Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DTL Gene 0 38.00 152.78 67.27 61.06 129.23 38.86 144.80 114.55 33.62 120.96 284.53 220.70 123.82 190.61 92.59 165.15 204.89 178.29 44.33 208.81 3.26 22.64 8.42 2 318866 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 420235 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 366991 Transcript 0 15.12 92.98 40.12 31.30 118.56 44.14 160.65 74.49 29.41 110.66 357.82 304.31 137.36 224.53 83.63 170.46 270.48 145.80 27.39 258.22 3.57 31.19 17.13 5 475419 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 489149 Transcript 0 1.29 4.36 1.36 4.28 4.30 1.70 7.57 3.15 2.43 5.37 16.91 11.91 7.71 9.45 4.56 13.27 17.09 6.07 1.82 11.93 0.24 1.86 0.52 7 463791 Transcript 0 1.12 1.91 0.65 0.60 1.10 0.22 3.91 4.10 1.21 1.69 2.65 5.38 4.80 1.50 0.99 2.90 2.89 3.62 0.61 3.57 0.01 0.99 0.11 8 496442 Transcript 0 0.00 0.02 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 5.16 36.79 11.48 6.30 27.92 9.63 46.80 10.54 5.53 20.34 65.57 8.13 8.25 66.55 24.06 86.37 70.76 52.62 18.58 99.12 0.42 12.01 1.00 10 E1_Ab KnownBoundary 1 16.00 75.58 55.32 26.70 90.32 20.67 126.66 62.43 28.82 89.10 241.38 98.88 26.30 120.14 31.52 176.36 159.61 326.28 20.80 238.03 0.00 22.84 3.59 11 ER1b ExonRegion 1 2.98 16.99 38.75 21.03 14.83 5.58 29.29 32.41 20.86 84.13 353.12 76.35 47.29 121.93 35.12 105.94 265.72 198.54 51.80 233.75 4.68 12.57 3.79 12 E1a_E2a KnownJunction 1 3.78 14.93 66.76 37.52 7.72 2.90 14.97 62.97 31.54 109.09 502.23 75.17 45.29 320.27 107.92 401.60 333.05 365.41 212.90 556.02 0.00 41.33 16.90 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 4.63 1.67 10.32 0.00 6.82 23.60 0.00 11.88 7.95 22.84 0.00 39.12 0.00 2.63 0.00 14 ER2a ExonRegion 0 6.99 49.56 26.48 30.33 66.15 14.52 100.79 51.80 27.55 85.03 279.32 126.38 86.77 252.78 67.79 325.07 221.63 322.52 63.10 328.86 2.40 35.25 18.25 15 E2a_E3a KnownJunction 1 3.11 93.67 21.88 30.13 151.36 59.23 296.91 73.28 18.95 78.01 244.80 153.20 78.89 211.90 33.62 134.75 207.67 140.69 19.95 251.64 2.90 8.08 14.94 16 E2a_E13c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER3a ExonRegion 0 15.14 141.28 26.09 29.76 94.33 46.70 183.25 68.46 26.80 97.17 362.06 171.43 108.06 220.44 60.31 173.58 260.40 221.71 41.92 290.09 4.94 22.83 6.64 18 E3a_E4a KnownJunction 1 35.27 184.97 27.41 30.70 81.32 31.74 150.77 79.36 31.13 127.70 468.22 188.16 174.66 332.98 56.74 252.41 287.24 257.96 62.50 392.20 7.60 50.15 15.54 19 ER4a ExonRegion 1 22.39 135.40 28.52 37.41 59.82 30.97 94.92 82.19 29.64 110.53 432.16 281.83 171.11 330.88 71.97 211.84 312.63 278.86 68.95 356.66 4.37 34.55 15.63 20 E4a_E5a KnownJunction 0 31.26 134.71 33.74 48.51 61.29 29.53 88.99 111.11 26.45 117.60 384.94 386.38 210.38 304.14 72.69 207.81 309.96 272.68 40.94 347.20 5.25 27.74 28.43 21 ER5a ExonRegion 0 22.42 116.86 34.30 42.35 52.63 27.96 127.41 97.75 31.94 145.97 452.23 