Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MFSD4 Gene 0 13.00 23.72 20.16 32.32 16.54 64.86 14.22 25.99 42.82 11.60 4.80 7.43 9.54 7.00 9.59 7.51 6.32 5.21 4.84 21.76 3.07 4.75 3.58 2 475956 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 3 367147 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 489709 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 465651 Transcript 0 3.10 6.34 3.52 7.42 2.07 11.02 4.63 8.46 10.88 1.63 1.48 0.00 0.00 2.93 0.62 5.37 3.51 1.91 0.89 24.82 0.00 0.00 0.00 6 471425 Transcript 0 3.71 8.81 7.14 13.40 7.56 24.51 7.14 18.05 15.81 8.08 1.16 0.80 5.75 3.47 9.13 6.46 7.42 7.29 0.86 16.90 0.68 1.12 2.36 7 478555 Transcript 0 7.20 10.76 8.41 16.04 10.29 26.55 8.35 11.00 14.34 8.00 3.87 2.51 5.43 5.00 8.10 6.42 3.26 5.23 3.17 12.22 1.24 3.44 1.97 8 IG4 Intergenic 0 1.81 4.34 8.71 18.49 4.15 4.44 1.52 11.29 11.42 3.20 0.06 0.01 0.03 0.01 0.02 0.00 0.00 2.53 6.11 9.57 0.01 0.15 0.27 9 IG4_SR1 SilentIntergenicRegion 0 1.70 5.91 11.44 14.58 4.12 4.92 1.86 14.29 14.68 4.19 0.11 0.00 0.00 0.00 0.12 0.00 0.00 3.98 7.99 18.15 0.00 0.71 0.73 10 IG4_AR2 ActiveIntergenicRegion 0 3.20 7.99 13.84 14.86 3.33 7.84 3.66 12.09 19.59 4.56 0.53 0.00 0.00 0.00 0.40 0.00 0.00 7.26 10.47 18.64 0.00 0.29 0.00 11 IG4_SR2 SilentIntergenicRegion 0 4.46 9.47 20.55 28.98 5.60 4.87 4.55 22.74 24.84 8.08 0.32 0.00 0.32 0.11 0.00 0.00 0.00 6.48 19.37 19.98 0.09 0.34 0.69 12 IG4_AR3 ActiveIntergenicRegion 0 4.39 10.88 28.93 40.26 9.34 6.18 3.16 23.37 20.40 6.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.74 10.60 18.45 0.00 0.20 0.62 13 IG4_SR3 SilentIntergenicRegion 0 2.79 5.57 11.17 24.59 8.52 4.52 1.66 12.03 11.60 3.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 5.95 12.24 0.00 0.00 0.31 14 IG4_AR4 ActiveIntergenicRegion 0 5.01 9.39 15.79 46.55 9.69 5.62 2.34 36.11 23.25 8.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 10.66 20.42 0.00 0.00 0.00 15 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 16 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER1b ExonRegion 0 0.00 0.00 0.36 0.00 0.00 12.54 0.72 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E1_Ac KnownBoundary 0 0.00 0.00 1.27 0.00 0.00 32.65 2.08 0.00 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER1c ExonRegion 0 1.16 0.00 2.16 1.67 1.96 19.36 0.24 2.10 6.44 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 20 E1a_E2a KnownJunction 0 0.00 0.00 3.05 2.06 0.00 44.86 2.25 2.55 12.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER2a ExonRegion 0 0.13 0.00 3.95 5.41 0.69 21.01 0.52 4.84 14.88 2.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.11 0.55 0.56 1.24 0.00 23 E2a_E3a KnownJunction 0 3.04 0.00 8.34 9.22 0.00 27.31 0.00 4.97 12.44 4.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.58 0.00 0.00 2.88 0.00 24 ER3a ExonRegion 0 1.97 0.40 5.95 3.51 0.52 31.65 1.03 4.89 16.96 2.