Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GNPAT Gene 0 153.89 199.86 170.67 159.88 168.21 222.01 124.84 128.75 101.01 155.15 254.58 208.49 179.20 246.57 198.80 182.35 245.93 108.11 118.84 178.05 83.21 95.66 72.02 2 366646 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.28 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 436239 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 366647 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 416000 Transcript 0 0.00 2.83 9.96 2.06 0.00 2.27 8.13 0.00 0.00 0.00 7.48 0.00 6.82 0.00 0.00 0.00 0.00 1.74 0.00 18.34 0.00 0.00 3.84 6 492459 Transcript 0 15.64 16.51 5.09 17.40 23.68 21.03 14.55 10.46 9.75 12.30 10.18 15.16 15.67 17.86 5.74 11.03 14.36 6.37 5.28 12.44 5.12 7.11 7.25 7 469332 Transcript 0 86.34 32.63 21.72 57.66 55.51 66.20 24.07 28.40 14.86 17.67 19.94 17.36 19.09 21.59 20.36 24.14 29.75 3.85 5.61 12.78 3.23 17.54 4.70 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.28 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1_Ad KnownBoundary 0 0.00 0.00 0.00 1.63 0.00 0.00 1.68 0.00 1.16 1.02 0.00 0.00 0.00 0.00 0.00 3.42 0.00 5.22 0.00 2.43 0.00 0.00 0.00 12 ER1b ExonRegion 0 0.00 0.68 0.00 0.00 0.00 0.00 0.88 0.00 1.24 0.00 0.00 0.00 0.00 1.62 0.00 2.97 0.00 1.23 0.00 1.42 0.00 0.00 0.00 13 ER1c ExonRegion 0 0.00 6.10 0.00 0.00 1.34 2.14 3.75 0.00 1.24 1.34 2.58 0.00 0.00 7.31 4.35 5.94 4.95 6.16 0.00 14.89 3.31 1.04 2.45 14 ER1d ExonRegion 1 33.39 83.46 41.74 26.39 22.19 60.50 36.77 39.39 46.77 68.42 232.25 38.32 53.52 109.51 99.30 112.72 314.85 96.58 94.42 119.78 128.46 48.31 54.54 15 E1a_E2a KnownJunction 1 37.04 86.56 69.22 70.25 43.63 50.31 22.70 47.60 57.20 60.65 86.29 109.24 112.17 165.93 96.67 318.12 63.11 228.37 113.13 169.19 26.44 43.54 114.64 16 E1a_E3a KnownJunction 0 0.00 5.53 1.66 6.79 0.00 8.18 1.85 0.00 1.22 5.43 5.00 18.01 0.00 0.00 8.90 26.32 8.70 18.03 21.27 17.32 3.15 2.57 15.79 17 ER2a ExonRegion 0 48.48 175.28 101.14 120.02 130.50 194.12 100.58 81.50 99.91 127.78 261.33 245.27 196.75 251.19 109.66 174.62 211.26 116.49 82.94 205.48 60.62 102.54 63.48 18 E2a_E3a KnownJunction 1 152.62 249.69 124.71 151.36 203.99 188.19 155.23 98.25 126.30 159.48 406.95 315.55 250.96 297.84 90.98 179.70 237.59 68.77 118.59 238.73 62.46 107.22 76.74 19 ER3a ExonRegion 0 81.95 193.48 137.26 162.38 138.74 211.37 110.56 129.07 138.72 180.83 384.49 427.14 279.71 387.65 157.99 203.56 351.06 125.73 125.66 261.44 97.04 123.92 93.67 20 E3_Da NovelBoundary 1 91.20 245.88 154.52 140.11 173.51 262.46 143.22 121.54 143.31 196.12 440.85 571.24 309.07 422.92 164.66 230.62 335.11 104.59 138.36 246.15 91.49 114.87 134.87 21 E3a_E4a KnownJunction 0 0.00 2.83 9.96 2.06 0.00 2.27 8.13 0.00 0.00 0.00 7.48 0.00 6.82 0.00 0.00 0.00 0.00 1.74 0.00 18.34 0.00 0.00 3.84 22 E3b_E4a KnownJunction 0 124.84 188.06 157.92 166.58 136.84 259.45 130.15 118.13 135.76 214.57 426.69 486.31 399.65 379.01 196.92 402.29 376.62 174.89 232.38 216.42 136.78 129.14 129.58 23 ER3b ExonRegion 0 90.45 191.50 139.61 143.10 136.82 238.94 122.47 110.97 