273.15 145.93 289.08 85.24 261.92 334.21 303.05 48.78 367.87 7.21 32.46 16.75 22 E5_Da NovelBoundary 0 0.00 3.35 25.78 7.72 0.00 0.00 16.38 11.13 3.21 11.42 5.37 5.70 6.66 0.00 18.54 22.56 8.98 21.60 3.67 25.57 0.00 0.00 0.00 23 E5a_E6a KnownJunction 0 12.97 148.79 40.71 39.82 102.55 66.10 157.57 83.91 26.97 150.70 432.32 296.65 186.51 378.48 92.59 321.20 313.51 286.44 82.26 380.18 6.30 26.02 8.28 24 ER6a ExonRegion 1 6.67 114.99 43.19 38.06 96.53 43.68 152.74 89.59 34.94 139.47 443.22 312.90 122.15 326.40 68.66 273.89 312.43 303.95 59.75 313.12 8.41 17.17 12.55 25 E6a_E7a KnownJunction 0 17.78 140.70 63.13 40.35 118.93 41.51 150.82 113.45 51.13 159.53 496.81 276.54 132.95 280.54 87.52 296.16 338.66 355.01 69.74 330.07 8.28 12.80 11.78 26 ER7a ExonRegion 0 20.62 128.33 57.53 49.03 97.30 60.81 189.22 100.66 46.60 168.71 538.08 397.24 196.86 312.19 85.24 286.88 410.89 331.11 60.41 376.41 8.91 30.98 21.05 27 E7a_E8a KnownJunction 1 18.23 130.17 54.82 44.45 142.28 83.70 188.93 99.69 39.76 155.29 434.43 660.07 303.55 305.14 112.24 266.60 372.60 268.83 61.55 353.91 0.00 25.35 11.87 28 ER8a ExonRegion 0 11.98 115.50 59.76 34.35 128.44 62.80 166.43 98.90 39.51 141.46 454.10 414.99 174.36 299.15 81.00 231.67 386.61 224.63 44.55 310.41 3.19 27.71 11.79 29 E8a_E9a KnownJunction 0 13.93 135.83 58.84 42.62 177.84 52.53 169.19 96.48 50.49 136.35 518.55 215.47 150.15 325.68 100.01 229.85 376.25 147.74 29.55 299.20 6.05 60.31 22.45 30 E8a_E10a KnownJunction 0 0.00 0.00 3.22 3.23 0.00 0.00 0.00 4.52 0.00 2.87 0.00 0.00 0.00 0.00 0.00 3.33 0.00 13.56 0.00 2.43 0.00 3.12 0.00 31 ER9a ExonRegion 0 16.50 119.92 46.25 38.54 109.19 47.15 158.91 94.12 36.52 152.92 503.20 448.27 189.63 293.59 97.81 249.14 389.28 217.82 47.17 322.99 4.03 47.92 15.39 32 E9a_E10a KnownJunction 0 40.67 108.47 67.18 39.52 145.76 58.32 163.53 104.74 40.51 178.69 517.82 695.48 261.83 290.95 184.81 234.81 376.72 220.37 39.25 402.17 4.88 37.96 31.93 33 ER10a ExonRegion 0 21.27 87.95 53.67 40.12 94.90 53.20 164.95 94.04 34.61 149.57 473.47 389.57 197.12 283.62 111.13 239.16 329.68 157.87 42.44 306.93 5.73 41.25 21.45 34 E10a_E11b KnownJunction 0 28.08 99.85 36.69 35.06 89.98 38.67 205.84 96.20 34.55 172.40 409.63 358.62 208.75 221.20 131.53 260.44 369.14 200.34 40.66 286.16 8.59 44.39 11.61 35 ER11a ExonRegion 0 1.29 4.36 1.36 4.28 4.30 1.70 7.57 3.15 2.43 5.37 16.91 11.91 7.71 9.45 4.56 13.27 17.09 6.07 1.82 11.93 0.24 1.86 0.52 36 ER11b ExonRegion 0 27.61 114.30 40.96 35.22 99.79 65.26 139.44 73.06 26.96 136.74 457.39 364.68 169.55 270.82 106.26 221.58 353.43 204.13 53.10 278.32 6.51 29.80 13.32 37 E11a_E12a KnownJunction 0 9.93 105.51 45.74 21.08 75.38 36.34 76.22 64.24 20.08 147.07 365.88 320.50 188.30 263.64 85.67 295.73 319.21 210.33 46.59 161.84 11.43 13.66 29.45 38 I11 Intron 0 2.19 23.45 5.28 12.14 20.11 6.36 32.46 22.16 10.40 11.44 3.33 8.32 5.63 1.35 1.40 