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 2.71 0.00 0.00 3.13 0.00 25 E3a_E4a KnownJunction 0 0.00 0.00 8.54 5.76 0.00 35.43 0.00 4.11 19.21 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 26 E3a_E7c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER4a ExonRegion 0 1.15 0.00 4.98 4.76 2.42 33.37 1.42 5.61 26.32 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 2.41 0.00 1.33 1.26 0.00 28 E4a_E5a KnownJunction 0 13.63 0.00 5.03 11.15 0.00 55.20 7.68 4.11 33.85 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER5a ExonRegion 0 3.90 0.00 3.17 7.39 0.74 43.71 2.01 9.67 23.32 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.59 0.00 30 E5a_E6a KnownJunction 0 0.00 0.00 4.44 8.99 4.24 16.30 0.00 6.45 21.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 31 ER6a ExonRegion 0 0.23 0.00 5.01 4.41 3.89 27.89 1.81 4.73 22.33 0.50 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.01 0.03 1.37 0.00 32 E6a_E7c KnownJunction 0 3.70 0.00 2.84 5.43 4.33 58.83 10.02 13.10 22.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 2.27 0.00 33 E7_Aa NovelBoundary 0 0.00 2.63 1.60 1.50 0.00 2.27 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 14.09 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 34 ER7a ExonRegion 0 3.10 6.34 3.52 7.42 2.07 11.02 4.63 8.46 10.88 1.63 1.48 0.00 0.00 2.93 0.62 5.37 3.51 1.91 0.89 24.82 0.00 0.00 0.00 35 E7_Ab KnownBoundary 0 13.19 14.21 3.90 5.43 7.98 22.09 4.50 4.56 8.07 1.61 2.05 0.00 0.00 0.00 0.00 7.69 3.65 4.64 4.61 17.00 0.00 0.00 0.00 36 E7_Ac KnownBoundary 0 0.00 2.96 0.00 3.70 0.00 5.45 2.25 11.79 4.31 1.53 5.26 0.00 0.00 0.00 10.51 3.59 4.21 1.78 0.00 2.75 0.00 0.00 0.00 37 ER7b ExonRegion 0 7.89 11.83 4.01 6.19 5.59 22.34 4.57 14.61 14.93 2.92 5.10 0.00 0.00 0.00 8.70 5.94 5.40 6.55 3.19 13.15 0.00 0.19 0.00 38 ER7c ExonRegion 0 3.02 4.50 8.78 12.63 6.08 48.15 5.62 21.24 37.13 3.64 4.73 1.24 2.68 5.38 5.19 5.22 4.99 6.64 1.63 20.87 1.84 1.52 1.14 39 E7a_E8a KnownJunction 0 0.00 8.75 9.22 19.34 0.00 15.56 5.34 24.81 29.92 8.09 5.37 0.00 0.00 2.35 4.45 7.78 4.68 5.55 3.86 34.00 3.15 0.00 0.00 40 I7_AR1 ActiveIntronRegion 0 11.73 17.68 16.28 30.42 15.30 18.97 13.32 21.50 15.99 5.97 1.84 2.04 5.81 5.33 5.56 7.45 6.90 4.21 3.89 13.48 0.33 3.29 2.84 41 I7_SR2 SilentIntronRegion 0 7.16 8.32 9.53 11.77 9.95 13.98 9.38 15.59 10.22 4.24 3.87 1.95 3.63 7.17 9.93 4.20 4.38 3.62 1.74 9.35 1.18 1.02 1.57 42 I7 Intron 0 13.03 3.31 7.19 12.32 12.84 14.52 7.91 12.12 11.24 9.21 4.46 5.06 5.58 7.23 7.91 7.80 6.87 3.28 3.32 6.64 1.30 1.89 2.52 43 I7_AR1 ActiveIntronRegion 0 9.19 4.41 11.88 17.00 13.28 20.74 10.87 13.57 11.13 5.30 3.00 5.21 1.80 7.57 5.71 6.45 6.65 3.99 2.96 9.56 1.02 1.29 1.82 44 I7_SR2 SilentIntronRegion 