130.51 196.31 452.81 509.00 348.78 398.50 167.11 320.59 347.69 151.58 171.58 218.72 114.23 117.58 138.32 24 E4_Aa NovelBoundary 1 26.45 27.96 9.08 21.51 24.53 37.02 36.13 21.77 18.34 27.48 16.27 59.27 106.00 35.61 9.64 15.64 13.00 4.02 0.00 26.33 2.90 6.25 8.02 25 ER4a ExonRegion 0 65.99 226.13 152.89 144.07 186.11 236.88 160.32 121.38 126.61 206.21 422.72 439.21 297.06 433.55 186.15 285.26 403.37 201.29 161.82 261.98 145.67 125.16 116.79 26 E4a_E5a KnownJunction 0 72.24 274.89 186.48 143.77 234.13 248.04 168.30 136.24 133.19 208.02 439.80 539.73 318.97 452.65 181.35 253.95 380.93 150.14 169.13 212.01 152.47 110.16 135.39 27 ER5a ExonRegion 0 90.38 231.94 162.15 172.88 161.65 290.51 131.36 130.35 124.80 197.95 386.52 393.88 268.06 415.14 191.14 288.09 348.61 169.47 195.78 246.51 132.60 139.47 114.09 28 E5a_E6a KnownJunction 0 113.13 248.44 156.09 174.40 197.71 302.89 191.05 161.79 121.12 189.43 364.67 278.04 179.21 383.07 157.98 189.78 360.45 123.08 126.40 194.76 98.84 130.61 83.74 29 ER6a ExonRegion 0 117.66 254.09 142.61 159.57 181.60 306.61 171.05 134.86 106.38 188.95 348.71 303.80 225.00 319.33 153.38 225.96 321.53 130.22 126.53 157.22 97.89 106.26 81.96 30 E6a_E7a KnownJunction 0 143.80 319.94 179.95 193.55 208.15 267.91 214.23 145.07 113.08 179.06 279.54 280.74 226.45 257.52 193.21 268.90 289.39 144.63 189.18 149.05 65.24 149.29 119.85 31 ER7a ExonRegion 0 175.21 317.29 185.66 166.69 222.57 322.04 213.00 158.38 113.84 186.24 384.30 336.92 276.11 304.19 186.94 252.40 325.43 130.22 148.04 188.35 50.23 167.38 108.81 32 E7_Da KnownBoundary 0 212.48 428.94 171.28 176.50 295.08 378.30 255.08 170.95 127.60 186.96 427.27 268.14 315.73 328.39 199.89 237.46 406.83 99.74 124.80 190.03 70.49 193.62 109.61 33 ER7b ExonRegion 0 172.52 364.06 167.93 175.72 206.16 295.67 151.30 177.63 128.05 192.36 385.41 261.58 243.77 358.74 190.27 222.70 369.47 120.71 146.90 181.10 81.64 187.03 89.33 34 E7_Ab KnownBoundary 0 243.08 426.57 152.89 156.36 185.14 246.85 142.95 159.74 89.87 155.67 326.35 335.51 217.19 332.28 186.54 257.62 322.30 101.31 125.65 199.36 92.30 154.86 77.60 35 E7b_E8a KnownJunction 1 256.34 479.26 201.47 184.82 211.80 283.76 191.89 162.28 125.40 194.45 276.49 232.88 241.22 306.02 115.71 341.62 307.71 108.36 136.19 189.64 98.16 86.58 88.61 36 ER7c ExonRegion 0 200.45 409.34 173.73 165.17 146.99 243.24 145.12 162.98 124.75 188.91 313.82 247.34 228.45 334.46 167.80 294.14 324.02 116.59 114.67 195.81 93.05 112.64 80.33 37 ER8a ExonRegion 0 138.37 401.69 221.46 176.63 209.75 338.92 181.39 138.67 139.48 200.86 362.38 287.79 250.93 337.26 236.46 262.27 312.22 149.78 144.97 223.29 135.94 144.34 103.10 38 E8a_E9a KnownJunction 0 145.51 365.92 279.38 226.84 229.97 415.95 159.87 168.03 141.32 208.66 397.15 285.24 208.10 449.53 306.32 314.36 285.09 185.67 186.26 265.70 167.23 164.90 152.63 39 ER9a ExonRegion 0 200.95 370.90 290.94 263.85 235.50 354.66 191.74 183.46 166.85 255.93 365.53 268.72 226.11 429.24 328.18 379.41 338.83 248.90 223.22 281.94 176.71 149.60 147.04 40 E9a_E10a NovelJunction 0 5.78 2.76 