Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KCTD3 Gene 0 68.86 199.53 103.83 191.45 133.00 194.24 119.27 91.21 98.44 136.17 26.53 75.22 39.18 49.11 28.64 27.84 42.34 103.18 75.31 202.53 93.13 160.07 82.93 2 366945 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 366946 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 259154 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 444044 Transcript 0 12.77 50.61 18.37 37.58 21.91 25.25 16.59 13.93 19.18 33.34 3.90 4.10 4.63 4.56 8.55 0.00 2.10 9.07 3.52 30.55 5.34 28.29 6.77 6 448333 Transcript 1 23.32 28.36 21.27 19.47 14.25 9.47 21.98 27.87 15.08 16.37 5.83 28.75 38.83 13.86 26.79 14.78 23.20 23.50 23.65 30.21 14.20 15.75 23.81 7 452413 Transcript 0 2.70 31.00 5.36 12.42 22.49 23.11 21.57 15.00 15.39 30.58 1.77 1.92 6.25 1.40 0.24 0.00 0.18 16.65 0.09 24.95 5.43 6.54 0.73 8 495537 Transcript 0 10.28 44.80 8.46 41.53 47.99 41.81 26.55 23.56 28.50 26.43 2.72 4.19 4.46 3.49 1.93 2.17 8.00 7.53 6.20 27.31 6.32 12.27 6.91 9 465650 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 IG35_AR1 ActiveIntergenicRegion 0 0.00 3.45 0.98 0.00 0.00 0.30 1.60 0.00 1.08 1.89 0.57 0.00 0.00 1.60 0.00 0.00 1.94 2.87 5.58 9.89 21.02 3.66 7.39 11 ER1a ExonRegion 0 1.26 7.81 3.08 2.71 2.07 13.27 7.56 3.90 6.36 12.39 4.42 3.57 0.52 10.61 3.66 4.56 7.13 16.91 6.23 32.55 35.56 20.55 19.87 12 E1a_E2a KnownJunction 0 9.85 54.46 17.00 22.84 24.02 52.92 42.26 33.80 35.27 57.48 27.48 23.86 0.00 27.02 14.34 12.13 27.49 75.90 8.47 142.47 87.17 42.68 63.00 13 ER2a ExonRegion 1 15.99 63.34 20.67 33.37 24.08 50.74 55.97 33.19 41.83 72.38 26.49 21.89 4.86 36.42 6.98 21.69 30.14 74.01 21.18 157.88 84.15 81.18 59.33 14 E2a_E3a KnownJunction 0 9.19 57.42 15.14 30.40 36.08 66.84 102.41 23.04 41.90 66.59 31.74 24.91 14.93 41.67 13.35 28.20 36.28 62.30 33.98 207.22 73.52 99.20 66.41 15 ER3a ExonRegion 0 10.35 64.46 37.16 70.16 28.62 79.73 76.65 69.55 68.28 114.62 36.89 29.84 46.70 51.27 16.84 29.33 38.18 108.01 55.88 191.67 59.21 187.65 104.38 16 E3a_E4a KnownJunction 0 20.67 92.75 46.33 97.72 41.68 136.74 61.17 89.29 80.73 128.72 50.38 56.27 77.59 83.35 24.72 34.95 37.31 123.24 97.13 189.13 59.86 337.52 165.35 17 ER4a ExonRegion 0 13.24 58.97 44.54 74.04 38.58 120.71 70.33 78.67 81.18 111.67 60.52 51.84 43.41 62.24 30.70 27.19 64.99 127.17 91.30 188.56 64.03 184.64 131.36 18 E4a_E5a KnownJunction 0 24.00 61.04 57.36 71.52 71.48 122.66 135.27 87.12 68.49 123.46 46.85 58.82 95.61 60.75 35.97 31.44 68.82 89.71 47.44 253.88 47.75 126.75 120.19 19 ER5a ExonRegion 0 22.85 73.79 57.80 75.33 58.91 105.74 91.17 66.09 81.83 114.67 45.37 85.78 40.06 58.80 18.29 21.51 47.89 90.48 46.70 242.26 62.15 163.96 86.21 20 E5a_E6a KnownJunction 0 21.34 77.75 60.14 75.71 46.18 105.68 83.73 43.25 83.97 107.66 37.96 88.98 49.35 46.56 18.54 23.41 52.27 82.37 77.74 236.49 38.24 148.86 75.12 21 E5a_E7a NovelJunction 0 