 4.49 18.41 4.52 26.46 14.52 9.19 26.29 6 461651 Transcript 0 3.18 4.57 4.59 5.95 3.52 7.66 1.57 4.60 12.66 5.09 3.81 1.20 3.44 6.58 4.01 4.87 1.85 3.19 1.75 5.22 5.83 2.43 3.40 7 465463 Transcript 0 38.35 40.08 32.09 46.67 47.84 43.18 38.51 17.47 21.32 20.45 39.86 65.12 60.02 41.13 47.95 40.81 36.97 22.66 40.33 53.35 37.60 48.33 33.61 8 ER1a ExonRegion 0 0.00 1.58 0.59 0.00 0.00 4.45 0.22 0.13 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 1.75 0.00 3.86 0.00 1.04 0.49 9 E1_Ab KnownBoundary 0 0.00 3.03 0.00 0.00 0.00 8.57 0.00 0.00 4.40 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 3.26 0.00 3.12 0.00 10 E1_Ac KnownBoundary 0 0.00 3.09 1.83 0.00 0.00 23.05 2.25 0.00 5.01 0.00 0.00 0.00 0.00 2.30 0.00 8.72 0.00 2.11 0.00 9.46 0.00 0.00 4.35 11 ER1b ExonRegion 0 0.88 4.91 1.23 0.00 0.00 18.95 2.21 1.73 9.47 0.00 0.00 0.00 0.00 1.22 0.00 9.91 0.00 5.54 0.00 9.22 0.00 2.08 2.94 12 E1_Ad KnownBoundary 1 98.68 158.13 36.52 23.44 157.56 424.07 348.97 4.56 25.55 39.22 115.66 0.00 0.00 113.31 64.28 118.77 116.41 95.47 108.80 97.73 109.22 20.88 103.55 13 ER1c ExonRegion 1 36.90 59.79 20.95 9.59 52.44 182.46 136.28 1.73 19.64 20.80 45.94 0.00 0.00 48.94 28.34 55.68 49.29 50.51 49.80 48.51 52.45 11.32 51.20 14 ER1d ExonRegion 1 86.95 170.61 51.89 60.63 163.28 331.47 247.69 30.51 51.62 102.85 164.38 6.80 17.13 135.13 123.57 164.50 135.27 193.22 144.06 192.83 112.12 40.27 151.21 15 E1_Da KnownBoundary 0 3.33 6.05 3.64 8.02 19.19 21.18 16.16 9.65 3.59 11.36 11.48 0.00 0.00 12.60 10.63 16.58 8.88 7.50 16.57 14.38 0.00 2.63 15.62 16 E1a_E2a KnownJunction 1 90.91 149.64 54.79 93.86 196.26 247.87 199.66 55.04 66.15 141.03 143.04 7.05 13.96 62.10 48.58 163.46 125.29 223.56 154.92 248.51 89.95 31.47 155.96 17 ER1e ExonRegion 0 0.62 3.35 7.25 4.88 5.13 5.23 3.25 3.85 1.72 6.12 2.66 0.00 4.10 3.35 2.12 7.37 2.27 4.58 3.92 3.68 0.64 0.52 6.42 18 E1b_E2a KnownJunction 0 0.00 3.35 7.84 0.00 0.00 0.00 0.00 0.00 0.00 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 19 ER2a ExonRegion 1 21.47 36.74 46.45 56.37 38.69 41.20 34.75 43.74 50.58 101.37 124.52 27.63 9.38 62.40 33.75 49.14 106.08 82.91 52.30 95.70 80.90 16.51 46.65 20 E2a_E3a KnownJunction 1 13.11 28.09 76.37 65.36 7.98 9.77 14.44 46.78 55.06 128.70 137.46 57.02 18.67 200.48 104.09 63.23 121.65 116.19 85.37 213.55 80.13 32.27 