3.67 22.44 0.00 4.43 4.06 5.38 1.62 2.74 2.00 5.55 6.49 0.00 0.00 7.52 0.00 7.05 0.00 0.00 0.00 0.00 4.35 41 E9a_E11a KnownJunction 0 246.56 648.57 285.44 243.16 278.44 400.68 225.32 171.61 151.24 290.24 441.27 166.10 288.29 468.31 360.96 459.71 418.23 260.58 369.14 284.81 208.00 164.35 153.23 42 E9b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER9b ExonRegion 0 6.35 10.17 1.84 8.69 9.37 20.63 9.10 7.78 6.64 5.16 7.73 10.28 1.76 16.65 2.18 10.40 4.95 3.23 1.59 2.66 4.41 4.95 4.04 44 I9 Intron 0 26.82 24.48 16.69 29.69 39.23 26.97 21.09 19.00 16.24 22.89 21.87 15.12 21.82 27.46 14.96 29.86 23.90 18.46 12.54 22.72 8.47 14.71 16.74 45 I9_AR1 ActiveIntronRegion 0 38.31 30.05 2.61 5.80 49.71 27.97 25.24 2.46 6.14 4.07 18.41 13.11 14.68 26.05 15.43 18.39 14.16 10.08 9.11 19.23 2.10 5.96 20.94 46 I9_AR2 ActiveIntronRegion 0 34.03 30.37 22.45 39.32 45.41 30.34 25.35 25.94 20.26 29.38 26.99 15.17 23.86 27.25 17.71 37.74 28.90 24.14 14.42 27.42 10.57 17.60 17.18 47 E10_Aa NovelBoundary 0 89.05 55.71 22.06 74.65 98.13 96.42 40.23 35.57 41.09 47.12 20.22 46.07 41.07 41.50 41.91 41.01 42.36 24.66 11.77 30.49 7.91 7.41 14.60 48 ER10a ExonRegion 1 40.58 39.36 13.42 43.51 61.67 42.46 34.55 23.59 22.61 31.75 22.81 35.19 45.26 36.94 15.03 22.67 38.13 15.89 14.24 34.65 10.94 16.37 17.71 49 E10_Da NovelBoundary 0 50.31 64.07 37.49 72.29 61.21 52.75 29.41 34.71 32.26 48.00 29.48 55.52 20.13 36.91 10.01 24.27 35.25 36.06 8.94 11.57 34.47 19.78 10.93 50 I10 Intron 0 69.12 40.40 25.58 54.42 64.16 49.13 47.67 35.49 29.43 38.90 27.51 27.80 31.54 29.41 14.21 26.24 29.40 18.55 17.22 28.02 9.22 18.08 12.52 51 I10_AR1 ActiveIntronRegion 0 69.32 40.52 25.66 54.58 64.35 49.28 47.82 35.59 29.51 39.01 27.59 27.88 31.64 29.50 14.25 26.32 29.49 18.60 17.27 28.11 9.25 18.13 12.56 52 E11_Aa NovelBoundary 0 230.41 57.75 34.03 96.46 137.95 77.85 59.62 72.91 52.08 62.45 69.28 20.26 32.30 46.85 36.22 65.20 55.54 32.50 19.01 57.72 20.02 50.76 28.60 53 ER11a ExonRegion 0 289.14 348.65 304.19 251.47 247.10 392.92 184.20 174.89 145.27 221.18 375.98 164.23 222.27 413.06 341.61 314.54 414.19 237.05 194.62 300.87 167.47 113.00 126.07 54 E11a_E12a KnownJunction 0 565.14 301.13 305.19 295.83 230.98 337.53 172.23 205.45 174.01 223.87 368.25 179.01 242.19 428.63 446.38 290.01 382.05 206.40 182.22 312.11 134.67 172.37 120.96 55 ER12a ExonRegion 0 411.42 247.26 288.33 287.42 249.45 332.58 204.04 207.93 171.13 253.42 346.76 182.92 230.22 345.13 380.43 256.12 378.08 179.92 192.60 284.95 118.84 148.11 110.53 56 E12a_E13a KnownJunction 0 529.72 318.30 332.81 282.98 344.99 477.28 307.37 226.69 168.66 258.95 350.35 191.01 233.59 361.77 391.37 263.09 363.63 166.85 173.93 308.59 97.61 155.47 82.89 57 ER13a ExonRegion 0 318.96 314.40 281.37 256.36 381.82 501.30 299.55 244.83 140.71 249.55 355.86 258.45 249.34 340.11 373.23 230.98 327.65 114.86 175.26 258.20 85.27 131.50 80.31 58 E13_Da NovelBoundary 0 132.69 34.20 16.65 71.62 144.74 98.98 44.30 37.50 18.87 35.57 28.27 6.30 27.92 42.26 14.71 69.13 67.51 40.29 13.08 23.01 9.33 53.70 48.66 59 E13a_E14b