0.00 0.00 1.80 5.83 0.00 8.35 5.70 2.55 3.21 6.02 0.00 0.00 0.00 4.94 0.00 4.36 0.00 4.10 4.05 9.52 0.00 14.76 7.17 22 I5_AR1 ActiveIntronRegion 0 0.53 4.93 4.55 7.48 4.45 1.17 8.89 6.42 6.53 2.57 7.47 12.93 8.68 3.74 0.54 1.78 4.33 3.44 5.42 17.90 0.50 9.12 2.39 23 I5_SR1 SilentIntronRegion 0 0.55 8.94 12.81 19.63 13.13 4.79 17.53 12.43 11.94 7.16 5.43 9.93 18.05 6.21 0.51 5.19 8.40 3.49 1.85 35.92 4.41 15.14 7.21 24 I5_AR2 ActiveIntronRegion 0 1.52 10.14 6.20 8.27 5.65 11.73 14.81 3.38 7.01 5.98 3.32 15.43 8.92 6.98 0.00 2.09 7.11 2.86 2.24 26.58 6.27 15.23 4.22 25 ER6a ExonRegion 0 8.31 64.37 78.59 113.51 46.18 102.47 84.91 74.02 88.67 115.07 42.07 95.78 51.47 55.24 20.09 38.49 67.61 86.55 85.45 254.03 80.50 191.81 107.24 26 E6a_E7a KnownJunction 0 6.74 54.66 95.59 158.16 64.09 132.25 94.77 82.64 109.49 146.40 37.17 61.22 33.60 72.69 43.64 39.22 64.70 113.96 107.11 278.30 123.00 150.82 115.67 27 ER7a ExonRegion 1 17.09 99.19 78.09 114.88 66.04 157.88 104.83 79.97 99.56 138.38 45.13 115.67 63.01 90.43 23.78 40.73 69.39 176.98 95.12 334.46 177.22 183.02 129.79 28 E7a_E8a KnownJunction 1 22.23 78.08 69.34 101.49 113.50 149.86 101.13 69.78 80.67 137.40 49.12 103.38 54.22 99.89 10.01 57.93 58.63 204.45 135.06 322.27 265.89 156.27 154.08 29 ER8a ExonRegion 1 23.33 95.65 83.06 125.43 64.25 164.22 106.72 71.27 107.48 140.83 58.79 110.47 39.63 84.95 13.45 49.77 72.55 262.14 115.65 355.69 236.57 166.43 162.26 30 E8_Da NovelBoundary 0 0.00 17.56 24.33 9.89 23.51 5.11 17.58 7.48 13.40 6.02 2.26 0.00 15.10 19.90 0.00 8.72 15.61 19.32 0.00 34.83 14.39 13.23 11.18 31 E8a_E9a KnownJunction 0 0.00 0.00 1.24 0.00 0.00 0.00 2.25 0.00 0.00 1.56 0.00 12.60 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E8a_E10a KnownJunction 0 27.04 119.06 61.09 111.31 119.35 181.49 137.26 91.39 112.15 132.51 44.80 72.32 58.28 93.06 28.31 40.67 71.62 252.29 156.62 290.89 203.31 207.95 172.09 33 I8 Intron 0 3.44 9.05 12.98 6.61 10.45 4.48 10.06 9.22 3.79 3.43 2.10 14.27 15.70 7.28 2.54 2.90 5.01 2.40 1.90 16.28 2.03 8.82 5.74 34 I8_SR1 SilentIntronRegion 0 3.45 9.06 13.00 6.63 10.47 4.49 10.08 9.24 3.80 3.44 2.10 14.30 15.74 7.29 2.54 2.91 5.03 2.41 1.91 16.31 2.04 8.84 5.75 35 ER9a ExonRegion 0 6.68 16.73 7.48 3.51 10.40 5.60 5.77 10.01 2.25 4.98 2.43 20.26 13.88 12.61 17.08 11.21 13.27 2.53 6.40 18.03 7.91 16.93 9.81 36 E9_Da KnownBoundary 0 52.38 68.08 82.85 94.16 76.06 76.55 84.57 77.22 85.24 57.97 18.74 74.12 62.01 39.85 19.78 80.15 91.07 116.15 56.75 86.48 74.69 47.03 73.16 37 ER9b ExonRegion 1 23.32 28.36 21.27 19.47 14.25 9.47 21.98 27.87 15.08 16.37 5.83 28.75 38.83 13.86 26.79 14.78 23.20 23.50 23.65 30.21 14.20 15.75 23.81 38 E9_Db NovelBoundary 0 207.96 150.43 48.17 69.75 111.21 83.59 149.23 77.18 45.80 41.69 66.86 85.83 56.33 86.53 112.86 209.86 164.00 132.49 101.56 141.00 145.55 78.93 156.21 39 I9_AR1 ActiveIntronRegion 0 3.25 4.41 2.99 