64.36 21 E2a_E4a KnownJunction 0 2.82 6.51 12.51 10.52 4.16 2.73 0.00 14.33 17.16 11.42 15.16 0.00 8.28 21.84 4.45 15.30 4.49 18.41 4.52 26.46 14.52 9.19 26.29 22 ER3a ExonRegion 0 9.01 38.16 57.75 75.41 18.60 39.05 18.10 44.02 54.42 109.52 91.71 45.38 41.05 139.67 99.53 141.65 78.95 142.75 77.05 163.28 52.45 41.60 104.20 23 E3a_E4a KnownJunction 0 7.56 77.62 48.19 70.59 53.57 124.30 39.00 24.52 53.65 79.54 82.13 69.47 11.85 101.42 67.99 116.89 66.20 99.32 24.28 98.62 55.54 31.17 78.53 24 ER4a ExonRegion 0 40.76 119.14 82.59 88.93 110.67 212.19 152.11 50.89 79.32 98.44 123.66 117.17 66.09 117.52 69.60 60.35 96.21 77.40 47.16 144.19 50.93 56.37 45.82 25 E4_Da NovelBoundary 0 7.04 8.29 13.72 19.08 8.49 0.00 22.43 13.84 22.80 23.42 0.00 0.00 0.00 4.94 4.45 22.39 26.18 11.81 8.38 29.98 12.11 5.33 4.01 26 E4a_E6a KnownJunction 0 9.93 2.70 0.00 6.83 7.47 7.78 10.86 2.22 1.68 0.00 4.69 0.00 0.00 0.00 0.00 4.36 4.58 2.07 0.00 2.75 2.78 0.00 0.00 27 E4a_E6b KnownJunction 0 58.01 87.42 69.69 97.99 49.32 58.26 72.74 36.15 63.51 97.16 71.54 150.80 83.27 129.91 116.82 78.61 52.08 54.51 100.99 136.65 30.09 83.58 53.10 28 E4a_E7a NovelJunction 0 0.00 0.00 3.40 14.58 3.40 2.21 3.97 0.00 0.00 1.32 0.00 6.00 0.00 0.00 16.32 0.00 0.00 2.57 0.00 0.00 0.00 5.63 0.00 29 I4_SR1 SilentIntronRegion 0 9.15 16.97 9.59 19.80 11.76 11.96 16.54 10.37 13.87 11.78 5.01 12.49 16.50 4.38 6.76 14.15 8.62 10.95 4.28 18.87 7.37 4.66 10.40 30 I4_AR2 ActiveIntronRegion 0 14.34 23.76 11.75 24.48 23.72 14.03 18.78 12.96 13.73 14.08 2.32 5.41 13.97 3.63 12.70 6.29 9.46 13.13 9.42 15.27 7.31 3.26 9.86 31 E5_Aa NovelBoundary 0 3.19 2.83 12.89 40.55 15.37 18.23 0.00 4.23 8.33 6.80 0.00 0.00 0.00 10.18 4.45 15.81 4.68 13.14 0.00 6.20 7.97 3.12 7.77 32 ER5a ExonRegion 0 7.44 5.11 2.71 5.13 1.35 2.78 1.34 0.14 6.46 6.03 0.98 1.80 12.12 4.33 2.07 3.21 1.93 2.93 1.61 5.37 7.72 1.05 1.48 33 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E6_Aa NovelBoundary 0 7.11 11.77 10.67 13.65 27.93 18.68 32.95 7.48 14.06 6.80 0.00 0.00 0.00 7.36 4.45 11.96 13.18 14.51 6.96 6.14 6.24 11.70 8.62 35 ER6a ExonRegion 0 6.16 9.45 3.74 20.13 22.11 9.59 31.43 13.34 11.55 9.74 4.48 9.80 1.40 10.54 12.16 9.54 10.42 16.53 7.60 11.76 6.53 10.05 7.32 36 E6_Ab KnownBoundary 0 0.00 18.75 8.84 28.73 19.78 8.35 47.83 24.81 19.53 17.43 2.16 18.61 0.00 