Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	ATF3	Gene	0	31.57	9.62	199.94	26.43	19.65	9.16	10.31	43.09	80.33	14.39	44.89	67.15	17.74	27.23	31.71	104.69	23.66	13.55	11.80	10.77	109.20	156.02	104.55
2	366981	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	366987	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	391902	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	426071	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	465155	Transcript	0	30.03	5.85	139.51	9.40	12.66	3.63	6.60	26.58	56.01	10.25	23.17	25.24	5.78	7.80	5.88	37.62	5.79	5.29	3.46	1.84	108.51	68.19	57.72
7	341491	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	366985	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
9	492118	Transcript	0	2.01	0.07	18.64	0.97	2.94	0.40	2.08	5.94	15.08	1.06	1.98	3.68	1.76	1.03	1.49	10.55	1.57	0.57	0.93	0.31	21.84	10.44	17.18
10	336937	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
11	464547	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
12	366983	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
13	366984	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
14	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER1b	ExonRegion	0	0.00	0.00	0.03	0.00	0.00	0.00	0.00	0.00	1.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.17	0.00
16	E1a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.45	0.00
17	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.92	0.00	0.00	0.00	3.19	0.00	0.00	0.00	0.00
18	ER2b	ExonRegion	0	4.85	3.81	20.92	0.97	5.17	6.43	2.76	5.69	10.26	3.00	17.51	1.48	0.80	7.90	17.80	36.25	7.69	7.61	8.80	6.33	28.60	34.42	51.24
19	E2a_E4a	KnownJunction	0	0.00	0.00	65.93	8.29	4.33	0.00	0.00	11.54	31.60	8.09	47.17	18.16	6.49	14.95	10.51	18.46	42.36	7.63	4.52	20.33	81.79	23.15	12.46
20	ER2c	ExonRegion	0	0.28	0.00	54.90	5.63	2.68	0.98	0.00	10.83	26.84	6.50	39.17	10.10	4.69	16.13	12.38	14.46	30.59	6.78	6.37	13.76	66.11	22.92	10.38
21	I2	Intron	0	5.22	0.24	22.37	1.19	3.05	0.34	2.76	7.32	26.94	2.65	4.51	16.69	3.51	2.46	3.02	12.27	2.76	0.98	1.23	0.79	39.15	16.73	21.24
22	I2_SR1	SilentIntronRegion	0	4.48	0.32	19.50	1.38	1.71	0.15	2.17	4.63	27.20	2.39	3.86	10.45	2.96	3.12	4.16	12.46	3.05	1.21	1.14	1.02	41.85	13.93	22.52
23	I2_SR2	SilentIntronRegion	0	6.18	0.00	14.28	0.19	2.71	0.53	3.61	9.20	26.90	2.55	6.46	16.30	2.47	1.69	1.04	14.15	1.89	0.53	1.83	0.41	40.96	20.64	20.91
24	I2_AR3	ActiveIntronRegion	0	9.58	0.37	31.90	2.01	4.64	0.50	3.50	15.12	37.75	5.32	5.76	33.40	6.68	2.38	3.07	13.52	2.72	0.25	0.30	0.78	29.87	28.85	23.38