12.27 4.89 6.93 10.36 6.49 6.17 11.10 2.03 21.62 17.45 7.24 1.85 3.58 3.96 3.54 2.60 36.18 3.70 13.71 4.65 40 I9_SR2 SilentIntronRegion 0 1.07 7.81 6.09 5.37 8.51 8.37 9.10 6.21 9.45 8.30 1.37 10.46 18.08 7.14 1.50 1.70 2.63 3.78 1.50 27.25 2.10 10.14 0.79 41 E10_Aa NovelBoundary 0 6.82 14.87 5.23 19.74 4.16 9.88 13.82 12.24 8.45 9.80 2.53 12.60 6.82 16.95 4.45 8.03 20.29 22.34 0.00 36.24 15.75 7.35 21.17 42 ER10a ExonRegion 0 33.81 95.45 56.32 99.60 83.69 154.62 101.68 64.05 97.30 114.28 45.07 96.90 43.02 82.59 28.03 42.12 72.71 232.65 111.10 302.56 226.89 190.24 150.40 43 E10a_E11a KnownJunction 1 38.08 125.44 64.40 126.29 85.14 121.18 57.90 60.38 103.41 121.31 40.85 30.61 6.17 82.35 23.49 23.58 94.44 211.62 145.04 294.21 193.12 243.22 98.85 44 ER11a ExonRegion 0 29.98 103.20 75.13 123.36 49.96 150.28 94.83 72.45 93.86 119.71 41.89 62.07 25.59 75.17 29.99 42.40 55.75 225.00 98.31 290.57 205.57 212.25 133.39 45 E11a_E12a KnownJunction 0 31.71 83.08 100.68 160.02 54.07 183.13 74.55 82.19 94.04 123.40 27.32 43.96 27.27 62.16 38.57 39.82 57.13 224.35 121.23 331.60 166.92 230.61 158.26 46 ER12a ExonRegion 0 22.42 108.38 105.70 148.66 56.22 205.82 118.52 70.81 112.44 133.60 35.56 74.83 68.96 68.95 25.72 34.92 44.56 212.83 110.73 344.53 128.29 221.94 127.78 47 E12a_E13a KnownJunction 1 18.45 120.83 125.16 175.64 101.02 254.46 119.42 88.56 124.97 139.01 33.38 99.93 41.23 107.89 24.11 50.33 41.23 211.54 99.67 398.65 124.85 183.95 158.78 48 ER13a ExonRegion 1 40.66 130.76 126.14 158.86 72.37 207.69 121.87 92.05 126.02 154.25 42.37 81.91 50.34 100.71 25.84 53.12 55.96 234.43 131.71 359.57 154.26 228.51 148.85 49 E13_Ab KnownBoundary 0 50.38 164.12 153.39 165.08 89.39 221.58 133.15 91.64 136.66 195.13 48.17 58.97 13.31 66.40 22.99 46.31 55.73 212.49 135.44 343.04 180.95 299.62 125.65 50 E13a_E14a KnownJunction 0 64.16 145.76 95.83 159.95 86.67 248.55 168.97 96.81 102.08 144.81 54.38 57.47 59.25 68.75 24.11 26.49 58.72 179.33 116.90 283.03 186.69 169.37 124.89 51 ER13b ExonRegion 0 41.37 140.84 114.32 151.28 58.09 206.45 132.65 86.09 119.01 158.05 52.38 56.70 34.49 66.48 25.74 30.10 57.50 204.68 128.03 286.00 181.70 207.14 118.51 52 ER14a ExonRegion 0 42.73 112.93 112.93 145.89 87.05 222.11 119.82 81.86 101.68 143.39 42.82 129.40 66.73 89.18 34.41 44.11 64.71 227.71 134.88 291.00 193.08 179.04 150.71 53 E14a_E15a KnownJunction 0 50.16 121.62 116.50 184.16 104.07 233.27 144.63 93.32 122.97 148.22 41.80 158.45 72.56 81.82 39.31 30.33 79.01 206.73 204.81 329.94 153.15 253.32 152.97 54 ER15a ExonRegion 0 45.18 146.91 108.08 127.16 103.62 224.62 126.80 84.92 105.22 145.34 45.32 101.69 48.25 89.27 25.03 44.51 83.64 186.63 140.36 294.20 144.70 189.99 148.00 55 E15_Da NovelBoundary 0 19.04 98.27 16.91 5.66 23.68 2.90 31.09 26.57 15.54 13.81 9.21 38.56 6.49 7.24 15.20 4.36 21.69 16.62 8.85 36.62 3.15 20.76 12.04 56 E15a_E16a KnownJunction 1 46.60 