9.12 4.45 13.07 0.00 17.58 4.14 24.61 0.00 4.71 17.67 37 ER6b ExonRegion 0 44.25 109.91 79.29 123.26 55.00 53.08 67.13 65.98 70.44 102.84 145.41 179.97 76.91 122.07 84.43 84.94 103.98 89.93 68.01 176.96 68.67 72.99 60.33 38 E6_Da NovelBoundary 1 0.00 12.56 7.07 18.35 7.56 0.00 12.19 10.35 10.07 11.17 0.00 0.00 46.59 4.83 0.00 12.39 7.67 5.72 4.24 8.82 9.02 2.63 4.27 39 E6a_E7a KnownJunction 0 63.20 118.33 77.61 123.06 41.77 79.33 63.42 62.23 66.98 98.26 152.78 202.72 96.26 118.31 72.32 65.11 104.82 55.01 66.64 176.86 50.23 58.48 15.45 40 Ix_AR1 ActiveIntronRegion 0 4.65 5.35 11.68 17.45 7.10 8.14 11.97 11.17 15.60 17.43 4.52 5.64 17.51 4.52 8.27 18.01 12.27 18.19 7.04 26.10 7.11 2.77 11.27 41 ER7a ExonRegion 0 60.34 123.80 103.09 146.25 72.65 120.83 70.13 71.42 83.59 119.44 138.09 187.08 104.87 138.73 119.27 95.46 100.02 102.33 81.70 174.91 65.03 88.88 60.23 42 E7_Da NovelBoundary 0 3.04 0.00 8.10 28.97 3.74 2.33 12.28 20.62 10.24 19.58 9.90 6.30 0.00 3.00 0.00 11.54 3.93 9.29 8.75 6.26 5.93 2.88 8.11 43 E7a_E8a KnownJunction 0 94.31 178.26 107.60 172.04 94.99 157.41 78.04 56.27 74.71 126.12 157.67 144.20 90.09 169.23 123.00 108.18 98.83 96.30 120.76 183.89 87.04 106.85 69.66 44 E8_Aa NovelBoundary 0 21.78 37.10 20.70 34.69 4.07 11.30 17.62 17.87 10.10 15.82 10.21 0.00 14.45 0.00 0.00 0.00 7.85 3.98 8.19 27.87 0.00 16.23 4.35 45 ER8a ExonRegion 0 66.08 149.45 102.74 147.76 74.89 106.53 90.27 84.42 69.85 120.77 112.40 144.34 82.97 142.44 90.61 105.01 85.16 54.40 70.68 172.60 45.24 69.42 59.56 46 E8a_E9a KnownJunction 0 0.00 9.93 10.14 13.52 6.79 15.28 1.68 13.18 28.99 7.36 9.63 0.00 0.00 14.48 8.90 3.59 0.00 3.69 4.80 9.40 7.78 5.69 7.34 47 E8a_E10a KnownJunction 0 69.05 183.78 85.69 115.97 44.82 49.29 60.86 68.43 40.19 112.28 78.18 130.84 82.95 120.49 97.16 51.35 54.98 66.74 35.67 111.86 51.40 75.81 49.08 48 ER9a ExonRegion 0 5.27 3.23 5.52 5.14 5.95 12.59 3.27 5.07 15.19 6.97 4.65 3.01 1.63 7.50 5.08 12.70 5.46 6.14 0.58 6.12 7.83 2.98 4.76 49 E9_Da NovelBoundary 0 16.15 9.21 7.66 19.78 4.33 5.74 0.00 15.07 31.92 14.02 4.21 6.30 0.00 2.47 15.08 3.50 8.42 11.19 4.61 21.16 5.44 5.27 6.74 50 I9 Intron 0 19.97 19.63 15.62 18.04 11.45 7.44 16.55 14.70 18.57 16.12 6.57 13.10 20.45 4.36 5.91 10.11 6.88 13.40 7.34 15.63 10.14 8.45 13.85 51 I9_SR1 SilentIntronRegion 0 20.05 19.71 15.68 