KnownJunction 1 284.12 336.12 296.65 264.14 556.03 467.17 318.99 222.21 136.78 221.77 305.71 350.06 410.04 324.74 415.48 197.73 317.44 121.04 231.35 253.62 68.82 92.03 97.31 60 I13 Intron 0 35.37 18.62 16.23 51.86 44.72 41.55 22.21 24.45 15.01 18.96 27.00 16.84 21.41 30.62 19.13 63.97 26.92 12.96 6.39 18.63 10.61 19.36 16.49 61 I13_AR1 ActiveIntronRegion 0 35.46 18.66 16.27 51.99 44.84 41.66 22.27 24.51 15.05 19.01 27.07 16.87 21.45 30.70 19.18 64.14 26.98 12.99 6.40 18.68 10.63 19.40 16.53 62 E14_Aa NovelBoundary 0 137.73 35.78 18.48 79.78 83.62 84.38 32.77 41.90 18.89 33.20 17.64 11.85 8.28 9.89 30.16 51.52 21.69 6.09 8.94 10.80 0.00 18.98 27.15 63 ER14a ExonRegion 0 86.34 32.63 21.72 57.66 55.51 66.20 24.07 28.40 14.86 17.67 19.94 17.36 19.09 21.59 20.36 24.14 29.75 3.85 5.61 12.78 3.23 17.54 4.70 64 E14_Ab KnownBoundary 0 44.38 21.97 22.38 57.93 139.30 119.65 49.37 26.37 13.40 28.72 15.21 39.31 32.79 19.54 27.07 31.02 27.68 5.97 19.86 30.81 8.34 13.96 7.00 65 ER14b ExonRegion 0 287.98 334.29 360.57 329.82 510.33 435.31 260.88 291.30 158.96 286.43 365.07 385.88 384.78 356.79 451.36 245.30 309.02 115.62 249.95 279.90 105.22 133.79 125.28 66 E14_Da KnownBoundary 0 334.21 357.96 424.32 375.41 456.11 402.27 243.16 338.70 193.72 333.60 377.62 378.87 433.09 401.91 466.78 231.05 279.57 95.96 272.48 321.95 127.63 139.67 134.19 67 ER14c ExonRegion 0 292.12 282.86 430.41 374.19 339.87 323.95 187.47 317.07 185.17 323.78 434.49 474.74 383.86 386.85 504.15 342.19 343.55 116.20 281.60 290.22 94.38 149.01 110.41 68 E14b_E15a KnownJunction 0 376.21 331.39 509.47 405.88 289.39 315.73 231.41 319.15 176.65 305.45 376.78 494.41 397.21 456.65 540.08 251.90 318.09 110.72 261.00 286.35 85.07 157.98 78.02 69 ER15a ExonRegion 0 362.69 262.87 445.53 379.87 277.20 316.00 188.68 291.21 187.08 313.54 377.82 455.47 345.22 364.74 397.97 201.41 370.75 96.32 191.97 276.39 100.06 135.01 79.51 70 E15a_E16a KnownJunction 0 859.34 379.60 409.83 353.90 466.04 465.24 289.93 254.21 161.89 295.02 397.73 319.75 297.38 322.98 467.77 226.35 343.71 95.92 244.05 327.64 76.91 214.75 129.75 71 ER16a ExonRegion 1 472.46 257.94 318.91 258.29 407.53 388.20 281.26 215.14 125.84 210.07 289.75 274.01 323.31 258.52 482.03 214.81 258.32 59.99 177.20 257.27 45.64 172.09 88.67 72 E16a_E17a KnownJunction 1 868.30 445.97 541.55 445.06 839.98 595.57 491.84 345.39 217.59 311.46 376.36 432.29 414.58 385.66 748.63 350.76 397.19 97.58 322.83 298.11 68.94 131.04 131.37 73 ER17a ExonRegion 1 479.32 310.76 351.38 306.22 539.75 396.90 308.28 245.17 150.11 224.29 291.99 367.60 288.88 265.70 540.99 222.72 329.16 36.67 215.71 239.83 61.02 130.87 78.37 74 E17_Da KnownBoundary 0 277.75 252.65 408.89 374.71 328.61 253.43 199.79 299.92 178.27 258.04 237.17 255.98 125.64 217.26 394.46 143.89 236.65 42.20 112.00 211.12 43.43 123.32 32.69 75 ER17b ExonRegion 0 114.66 88.63 142.79 116.13 94.58 82.97 52.45 119.73 68.55 102.55 98.07 101.51 88.76 90.31 146.91 60.59 78.70 20.51 43.42 90.44 15.14 61.31 18.44 76 ER17c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00