Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PHLDA3 Gene 0 13.09 22.03 55.03 52.07 11.64 32.45 16.51 32.18 49.77 38.31 57.33 17.51 20.73 103.48 129.30 100.41 83.95 106.14 28.58 41.82 231.71 89.28 139.36 2 367309 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.33 0.00 0.00 3.49 10.21 6.11 1.44 1.18 7.96 3.53 10.20 0.00 11.86 3 367311 Transcript 0 13.39 20.25 50.48 56.45 13.01 28.87 13.88 33.34 46.71 36.63 54.64 14.70 16.83 84.30 107.74 101.68 89.59 82.03 25.17 33.56 201.41 93.95 138.29 4 485436 Transcript 0 0.37 1.99 2.61 2.50 0.01 4.17 1.15 1.55 2.09 1.16 1.72 1.27 1.40 2.66 3.24 0.59 1.21 2.02 2.21 1.47 2.46 2.54 3.08 5 497057 Transcript 0 2.78 6.28 7.51 8.79 2.16 3.37 3.10 2.08 4.87 3.14 2.56 1.57 1.76 3.31 4.33 8.74 7.52 9.57 5.84 3.28 15.51 4.88 6.92 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.02 0.00 0.00 6.98 20.42 12.22 2.87 0.00 15.93 7.05 20.40 0.00 23.71 7 E1_Ab NovelBoundary 1 0.00 6.71 7.07 6.73 0.00 14.37 4.46 11.25 9.37 15.55 33.17 0.00 0.00 22.13 35.60 57.42 9.54 72.29 78.59 8.76 43.61 0.00 96.97 8 E1_Da NovelBoundary 0 0.00 0.00 12.98 5.93 0.00 10.79 2.12 4.85 12.88 6.74 17.11 0.00 0.00 26.78 14.09 46.83 25.53 50.95 0.00 11.82 53.81 22.17 76.74 9 E1a_E1c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 0.00 0.00 1.32 0.00 0.00 0.85 0.31 0.00 0.19 2.12 10.41 0.00 0.00 9.00 21.65 21.95 6.86 11.80 10.29 5.40 41.70 5.29 37.72 11 ER1c ExonRegion 0 1.18 1.01 10.44 2.37 1.84 13.37 3.31 3.64 8.38 13.19 28.78 4.60 5.87 37.73 35.97 41.00 51.51 19.47 10.96 11.30 100.37 21.31 61.45 12 E1_Ac KnownBoundary 0 2.96 2.57 20.37 5.33 0.00 9.65 0.00 3.78 23.87 15.77 32.17 11.55 0.00 36.79 18.42 47.17 91.35 31.21 0.00 8.18 202.94 15.92 81.35 13 ER1d ExonRegion 0 5.99 10.93 32.64 20.43 5.36 24.40 10.51 16.21 29.79 24.90 56.69 14.31 25.62 110.73 119.58 71.19 61.97 94.01 18.30 30.01 227.00 55.98 101.73 14 E1_Ad KnownBoundary 0 20.52 20.13 72.59 61.93 16.55 60.02 18.42 35.57 63.83 62.94 63.54 41.56 26.95 180.82 178.13 119.28 93.31 192.92 34.54 43.02 337.12 118.85 196.42 15 ER1e ExonRegion 0 15.50 25.80 95.66 72.95 15.32 56.16 24.07 41.99 86.62 70.37 95.66 30.16 46.11 200.40 225.38 161.50 132.40 214.08 42.75 74.05 412.36 138.87 231.77 16 E1b_E2a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E1b_E4a NovelJunction 0 0.00 0.00 4.11 1.66 0.00 5.34 0.00 4.15 1.53 1.34 2.53 0.00 0.00 0.00 4.45 4.36 0.00 0.00 0.00 5.05 6.30 2.82 12.38 18 E1c_E4a KnownJunction 0 16.74 13.88 97.72 71.49 3.57 59.23 27.95 45.51 91.87 70.83 53.91 7.05 12.82 248.16 277.77 163.63 128.56 153.13 50.73 72.16 361.46 119.34 260.27 19 ER1f ExonRegion 0 14.82 19.83 91.90 68.48 6.69 71.98 21.85 41.05 90.47 68.81 65.72 31.39 37.52 233.06 258.94 144.15 141.94 132.11 44.60 67.55 420.36 134.39 207.77 20 E2_Aa NovelBoundary 1 132.91 156.16 183.02 198.01 114.86 108.12 152.10 226.44 160.70 209.04 76.60 58.07 66.72 21.78 81.46 122.28 101.82 292.70 146.26 134.48 112.74 148.61 130.86 21 ER2a ExonRegion 0 1.10 2.68 2.34 6.08 0.03 7.28 3.46 2.10 