Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 JMJD4 Gene 0 10.53 9.95 33.41 29.09 7.68 16.75 13.18 19.85 10.85 25.21 13.73 8.02 5.20 28.28 43.67 26.70 24.54 26.81 21.72 29.42 19.21 11.87 11.04 2 366758 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 438896 Transcript 0 3.70 3.09 1.66 5.43 0.00 0.00 2.25 4.35 4.40 2.82 2.68 0.00 0.00 0.00 10.26 7.86 0.00 2.11 0.00 5.37 17.24 0.00 0.00 4 480590 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 485807 Transcript 0 1.26 0.30 2.90 1.62 0.44 0.22 1.50 2.34 0.99 2.15 0.94 1.57 0.24 0.80 3.16 1.18 2.02 1.46 1.23 2.29 1.76 0.81 0.53 6 465251 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 0 3.05 2.22 4.43 2.07 0.87 11.66 5.06 1.53 0.60 3.63 1.38 2.90 1.18 10.20 8.58 5.14 3.12 10.74 5.99 4.55 2.32 2.85 3.54 9 E1_Ac KnownBoundary 0 9.71 3.16 17.95 26.54 0.00 12.66 3.71 10.88 12.41 20.55 5.05 0.00 6.01 30.43 43.64 8.63 17.77 23.30 16.66 26.53 10.63 27.25 6.83 10 ER1c ExonRegion 0 2.22 8.39 23.76 13.42 2.05 8.02 4.01 9.78 10.92 25.39 18.79 5.07 1.69 58.80 67.09 31.72 38.58 38.95 22.35 34.54 20.35 19.92 13.17 11 E1_Da NovelBoundary 0 0.00 6.38 3.67 9.39 4.33 17.83 4.28 13.60 12.09 18.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.31 13.84 8.95 6.24 0.00 10.59 12 E1a_E2a KnownJunction 0 11.11 9.54 37.73 16.48 7.47 4.77 7.91 13.23 15.22 34.76 30.69 22.51 6.82 100.71 107.05 67.25 65.92 73.04 48.10 63.34 30.58 11.45 17.76 13 Ix Intron 0 2.41 15.06 8.32 13.31 6.86 19.85 9.81 22.75 16.26 27.27 2.75 1.02 3.30 6.48 10.94 7.62 4.70 21.73 12.71 19.40 18.84 2.97 5.86 14 Ix_AR1 ActiveIntronRegion 0 2.44 15.22 8.41 13.46 6.92 20.08 9.92 23.01 16.44 27.57 2.78 1.03 3.34 6.55 11.06 7.71 4.76 21.96 12.85 19.62 19.05 3.00 5.92 15 E2_Aa NovelBoundary 0 21.34 22.30 29.04 58.80 28.18 33.45 22.83 49.04 60.71 83.08 12.16 19.66 0.00 4.65 8.90 30.16 30.29 38.72 18.64 24.16 22.73 3.12 11.18 16 ER2a ExonRegion 0 31.93 42.85 96.76 88.98 35.11 88.06 32.56 57.55 56.67 95.84 66.43 44.60 33.96 145.36 131.99 108.30 96.10 121.72 81.03 114.84 84.34 53.31 36.35 17 E2_Da NovelBoundary 0 20.30 15.92 17.06 85.84 37.44 67.86 32.72 76.97 62.41 102.24 4.95 0.00 6.17 2.47 14.09 15.98 13.46 37.97 26.64 35.92 35.21 2.45 11.52 18 E2a_E3c KnownJunction 0 11.34 35.78 122.17 84.01 20.46 33.28 26.67 38.24 21.59 66.46 74.44 24.91 67.37 167.17 195.32 138.25 89.20 103.01 35.01 123.17 90.57 37.35 52.50 19 Ix Intron 0 8.02 15.92 9.22 33.84 24.32 19.91 12.37 31.87 29.75 47.90 3.42 7.20 