18.12 11.49 7.47 16.63 14.76 18.65 16.19 6.60 13.16 20.54 4.38 5.93 10.15 6.91 13.46 7.37 15.70 10.19 8.48 13.91 52 ER10a ExonRegion 0 55.47 177.58 108.60 123.23 78.12 104.03 86.97 60.61 70.14 106.57 114.39 88.95 93.92 106.24 99.66 68.51 88.82 90.20 71.03 132.63 76.50 72.03 43.90 53 E10a_E11a KnownJunction 0 79.94 196.15 109.64 154.26 157.47 216.69 128.20 67.98 93.84 110.30 120.71 97.08 112.01 111.66 100.87 93.74 83.68 87.55 77.84 190.15 49.61 95.46 57.02 54 ER11a ExonRegion 0 81.51 189.25 129.34 165.15 108.87 169.93 104.69 92.74 103.29 155.07 111.89 82.80 115.30 155.27 115.66 116.56 99.44 108.81 91.25 164.03 48.89 104.33 65.80 55 E11a_E12a KnownJunction 0 101.35 198.78 132.25 199.41 74.36 116.92 90.71 95.13 111.11 170.33 106.55 125.59 127.75 139.50 158.35 122.02 115.66 91.99 154.92 188.30 66.84 118.79 87.92 56 ER11b ExonRegion 0 2.12 0.00 3.06 0.00 0.00 0.00 1.32 0.00 0.00 1.15 1.93 0.00 0.00 1.62 0.00 2.97 0.00 0.00 0.00 2.13 0.00 2.08 0.00 57 I11 Intron 0 19.45 15.96 9.21 21.40 12.30 13.57 22.11 17.32 17.12 18.58 6.07 14.36 23.59 5.79 5.43 10.33 11.84 8.25 4.28 19.79 3.70 6.31 6.91 58 I11_AR1 ActiveIntronRegion 0 19.54 16.03 9.25 21.49 12.35 13.63 22.21 17.40 17.19 18.66 6.09 14.42 23.70 5.82 5.46 10.37 11.89 8.28 4.30 19.88 3.72 6.33 6.94 59 E12_Aa NovelBoundary 0 41.04 9.60 17.42 18.21 71.05 20.90 14.44 25.59 27.05 13.30 0.00 11.70 21.43 22.01 4.45 0.00 7.29 8.91 4.80 5.75 6.30 2.63 3.50 60 ER12a ExonRegion 0 111.59 188.59 130.29 177.38 103.00 116.66 90.29 87.62 112.72 168.61 141.37 110.04 78.36 118.91 129.26 84.73 138.38 91.68 92.52 166.15 59.84 78.40 56.20 61 E12_Da NovelBoundary 0 148.54 38.41 13.39 46.28 24.87 39.92 63.82 48.96 29.63 47.14 14.79 0.00 33.44 10.07 0.00 54.52 21.88 23.71 13.84 41.74 14.39 11.33 37.65 62 E12a_E13a KnownJunction 1 96.24 241.54 140.59 169.78 103.23 109.94 108.51 78.08 114.21 166.38 94.50 63.77 73.70 97.59 122.75 49.56 154.18 86.39 41.88 166.95 49.85 66.44 49.34 63 E13_Aa NovelBoundary 0 43.49 24.93 10.50 23.44 24.19 13.00 31.75 28.46 21.61 29.90 4.95 12.60 15.10 11.95 9.02 12.90 4.77 12.31 9.60 33.49 2.66 3.12 8.71 64 ER13a ExonRegion 0 84.99 222.25 114.13 149.50 78.21 120.16 80.31 75.17 106.73 146.26 89.98 90.05 96.40 140.75 98.91 66.44 108.88 83.60 39.45 132.77 45.90 80.74 44.55 65 E13a_E14a KnownJunction 0 91.20 268.24 124.42 199.84 90.58 