4.47 3.49 5.15 3.80 4.21 7.99 9.71 1.76 3.64 4.32 6.63 4.41 4.59 7.63 9.23 22 E2_Da NovelBoundary 0 56.01 43.02 16.97 30.67 37.61 43.84 34.36 30.68 30.84 14.72 16.79 25.21 6.17 11.77 38.32 38.79 50.77 24.21 12.80 68.90 26.32 10.84 41.83 23 E2a_E4a KnownJunction 0 0.00 3.29 3.67 1.43 0.00 5.22 0.00 2.55 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 2.78 0.00 0.00 24 E3_Aa NovelBoundary 0 7.33 7.83 19.96 20.94 0.00 0.00 4.50 10.23 7.78 3.60 2.21 0.00 0.00 0.00 0.00 7.60 17.30 1.70 4.80 5.75 19.71 0.00 7.26 25 ER3a ExonRegion 0 5.57 12.55 15.02 17.58 4.33 6.74 6.21 4.16 9.74 6.28 5.12 3.14 3.53 6.63 8.65 17.47 15.04 19.14 11.69 6.57 31.02 9.76 13.85 26 E3_Da NovelBoundary 0 6.52 3.35 23.62 38.92 0.00 2.56 3.80 13.02 10.76 5.67 2.26 0.00 0.00 15.36 17.80 12.48 24.59 18.24 4.80 9.01 30.02 23.33 12.63 27 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 I3 Intron 0 9.81 4.71 7.76 20.40 3.10 7.79 2.56 1.99 4.27 1.98 3.73 1.38 1.49 9.63 13.32 17.22 12.75 12.07 6.15 9.86 21.29 8.85 5.67 29 I3_AR1 ActiveIntronRegion 0 9.96 4.79 7.88 20.72 3.15 7.91 2.60 2.02 4.33 2.01 3.79 1.40 1.52 9.78 13.52 17.49 12.92 12.25 6.25 10.00 21.61 8.99 5.76 30 E4_Aa NovelBoundary 0 10.15 2.50 19.78 18.21 3.99 2.67 0.00 7.39 4.14 2.34 2.58 0.00 0.00 14.60 4.45 10.94 13.46 38.26 13.55 0.00 14.64 25.47 7.94 31 ER4a ExonRegion 0 32.09 48.93 113.04 99.96 21.04 66.44 34.57 71.93 103.60 75.08 99.04 39.34 25.85 196.17 267.51 171.29 165.96 200.26 53.70 97.48 460.72 169.08 267.05 32 E4_Da KnownBoundary 0 7.48 73.34 59.08 54.57 20.12 65.76 34.84 56.07 66.72 56.84 48.49 25.51 13.47 127.02 126.58 120.65 98.27 100.61 17.13 55.99 253.47 104.22 143.32 33 E4_Db KnownBoundary 0 21.11 46.04 78.47 84.70 32.85 38.39 31.71 63.25 54.72 51.63 57.38 12.60 34.41 98.30 186.54 177.39 80.41 143.64 68.61 75.36 254.03 150.21 225.44 34 ER4b ExonRegion 0 14.97 69.58 89.45 89.76 32.30 53.31 35.46 63.46 86.99 70.62 70.55 20.72 31.83 188.63 243.29 209.32 118.83 158.11 51.88 82.83 354.64 172.93 237.66 35 ER4c ExonRegion 0 19.68 39.96 110.18 111.86 24.79 64.28 40.37 79.83 96.11 76.51 124.79 28.74 27.37 174.30 258.82 254.75 154.27 215.19 66.51 82.91 402.50 202.24 315.48 36 E4_Dc KnownBoundary 0 16.89 47.10 143.08 152.59 37.78 63.32 42.31 114.93 112.38 96.68 83.76 31.21 20.45 205.07 319.92 265.49 118.19 295.98 54.78 90.95 420.70 177.64 333.60 37 ER4d ExonRegion 0 25.60 39.48 90.53 110.54 24.18 44.38 24.44 63.03 85.04 60.06 80.51 24.80 27.79 130.87 179.52 162.37 127.67 144.59 39.39 55.83 302.45 166.59 215.13 38 IG39 Intergenic 0 5.01 15.63 18.90 22.52 15.42 12.20 10.57 19.42 12.25 21.73 13.43 12.57 11.22 15.58 16.37 21.09 25.87 30.68 6.59 17.30 31.92 32.34 53.83 39 IG39_AR1 ActiveIntergenicRegion 0 0.00 2.32 1.40 5.45 3.44 0.00 2.46 5.68 0.88 2.79 1.38 0.00 4.02 3.94 2.07 0.00 5.66 6.34 0.00 0.00 8.50 8.04 13.84 40 IG39_SR1 SilentIntergenicRegion 0 5.26 16.39 19.84 23.48 16.14 12.83 11.02 20.27 12.86 22.76 14.10 13.23 11.70 16.30 17.18 22.16 27.06 32.12 6.93 18.16 33.36 33.72 56.16