0.98 4.51 7.89 10.51 8.33 19.47 12.06 18.26 16.69 2.10 5.19 20 Ix_AR3 ActiveIntronRegion 0 9.89 18.31 10.52 39.35 28.10 21.58 14.47 36.77 34.75 55.10 3.77 8.98 0.93 5.10 9.01 12.92 10.09 22.42 12.17 21.33 19.02 2.62 6.36 21 Ix_AR2 ActiveIntronRegion 0 0.60 10.26 6.36 18.24 14.78 21.92 6.05 19.75 14.70 30.15 3.50 0.00 2.01 3.79 4.84 1.27 2.04 12.76 18.20 10.23 12.07 0.00 0.70 22 E3_Aa NovelBoundary 0 3.48 15.66 5.68 4.43 8.40 2.10 5.79 5.34 5.09 16.28 2.37 0.00 0.00 2.12 0.00 0.00 0.00 3.15 4.80 2.43 5.75 0.00 0.00 23 ER3a ExonRegion 0 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER3b ExonRegion 0 3.20 2.54 0.31 2.37 1.39 0.91 1.74 7.34 2.84 2.76 0.22 1.17 3.29 1.49 1.20 2.65 0.90 1.48 0.67 2.98 1.94 0.09 1.00 25 E3_Ac KnownBoundary 0 0.00 0.00 1.60 2.06 7.81 0.00 10.82 11.99 1.56 1.02 0.00 0.00 0.00 0.00 0.00 0.00 3.55 3.98 0.00 0.00 2.90 0.00 0.00 26 ER3c ExonRegion 0 6.49 10.02 86.29 65.46 7.28 12.50 15.26 38.41 21.13 48.58 45.28 30.38 13.84 102.92 106.26 92.23 70.64 64.14 39.96 69.55 52.29 37.67 30.45 27 E3_Da KnownBoundary 0 0.00 3.29 1.66 3.76 0.00 19.31 0.00 6.98 3.56 0.00 0.00 0.00 0.00 0.00 0.00 3.42 0.00 6.18 3.86 8.56 0.00 0.00 0.00 28 E3a_E3d KnownJunction 0 34.01 18.35 76.70 77.61 21.14 18.40 25.75 59.72 19.59 49.10 78.39 65.87 19.32 134.68 179.62 102.79 133.71 93.06 87.16 91.98 79.82 76.36 67.44 29 ER3d ExonRegion 0 0.09 0.06 0.34 0.45 0.09 0.10 0.39 0.21 0.09 0.20 0.28 0.29 0.10 0.55 0.86 0.41 0.50 0.33 0.25 0.71 0.35 0.29 0.23 30 E3_Ad KnownBoundary 0 3.56 6.58 1.57 8.89 0.00 7.33 3.89 7.31 0.00 1.16 2.37 0.00 0.00 0.00 0.00 4.36 0.00 15.59 0.00 0.00 2.53 0.00 0.00 31 ER3e ExonRegion 0 8.53 10.63 60.10 44.87 21.32 17.36 12.64 25.59 15.00 32.06 31.08 24.37 17.17 98.99 92.00 58.68 42.81 49.56 31.80 60.02 36.75 41.97 26.43 32 E3_Db KnownBoundary 1 14.22 26.77 62.33 44.92 23.60 28.39 29.81 21.36 21.15 34.44 7.37 17.41 19.64 50.09 85.91 52.55 4.58 44.56 45.93 45.45 7.85 34.05 0.00 33 ER3f ExonRegion 0 9.17 9.02 49.50 29.84 4.49 13.10 10.66 22.26 12.09 23.60 16.81 8.09 7.37 22.70 48.68 22.14 23.03 25.97 21.19 25.84 17.51 13.92 12.81 34 E3_Dc KnownBoundary 0 0.00 0.00 0.00 1.86 4.33 2.10 0.00 2.34 2.81 6.10 2.37 0.00 0.00 0.00 0.00 3.85 4.39 0.00 0.00 2.49 2.78 0.00 4.18 35 E3c_E3e KnownJunction 0 13.85 13.55 91.22 51.18 7.13 26.23 22.83 45.14 16.98 43.92 44.80 6.30 19.64 58.33 148.96 64.26 62.93 73.04 68.71 73.76 48.43 18.92 16.30 36 E3c_E4a NovelJunction 0 0.00 0.00 3.16 4.93 7.56 0.00 