103.80 84.44 103.92 158.85 177.80 86.13 85.08 107.95 132.79 143.15 57.93 82.09 72.83 43.58 161.14 64.99 91.30 33.89 66 ER14a ExonRegion 0 108.29 239.15 153.84 193.62 140.82 161.10 104.15 96.71 114.94 145.14 97.31 103.43 119.06 117.06 135.13 124.50 99.11 132.58 107.64 165.93 79.75 80.37 74.09 67 E14a_E15a KnownJunction 0 75.72 208.65 150.44 175.54 114.09 121.12 71.28 97.39 92.42 123.97 115.66 102.93 79.86 143.80 137.96 72.20 56.76 132.28 54.50 136.08 79.14 56.64 71.71 68 ER15a ExonRegion 0 123.80 243.61 189.20 209.65 128.77 129.39 104.47 84.67 95.96 128.19 117.84 81.25 68.92 117.79 132.08 109.06 103.83 113.02 85.40 159.30 85.21 71.98 69.64 69 E15a_E16b KnownJunction 0 96.09 218.51 147.45 148.37 126.15 150.88 138.67 81.57 79.86 126.71 130.66 106.83 87.01 97.83 135.86 100.83 70.13 99.07 61.27 148.10 80.87 50.64 30.99 70 ER16a ExonRegion 0 18.06 17.44 12.47 11.03 17.38 16.59 16.97 6.66 7.79 9.52 2.72 15.68 15.76 4.33 6.61 9.21 4.49 8.21 8.12 10.54 8.48 7.86 8.15 71 E16_Ab KnownBoundary 0 29.63 20.65 21.79 14.32 40.66 29.93 25.70 13.43 11.26 13.65 2.26 0.00 20.62 7.12 13.35 4.19 8.70 13.97 12.52 9.33 5.37 2.88 11.01 72 ER16b ExonRegion 0 110.18 199.89 163.95 174.93 163.61 135.76 124.92 91.71 80.68 129.99 128.62 101.17 93.66 115.91 143.44 85.23 102.57 91.93 58.13 164.83 67.83 49.91 56.49 73 E16a_E17a KnownJunction 0 146.69 233.38 189.85 207.00 238.29 118.51 141.23 101.33 71.70 135.17 113.98 107.28 107.79 131.73 127.08 99.80 123.42 67.78 101.74 148.61 63.26 77.46 41.15 74 ER17a ExonRegion 0 93.20 170.24 145.96 157.84 150.51 110.18 105.37 97.02 72.58 137.67 105.15 105.71 95.44 131.88 121.42 112.45 79.11 73.11 75.33 123.30 65.19 84.28 46.84 75 E17a_E18a KnownJunction 0 73.27 111.16 133.56 159.89 117.15 131.00 80.33 101.25 84.84 123.24 91.55 120.79 94.15 115.02 136.35 133.81 76.86 112.84 101.46 109.04 58.75 84.56 54.03 76 I17 Intron 0 15.42 11.38 18.62 26.00 12.78 12.48 14.42 10.46 9.93 12.21 12.37 18.87 20.17 16.40 28.55 15.66 14.99 7.78 11.35 22.26 8.64 17.82 11.56 77 I17_AR1 ActiveIntronRegion 0 5.36 4.36 1.85 5.53 5.30 3.07 4.84 3.74 3.15 3.16 1.62 0.00 23.35 2.25 2.49 0.36 5.73 0.00 0.13 3.65 1.84 1.19 3.24 78 I17_AR2 ActiveIntronRegion 0 46.08 33.27 51.84 64.99 35.20 35.37 36.45 26.43 23.12 29.20 39.71 60.42 56.11 52.51 92.20 42.96 44.11 20.95 32.79 60.29 25.44 55.13 31.24 79 E18_Aa