0 18.82 3.51 6.96 13.64 14.08 12.48 6.49 13.79 14.36 13.96 5.96 4.16 9.36 8.24 10.35 10.25 9.29 3.58 3.76 5.41 1.80 2.46 3.73 45 I7_AR2 ActiveIntronRegion 0 8.75 0.93 1.68 5.60 13.52 16.01 10.95 11.83 5.07 6.28 5.33 9.95 3.93 7.99 10.04 8.19 1.52 3.38 2.93 5.87 1.01 1.91 1.35 46 E8_Aa NovelBoundary 0 13.19 16.05 4.94 18.31 15.53 0.00 14.53 14.58 13.17 12.68 2.63 5.85 0.00 9.59 16.44 23.67 12.44 1.95 0.00 9.08 2.72 0.00 0.00 47 ER8a ExonRegion 0 6.17 11.17 10.15 21.38 15.34 52.97 16.63 33.42 47.39 9.16 5.20 9.39 1.32 9.90 11.77 16.12 7.25 12.96 2.96 36.35 0.93 1.38 3.97 48 E8_Da KnownBoundary 0 10.30 8.09 4.82 9.22 10.27 9.65 22.88 14.42 22.48 6.45 4.42 7.65 0.00 2.47 17.06 17.77 0.00 10.78 0.00 15.47 0.00 0.00 3.67 49 E8a_E8c KnownJunction 0 6.37 15.26 14.16 29.17 8.40 96.48 12.14 29.57 36.95 8.81 0.00 6.30 0.00 15.25 4.45 0.00 4.77 4.23 4.80 21.67 0.00 2.51 0.00 50 ER8b ExonRegion 0 3.71 8.81 7.14 13.40 7.56 24.51 7.14 18.05 15.81 8.08 1.16 0.80 5.75 3.47 9.13 6.46 7.42 7.29 0.86 16.90 0.68 1.12 2.36 51 E8_Ab KnownBoundary 0 0.00 2.89 5.47 23.74 18.25 20.22 12.50 14.33 9.26 6.85 0.00 0.00 12.50 0.00 6.30 7.69 4.77 11.36 0.00 18.79 5.25 0.00 0.00 52 ER8c ExonRegion 0 2.54 7.11 11.20 15.92 4.05 10.69 6.38 24.88 17.57 9.70 1.13 3.09 7.34 0.11 9.42 7.03 5.00 7.54 5.96 21.23 2.12 5.24 1.42 53 E8_Db KnownBoundary 0 3.78 0.00 20.76 18.41 3.65 12.55 11.75 23.91 28.53 12.52 2.05 0.00 0.00 2.24 8.90 7.43 4.77 4.77 4.33 12.72 0.00 0.00 8.19 54 ER8d ExonRegion 0 7.20 10.76 8.41 16.04 10.29 26.55 8.35 11.00 14.34 8.00 3.87 2.51 5.43 5.00 8.10 6.42 3.26 5.23 3.17 12.22 1.24 3.44 1.97 55 E8_Ac KnownBoundary 0 12.82 11.77 10.85 20.54 7.56 25.89 1.68 9.16 11.17 7.52 2.47 6.30 0.00 2.18 4.45 0.00 4.77 10.32 0.00 14.32 0.00 0.00 0.00 56 ER8e ExonRegion 0 12.15 33.62 22.27 46.47 7.02 108.04 25.68 42.45 61.06 16.88 4.78 3.61 5.00 17.04 10.15 6.24 6.33 10.19 10.11 43.03 2.52 3.65 2.50 57 E8_Dc NovelBoundary 0 10.45 3.22 3.61 6.96 11.38 5.62 6.49 6.08 6.34 7.58 5.16 6.15 6.33 0.00 0.00 0.00 13.28 6.92 0.00 0.00 0.00 2.94 0.00 58 E8c_E9a KnownJunction 0 3.78 12.50 29.72 50.14 11.54 144.80 24.73 47.03 52.29 16.82 0.00 0.00 0.00 7.24 4.45 0.00 3.65 3.36 0.00 39.50 2.90 0.00 0.00 59 E9_Aa NovelBoundary 0 0.00 2.57 0.00 7.09 7.22 0.00 3.62 6.45 16.09 10.15 2.68 7.65 6.82 4.94 9.39 3.33 0.00 0.00 0.00 5.82 0.00 0.00 0.00 60 ER9a ExonRegion 0 9.34 32.02 29.27 42.54 14.97 86.72 14.28 47.41 69.04 20.98 6.16 8.78 4.08 12.61 4.54 11.72 7.31 8.83 6.37 37.37 4.06 2.90 4.64 61 E9_Da KnownBoundary 0 7.48 30.06 25.61 36.46 8.15 74.90 10.86 51.96 69.56 15.39 2.26 0.00 0.00 9.95 4.45 7.69 9.07 8.17 4.52 29.27 0.00 2.51 4.35 62 ER9b ExonRegion 0 24.79 45.67 36.81 58.79 30.76 108.81 25.35 43.83 72.63 19.23 8.37 15.14 18.68 11.69 16.51 12.09 11.24 7.04 8.05 35.88 5.84 8.26 6.74