6.32 0.00 0.00 1.42 2.63 6.30 0.00 4.94 13.35 8.72 18.70 0.00 0.00 0.00 0.00 0.00 0.00 37 ER3g ExonRegion 0 0.81 0.00 0.00 0.00 0.00 1.39 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.61 0.00 1.26 0.00 0.00 38 E3_Dd KnownBoundary 0 0.00 3.22 0.00 3.53 3.90 22.60 1.68 4.19 1.68 5.40 2.26 0.00 0.00 0.00 0.00 0.00 0.00 5.89 4.24 0.00 0.00 0.00 0.00 39 ER3h ExonRegion 0 1.71 0.10 5.35 3.86 0.07 0.17 0.22 1.07 0.14 2.74 0.78 0.07 0.19 1.05 5.44 1.74 1.64 1.01 0.63 0.55 2.51 1.12 0.15 40 E3_Ae KnownBoundary 0 6.89 0.00 7.36 20.18 3.14 8.23 5.08 14.75 7.29 32.26 2.63 12.75 0.00 0.00 6.30 0.00 4.30 12.73 9.04 26.72 5.62 0.00 0.00 41 ER3i ExonRegion 0 13.99 5.54 46.20 30.37 2.18 10.24 8.55 23.37 12.10 23.03 17.85 1.10 2.25 10.76 26.61 12.22 22.53 25.68 21.55 22.01 22.08 8.23 4.64 42 E3_De KnownBoundary 0 20.52 17.04 53.81 47.18 10.36 19.70 8.13 38.65 25.81 31.67 9.95 5.40 11.85 6.71 36.84 11.62 31.04 35.19 16.85 21.35 28.17 2.69 7.26 43 E3e_E4a KnownJunction 0 3.70 3.09 1.66 5.43 0.00 0.00 2.25 4.35 4.40 2.82 2.68 0.00 0.00 0.00 10.26 7.86 0.00 2.11 0.00 5.37 17.24 0.00 0.00 44 ER3j ExonRegion 0 18.43 27.07 92.00 53.04 4.46 28.04 19.53 43.72 15.77 34.14 29.11 13.26 1.86 32.11 66.43 42.60 39.89 46.46 26.88 35.19 34.16 18.27 16.21 45 E3_Df NovelBoundary 0 7.56 8.68 11.53 30.40 3.74 24.47 6.62 27.81 25.26 47.14 0.00 0.00 0.00 7.24 5.44 6.49 12.06 26.82 8.19 27.42 11.92 7.84 0.00 46 E3f_E4a KnownJunction 0 15.85 34.34 161.70 90.00 23.34 64.85 54.41 62.06 34.14 54.29 73.54 37.21 13.15 101.54 168.37 93.99 70.97 109.98 91.48 81.37 69.87 40.84 36.11 47 E4_Aa NovelBoundary 0 9.33 9.47 11.89 54.54 19.52 19.53 6.49 31.83 44.76 53.64 0.00 0.00 6.33 7.95 4.45 3.16 11.22 39.01 17.32 21.16 31.32 3.00 3.84 48 ER4a ExonRegion 0 21.10 18.65 59.35 57.83 14.73 30.93 26.03 34.99 17.14 46.62 20.86 8.74 6.90 43.38 81.79 46.70 42.17 44.20 40.24 51.95 31.79 18.41 19.65 49 E4_Da KnownBoundary 0 12.15 13.55 27.38 7.96 16.13 0.00 19.52 9.24 8.88 9.80 2.16 6.30 0.00 4.65 19.90 4.36 3.74 16.54 21.18 13.87 5.13 3.00 7.43 50 ER4b ExonRegion 0 6.21 9.08 13.81 3.82 8.03 0.61 5.56 7.45 8.34 8.89 0.60 14.82 2.08 2.42 10.32 1.85 3.45 12.20 13.02 9.98 5.29 3.57 5.48 51 E4_Db KnownBoundary 0 2.74 3.35 1.83 1.43 0.00 0.00 0.00 8.21 6.25 7.58 2.32 19.36 6.82 0.00 0.00 0.00 0.00 3.90 0.00 11.44 8.65 0.00 3.24 52 ER4c ExonRegion 0 1.71 1.03 5.90 2.18 1.61 0.61 5.38 8.07 3.19 5.68 2.68 5.91 0.65 1.63 6.32 2.58 5.95 4.51 4.04 7.93 4.17 1.82 1.74