NovelBoundary 0 34.15 57.88 41.25 92.46 46.94 54.85 22.04 37.46 38.34 35.40 64.33 123.94 86.03 65.34 67.25 66.82 132.12 37.27 85.37 86.99 67.46 57.87 49.34 80 ER18a ExonRegion 0 123.38 164.32 195.30 206.76 143.07 161.21 90.60 124.79 118.89 162.57 209.61 229.74 166.95 188.95 233.71 167.15 205.30 113.01 124.96 231.04 113.44 133.32 117.50 81 E18_Da KnownBoundary 0 97.05 92.35 94.67 137.08 108.49 111.53 78.87 32.49 46.32 35.08 69.60 146.30 74.67 106.83 123.62 106.21 87.33 61.02 75.58 110.64 34.97 135.82 86.64 82 E18a_E19a KnownJunction 0 57.86 145.04 132.49 139.48 79.03 115.50 79.49 99.89 90.16 123.70 131.19 175.11 85.22 179.00 181.35 75.11 78.35 50.12 53.08 111.09 74.57 54.13 42.08 83 ER18b ExonRegion 0 58.64 62.72 51.71 82.31 78.31 69.78 60.05 28.28 34.85 31.38 76.99 114.57 104.28 77.93 89.28 72.41 69.44 37.11 72.54 96.16 66.73 88.80 59.07 84 E18_Db NovelBoundary 0 86.02 80.31 90.80 126.52 78.27 48.55 75.34 37.75 51.19 38.44 59.07 108.79 66.55 112.37 114.47 143.30 79.20 71.80 59.20 108.21 53.56 56.21 112.94 85 I18 Intron 0 71.22 52.39 24.96 29.90 56.27 85.81 44.56 13.54 17.42 17.07 51.83 117.57 78.76 71.43 70.35 110.95 81.57 40.16 82.06 67.12 37.05 94.23 64.85 86 I18_AR1 ActiveIntronRegion 0 72.70 53.47 25.46 30.47 57.43 87.60 45.46 13.81 17.77 17.42 52.90 119.99 80.42 72.90 71.74 113.22 83.25 40.98 83.76 68.42 37.81 96.21 66.18 87 E19_Aa NovelBoundary 1 46.60 59.73 55.97 77.05 43.04 78.31 61.70 39.02 48.78 50.31 58.23 202.12 188.79 102.89 87.89 57.59 63.39 13.93 66.45 102.71 72.34 81.50 69.23 88 ER19a ExonRegion 1 95.76 149.95 145.22 188.50 157.81 128.79 115.06 101.83 113.46 125.12 144.19 297.75 232.24 157.51 160.06 144.75 149.03 67.20 114.79 195.09 61.76 175.51 98.42 89 ER19b ExonRegion 1 4.94 8.81 12.66 10.90 6.24 12.84 7.50 4.61 7.82 9.94 7.73 28.86 10.94 10.83 5.80 6.93 5.50 3.70 6.37 16.31 3.67 23.61 6.85 90 ER19c ExonRegion 0 0.00 1.02 3.06 2.73 0.00 3.67 0.00 0.00 3.09 3.44 2.90 0.00 7.04 2.44 0.00 2.97 0.00 0.92 0.00 2.13 0.00 1.04 4.40 91 IG45 Intergenic 0 29.31 93.06 42.46 83.93 48.21 40.78 47.21 26.71 38.58 40.29 55.39 185.74 145.30 64.86 46.77 55.61 44.82 17.23 24.86 99.30 17.31 134.45 41.13 92 IG45_AR1 ActiveIntergenicRegion 0 29.37 93.25 42.54 84.10 48.31 40.87 47.30 26.77 38.66 40.38 55.50 186.09 145.59 65.00 46.86 55.72 44.92 17.27 24.91 99.50 17.35 134.72 41.21