4.23 5.32 13.38 2.04 49.10 0.05 0.58 0.18 39 I11_AR1 ActiveIntronRegion 0 2.23 31.20 2.68 9.77 19.43 8.98 38.96 17.63 12.50 11.55 3.05 8.95 11.86 2.65 0.47 6.27 3.03 10.82 0.10 53.71 0.00 0.56 0.12 40 I11_AR2 ActiveIntronRegion 0 2.15 18.01 2.82 10.73 17.81 9.17 46.07 21.14 7.36 5.93 3.34 9.52 14.41 2.41 0.00 0.00 12.54 15.97 4.87 57.63 0.00 0.00 1.72 41 I11_AR3 ActiveIntronRegion 0 0.00 10.07 0.49 10.97 8.56 2.57 31.71 24.72 12.91 7.51 0.68 7.79 7.97 0.00 0.00 1.78 13.53 21.06 6.05 73.72 0.00 0.00 0.00 42 I11_AR4 ActiveIntronRegion 0 0.00 11.79 0.00 8.45 2.85 1.83 18.36 22.93 13.59 7.11 0.00 12.99 5.94 0.00 0.00 6.93 0.44 16.88 0.85 67.52 0.00 0.00 0.00 43 I11_AR5 ActiveIntronRegion 0 0.00 14.24 0.00 7.81 3.89 1.67 28.77 18.07 15.16 6.26 1.93 8.66 5.97 0.00 2.90 11.89 3.30 15.29 0.00 67.12 0.00 0.00 0.00 44 I11_AR6 ActiveIntronRegion 0 0.00 11.67 0.32 8.39 11.55 0.00 31.50 19.38 13.00 8.75 3.46 5.24 15.30 0.00 2.90 9.70 7.12 15.46 1.68 54.54 0.00 0.00 0.00 45 I11_AR7 ActiveIntronRegion 0 0.12 5.54 1.23 6.81 24.23 1.43 38.98 21.22 11.60 10.64 7.73 8.66 14.07 0.54 0.48 5.12 17.97 12.42 3.72 57.45 0.00 0.00 2.12 46 I11_AR8 ActiveIntronRegion 0 2.12 7.12 1.23 8.32 26.95 5.50 54.05 21.30 7.76 12.53 5.25 7.42 2.68 1.62 0.00 4.03 17.33 9.83 5.35 60.49 0.00 0.00 2.94 47 I11_AR9 ActiveIntronRegion 0 2.12 8.13 1.23 12.49 18.73 7.34 65.09 23.91 8.03 14.34 3.87 18.04 0.00 1.08 0.00 5.94 9.90 15.71 3.19 63.83 0.00 0.00 2.94 48 I11_AR10 ActiveIntronRegion 0 1.29 9.04 0.88 13.02 19.77 8.35 58.99 18.72 10.02 14.15 3.87 20.44 1.30 1.62 0.00 2.97 2.75 18.79 5.31 61.35 0.00 0.00 0.00 49 I11_AR11 ActiveIntronRegion 0 0.00 8.22 0.00 11.14 16.99 9.57 37.65 16.91 13.05 11.42 3.53 18.82 19.58 1.13 0.00 1.81 3.30 17.67 9.56 62.26 0.00 1.09 0.00 50 I11_SR2 SilentIntronRegion 0 3.09 32.85 7.25 16.93 28.48 9.32 38.65 31.03 13.92 13.69 3.52 9.43 5.20 1.42 1.28 3.41 4.77 16.24 2.44 55.15 0.00 0.83 0.13 51 E12_Aa NovelBoundary 0 0.00 112.68 16.17 25.04 19.19 5.00 29.01 45.72 8.91 17.27 19.06 6.30 0.00 0.00 0.00 4.27 12.16 40.87 0.00 37.97 0.00 0.00 0.00 52 ER12a ExonRegion 0 20.37 132.77 54.56 51.11 99.42 36.31 126.25 112.43 34.17 141.45 439.50 235.86 172.54 328.31 126.53 296.29 350.26 410.02 74.08 251.89 7.05 21.53 26.43 53 E12a_E13b KnownJunction 0 30.08 176.68 81.78 72.72 170.88 59.85 159.56 162.78 50.03 172.24 502.29 262.44 153.07 322.21 121.27 387.68 386.82 473.23 188.71 353.01 3.15 34.78 27.06 54 ER13a ExonRegion 0 1.12 1.91 0.65 0.60 1.10 0.22 3.91 4.10 1.21 1.69 2.65 5.38 4.80 1.50 0.99 2.90 2.89 3.62 0.61 3.57 0.01 0.99 0.11 55 E13_Ab KnownBoundary 0 0.00 0.00 0.00 1.73 0.00 0.00 6.76 2.38 1.79 0.99 2.68 5.40 0.00 0.00 0.00 0.00 9.54 2.57 0.00 2.36 0.00 0.00 0.00 56 E13_Ac KnownBoundary 0 30.08 128.40 53.01 54.04 114.52 44.75 113.06 107.33 37.44 128.51 342.30 125.74 119.15 233.33 96.79 171.75 262.65 254.03 46.78 234.51 0.00 22.84 18.69 57 