25	I2_SR3	SilentIntronRegion	1	9.69	0.00	33.75	0.20	4.47	0.00	6.63	12.20	32.45	2.62	0.99	33.60	2.40	6.29	1.25	15.20	1.91	1.07	1.77	0.00	39.09	14.25	23.53
26	I2_AR4	ActiveIntronRegion	0	6.42	0.36	37.42	1.16	5.62	0.82	3.11	9.72	34.55	2.09	6.19	25.55	3.78	2.53	2.51	17.55	3.23	1.14	2.27	0.38	56.96	18.29	26.91
27	I2_SR4	SilentIntronRegion	0	3.30	0.00	27.46	1.03	6.76	0.00	5.53	5.47	26.03	2.99	2.86	18.77	8.75	1.93	1.66	8.27	2.57	1.26	0.00	0.83	40.35	19.32	17.58
28	E3_Aa	NovelBoundary	0	21.49	0.00	61.85	1.70	12.82	0.00	0.00	13.88	40.88	5.45	2.47	13.95	15.42	0.00	5.81	7.52	0.00	0.00	0.00	0.00	30.27	31.96	26.72
29	ER3a	ExonRegion	0	4.03	0.15	37.28	1.93	5.87	0.81	4.16	11.87	30.17	2.13	3.96	7.36	3.51	2.06	2.98	21.09	3.14	1.14	1.86	0.62	43.67	20.88	34.36
30	E3_Da	NovelBoundary	0	3.78	0.00	42.25	0.00	0.00	0.00	5.30	15.69	40.88	2.87	5.37	12.30	0.00	0.00	0.00	23.50	0.00	0.00	3.76	3.26	47.57	20.15	11.61
31	E3a_E5c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	I3	Intron	0	4.10	0.29	38.43	1.17	5.57	0.40	4.09	11.29	19.57	1.60	3.05	9.49	3.77	1.83	0.88	6.40	1.66	0.33	0.46	0.61	23.27	13.47	19.20
33	I3_AR1	ActiveIntronRegion	0	2.41	0.33	15.13	1.32	3.91	0.60	5.38	6.69	17.34	0.56	1.57	5.21	1.52	1.96	1.66	7.72	1.07	0.00	0.52	0.00	20.41	14.55	19.08
34	I3_SR2	SilentIntronRegion	0	3.18	0.00	55.60	0.57	6.42	0.00	3.07	12.29	24.35	4.41	5.91	10.55	2.41	2.26	0.58	8.10	1.86	0.34	0.00	0.60	21.03	16.93	21.19
35	I3_AR2	ActiveIntronRegion	0	7.55	0.50	59.68	1.49	7.50	0.45	3.15	17.64	19.32	0.77	2.90	15.29	8.42	1.31	0.00	3.14	2.42	0.83	0.78	1.56	30.18	9.23	18.20
36	E4_Ab	NovelBoundary	0	13.71	0.00	19.25	0.00	12.39	4.77	0.00	7.52	19.50	0.00	0.00	6.30	0.00	0.00	0.00	19.14	0.00	0.00	0.00	0.00	52.02	16.29	15.28
37	ER4a	ExonRegion	0	2.96	2.03	89.70	9.81	2.68	1.47	0.00	13.14	42.49	8.03	41.75	23.38	5.63	15.27	15.09	27.34	36.31	9.98	6.37	20.00	85.50	31.25	21.14
38	ER4b	ExonRegion	0	6.81	2.03	140.92	13.39	3.26	1.83	0.52	19.61	61.00	9.32	48.24	76.42	11.22	26.13	21.95	63.19	31.72	16.79	11.63	25.53	107.02	80.89	77.12
39	E4_Db	KnownBoundary	1	26.52	2.57	294.90	26.20	4.24	2.27	4.06	47.03	117.71	14.34	48.85	88.38	13.47	63.57	45.24	192.94	16.74	33.62	54.03	23.39	141.66	233.79	234.66
40	E4b_E4c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER4c	ExonRegion	0	13.97	2.03	178.66	19.99	2.68	1.83	1.32	27.08	82.18	10.86	48.06	78.80	14.07	49.59	40.81	124.63	24.43	24.64	28.67	25.96	127.23	170.85	148.20