ER13b ExonRegion 0 31.75 162.43 70.84 67.04 144.49 55.47 148.04 156.75 51.33 172.68 519.71 222.97 164.44 350.81 125.12 317.83 399.00 462.17 132.19 324.07 3.03 27.61 26.25 58 ER13c ExonRegion 0 20.72 144.97 77.87 68.56 162.01 59.62 183.49 156.91 52.46 178.25 489.58 241.25 150.28 323.99 113.25 311.55 365.87 401.78 75.49 275.52 6.69 22.95 19.89 59 E13a_E14a KnownJunction 0 34.90 155.43 80.39 87.50 198.47 114.99 182.88 199.99 63.80 169.77 444.22 235.88 146.42 312.91 151.93 358.20 417.30 550.58 115.86 363.24 5.44 21.06 37.90 60 ER14a ExonRegion 0 35.48 131.07 71.54 66.51 103.34 57.46 138.03 147.69 50.98 173.97 403.93 161.35 137.75 283.59 113.10 329.31 327.45 439.50 81.18 279.23 9.46 24.91 20.91 61 E14_Da KnownBoundary 0 44.82 136.09 59.02 62.76 133.53 53.78 216.97 130.29 44.68 143.82 319.66 149.60 103.24 310.26 110.88 284.88 295.28 318.94 59.30 373.34 7.91 24.62 12.12 62 ER14b ExonRegion 0 39.02 129.72 58.66 61.55 110.84 44.55 135.97 125.90 34.41 118.08 355.55 183.51 149.70 284.27 110.64 236.57 288.32 355.26 59.51 285.49 5.75 21.20 10.81 63 E14_Ab KnownBoundary 0 63.94 113.99 58.57 61.30 186.42 36.29 163.53 159.70 27.17 104.36 357.93 151.25 133.76 258.87 102.36 223.96 342.96 286.36 33.79 255.16 0.00 15.92 0.00 64 ER14c ExonRegion 0 41.04 140.47 82.21 75.92 148.90 37.25 138.67 150.60 34.13 131.45 387.47 162.92 175.70 317.09 144.96 233.42 295.19 353.81 72.38 292.36 2.82 20.37 2.94 65 E14_Db KnownBoundary 0 57.34 203.91 111.50 96.72 197.37 53.21 135.27 136.08 47.54 165.82 390.78 210.67 210.70 340.63 181.84 318.63 288.83 399.20 90.83 331.67 6.05 35.82 3.24 66 ER14d ExonRegion 0 47.59 125.88 110.73 82.93 156.66 61.05 164.99 177.86 48.55 170.42 453.57 193.07 137.98 341.56 172.85 305.81 347.20 417.12 76.02 286.51 6.78 25.75 9.67 67 E14c_E15a KnownJunction 0 62.01 167.21 98.90 82.87 145.67 80.58 200.37 174.65 41.75 130.36 363.51 158.30 96.58 271.06 173.68 301.46 343.52 409.35 85.65 310.13 18.29 17.21 3.84 68 E14c_E16a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER15a ExonRegion 0 58.46 250.18 97.73 95.89 211.41 45.93 207.85 162.14 43.38 148.54 241.86 301.24 154.66 156.19 111.63 116.34 145.10 86.28 39.51 184.25 1.53 25.34 5.19 70 E15_Da KnownBoundary 0 67.72 393.48 95.21 101.95 192.19 43.78 210.74 138.21 25.55 88.38 125.03 124.69 31.65 81.17 98.89 80.32 73.49 57.12 85.27 152.89 3.15 44.58 12.21 71 ER15b ExonRegion 0 95.61 193.77 85.21 55.14 90.09 21.14 76.54 97.97 18.28 79.32 139.24 103.42 69.53 61.38 73.29 55.15 105.80 28.12 29.80 110.34 0.27 16.26 3.25 72 E15_Db KnownBoundary 0 0.00 8.75 9.20 6.29 22.50 0.00 18.33 11.09 0.00 14.91 8.48 25.96 32.47 2.24 4.45 3.16 4.77 3.77 0.00 40.52 0.00 3.12 0.00 73 ER15c ExonRegion 0 1.40 7.02 6.44 5.68 8.64 3.46 14.72 3.83 0.58 7.34 4.74 9.11 6.28 0.53 1.92 3.74 2.49 2.40 1.00 15.08 0.00 1.65 0.92 74 ER16a ExonRegion 0 0.00 0.04 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00