42	ER4d	ExonRegion	0	11.42	1.09	205.21	27.18	6.48	3.83	3.52	36.49	81.01	10.39	50.01	57.27	12.47	47.84	39.43	124.15	19.58	31.75	19.66	16.05	138.88	146.23	141.46
43	E4_Ac	KnownBoundary	0	3.78	3.22	107.12	15.38	15.96	2.78	5.74	23.78	35.62	6.18	21.64	12.15	6.82	9.48	20.03	98.95	9.35	11.44	14.40	8.69	81.11	85.05	83.06
44	E4_Ad	KnownBoundary	0	3.33	0.00	106.35	9.32	0.00	4.60	5.12	20.91	46.44	1.48	33.48	35.71	13.31	4.83	0.00	47.25	21.69	17.20	8.85	11.51	68.45	39.56	57.96
45	ER4e	ExonRegion	0	6.88	13.22	220.26	22.49	20.74	7.34	10.59	44.94	99.43	10.32	78.28	72.52	25.80	34.92	36.99	145.63	46.21	32.80	15.93	14.89	163.63	134.39	135.82
46	ER4f	ExonRegion	0	10.80	12.76	240.69	34.87	18.29	15.58	9.21	43.56	117.21	14.80	73.70	81.23	37.78	54.94	39.61	150.81	37.70	24.05	17.18	19.70	145.18	183.06	107.90
47	E4_Dc	NovelBoundary	0	0.00	0.00	20.58	2.06	8.66	0.00	8.66	6.04	7.35	0.00	5.21	6.30	0.00	4.94	0.00	32.81	0.00	2.57	0.00	0.00	43.18	14.51	22.45
48	E4c_E5a	KnownJunction	0	16.08	14.54	295.55	48.75	11.63	31.86	2.25	37.95	111.66	23.69	83.86	90.78	48.05	71.99	35.48	204.99	40.39	16.79	29.93	20.01	141.90	293.25	130.86
49	I4	Intron	0	13.88	0.30	22.52	1.99	6.68	0.72	4.67	8.70	16.13	5.60	3.59	7.56	3.24	3.06	2.69	10.91	4.04	0.72	0.94	0.83	54.02	17.44	20.55
50	I4_AR3	ActiveIntronRegion	0	14.45	0.31	23.44	2.07	6.95	0.75	4.86	9.06	16.79	5.83	3.74	7.87	3.37	3.19	2.80	11.36	4.20	0.75	0.97	0.87	56.24	18.15	21.40
51	E5_Aa	NovelBoundary	0	10.00	0.00	54.17	0.00	29.46	0.00	27.78	11.75	34.81	4.16	2.32	11.55	20.45	5.00	0.00	3.67	4.58	2.20	4.80	0.00	73.76	25.23	18.52
52	ER5a	ExonRegion	0	42.57	25.80	255.24	48.04	33.69	22.60	18.68	54.09	134.79	20.22	113.38	157.46	47.99	73.84	54.05	237.77	59.08	24.98	33.56	19.03	204.35	303.29	192.02
53	E5_Da	KnownBoundary	0	16.23	13.02	131.57	7.13	7.72	7.84	4.37	19.02	55.50	7.04	29.22	13.95	0.00	9.89	0.00	48.53	9.35	4.02	0.00	0.00	63.88	45.56	56.08
54	E5a_E5b	KnownJunction	0	0.00	0.00	3.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.51	4.01
55	E5a_E5c	KnownJunction	0	7.48	13.42	195.76	56.90	43.97	30.72	12.94	44.81	102.57	11.01	98.02	174.51	40.91	75.87	53.90	202.77	52.55	17.66	20.61	15.21	114.41	205.68	159.29
56	ER5b	ExonRegion	0	30.03	5.85	139.51	9.40	12.66	3.63	6.60	26.58	56.01	10.25	23.17	25.24	5.78	7.80	5.88	37.62	5.79	5.29	3.46	1.84	108.51	68.19	57.72
57	E5_Ab	KnownBoundary	0	38.53	14.54	177.85	10.52	8.15	0.00	4.46	40.25	60.91	23.16	13.21	12.30	0.00	4.94	10.75	31.19	0.00	0.00	4.14	2.88	74.81	64.91	43.88
58	ER5c	ExonRegion	0	28.16	8.14	156.38	8.65	11.63	1.41	5.80	27.34	51.72	16.06	13.34	7.37	4.85	5.05	8.59	32.78	9.36	3.24	9.19	2.76	112.76	54.11	51.85
59	E5_Db	KnownBoundary	0	33.34	6.58	70.49	6.09	6.79	0.00	5.52	13.72	26.82	1.58	7.05	0.00	0.00	2.47	4.45	37.34	9.16	0.00	4.80	0.00	91.99	23.02	52.93
60	E5_Dc	KnownBoundary	0	25.04	10.00	84.09	6.76	7.98	2.84	2.12	18.20	37.35	8.81	7.58	0.00	6.66	4.94	16.07	24.27	0.00	4.73	9.60	0.00	86.24	37.90	71.88
61	E5c_E5c	KnownJunction	0	0.00	0.00	11.56	0.00	0.00	0.00	0.00	3.90	1.24	0.00	0.00	0.00	0.00	0.00	0.00	3.59	0.00	0.00	0.00	0.00	0.00	5.94	0.00
62	ER5d	ExonRegion	0	29.30	12.31	108.22	6.96	7.04	1.83	3.69	22.20	43.29	7.91	9.77	1.14	4.69	4.53	10.08	43.80	6.60	2.82	9.56	0.78	122.36	42.44	80.99
63	ER5e	ExonRegion	0	17.00	2.28	101.52	5.61	5.06	5.98	1.19	14.22	45.56	13.29	12.19	11.20	5.15	8.24	12.55	29.62	4.34	5.86	11.25	0.16	108.44	44.18	49.06
64	E5_Ac	KnownBoundary	0	19.56	0.00	91.16	4.79	8.66	0.00	0.00	15.28	37.01	7.63	10.90	6.30	0.00	7.06	4.45	32.81	0.00	1.74	0.00	0.00	79.32	33.80	32.44
65	ER5f	ExonRegion	0	51.33	17.34	406.37	69.30	34.89	17.91	18.09	96.52	145.27	22.72	124.61	265.69	69.24	76.37	65.22	272.19	68.98	31.67	38.33	24.20	211.78	358.33	219.20
66	E5_Dd	KnownBoundary	1	32.97	28.02	310.46	43.82	58.49	23.91	26.45	71.63	98.03	17.43	107.03	246.08	25.32	44.68	47.96	186.36	67.79	4.93	23.06	25.06	182.61	239.85	165.69
67	E5_De	KnownBoundary	1	44.67	19.14	177.20	38.69	84.21	13.51	20.18	75.90	111.05	10.69	66.54	215.92	13.64	35.55	43.02	179.10	43.95	23.79	35.95	21.22	177.30	370.22	224.76
68	ER5g	ExonRegion	1	38.94	27.25	339.55	55.47	72.91	19.35	21.91	108.37	148.34	17.83	108.15	274.06	32.36	49.86	52.80	234.65	70.14	21.43	32.65	28.51	238.55	366.07	233.76
69	ER5h	ExonRegion	1	47.24	9.88	387.83	68.05	62.64	27.38	15.60	112.26	156.68	19.95	93.99	292.55	29.40	55.92	64.09	303.32	73.74	48.93	22.98	25.84	172.83	421.43	281.39
70	E5_Df	KnownBoundary	1	64.90	12.63	629.37	87.70	81.92	45.83	22.96	123.84	163.13	28.58	74.65	337.91	48.70	67.81	56.00	340.77	77.89	54.93	27.20	27.87	148.02	457.23	297.58
71	ER5i	ExonRegion	0	61.21	19.15	375.86	56.22	36.90	18.26	20.03	81.12	140.24	27.54	80.53	119.03	31.73	51.94	70.49	197.68	44.84	24.43	18.27	22.38	146.49	316.50	182.23
72	ER5j	ExonRegion	0	3.53	2.03	3.27	2.27	0.89	0.00	1.32	0.58	1.65	0.76	1.93	4.33	0.00	1.08	4.84	2.97	0.00	0.00	0.00	0.00	0.00	7.64	1.96
73	ER5k	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.90	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00