201.15 82.97 147.00 110.61 275.30 126.66 76.85 92.82 145.89 33.43 112.54 53.24 74.28 15.95 38.54 93.78 167.31 123.30 271.52 161.30 176.72 115.50 57 I15_AR1 ActiveIntronRegion 0 6.04 59.06 19.16 15.76 7.63 4.85 15.56 12.49 7.07 14.63 1.88 11.14 10.98 4.23 1.83 2.99 4.83 1.95 4.28 19.10 2.22 16.12 6.26 58 I15_AR3 ActiveIntronRegion 0 2.12 10.17 1.23 9.54 4.46 5.62 24.01 3.46 1.24 1.15 1.93 11.55 15.63 3.79 0.00 2.97 4.62 2.46 0.00 41.56 5.88 16.53 0.00 59 ER16a ExonRegion 0 51.21 156.19 88.88 131.38 106.01 286.60 120.07 75.61 101.29 141.96 31.84 141.31 61.50 82.28 26.50 37.50 81.20 170.83 149.52 286.99 175.25 197.46 126.91 60 E16_Da NovelBoundary 0 7.41 32.82 2.81 13.55 29.29 23.74 34.71 19.26 23.58 27.83 11.63 26.56 26.95 0.00 0.00 4.36 16.92 4.97 3.86 51.20 5.37 10.35 4.01 61 E16a_E17a KnownJunction 0 0.00 20.06 8.04 8.76 16.21 19.53 7.95 7.23 6.37 21.14 0.00 0.00 0.00 2.47 0.00 0.00 3.55 6.51 9.41 2.75 0.00 0.00 0.00 62 E16a_E18c KnownJunction 1 67.86 148.53 77.76 102.68 134.47 231.97 106.08 76.15 56.05 106.40 38.59 87.33 38.31 87.65 21.26 18.54 74.15 132.65 144.00 277.02 204.48 215.97 128.98 63 I16 Intron 0 3.14 25.36 4.28 20.23 14.48 16.51 16.68 10.45 20.70 16.86 1.40 9.72 11.74 2.88 1.27 1.76 3.16 5.77 5.67 30.39 3.05 11.20 4.46 64 I16_SR2 SilentIntronRegion 0 3.19 25.72 4.29 20.45 14.62 16.65 16.88 10.58 20.91 17.03 1.42 9.85 11.90 2.88 1.29 1.79 3.15 5.83 5.70 30.60 3.05 11.32 4.47 65 E17_Aa NovelBoundary 1 21.49 112.41 20.61 50.48 40.24 66.95 40.32 39.14 50.87 37.36 4.69 0.00 42.37 7.83 0.00 11.54 18.14 26.99 3.95 57.33 17.30 25.47 20.57 66 ER17a ExonRegion 0 7.00 51.59 7.03 8.07 39.32 50.82 37.10 12.77 9.00 21.79 2.64 2.30 16.37 4.31 0.00 0.00 0.47 12.86 4.16 41.03 10.12 19.05 5.63 67 E17_Da NovelBoundary 0 9.63 67.82 10.91 63.46 69.69 38.61 36.39 23.37 38.57 60.04 10.48 6.30 33.28 7.18 0.00 0.00 9.26 31.30 0.00 50.81 20.39 30.92 11.87 68 E17_Db NovelBoundary 0 15.11 46.83 10.02 68.76 68.34 45.71 57.90 37.58 34.20 54.13 2.53 0.00 18.83 4.83 0.00 4.36 8.88 10.53 12.33 102.71 8.83 20.08 0.00 69 E17b_E18c KnownJunction 0 0.00 21.77 5.14 13.25 11.97 21.46 18.86 15.69 17.19 33.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.46 0.00 19.05 3.15 0.00 0.00 70 ER17b ExonRegion 0 5.41 40.22 5.58 11.58 33.00 24.76 24.27 14.31 13.59 27.84 3.54 3.85 12.51 2.80 0.48 0.00 0.37 16.84 0.18 30.85 7.71 13.08 1.47 71 E18_Aa NovelBoundary 0 6.89 64.13 15.94 81.61 66.30 58.32 72.82 32.57 56.54 62.94 2.42 0.00 6.49 0.00 4.45 3.93 11.69 26.61 4.80 50.69 16.06 23.09 15.19 72 ER18a ExonRegion 0 16.39 85.34 12.60 77.26 84.96 79.05 47.56 36.09 52.81 46.90 4.60 4.21 8.25 3.44 2.04 3.73 13.86 9.63 8.49 48.05 7.31 19.03 6.98 73 E18_Ab KnownBoundary 0 46.90 143.33 10.73 93.16 93.29 47.13 64.92 48.47 50.58 58.24 2.68 12.60 0.00 6.77 0.00 4.02 0.00 20.31 0.00 40.59 6.30 14.08 4.35 74 ER18b ExonRegion 0 35.48 138.29 21.96 96.40 110.33 111.02 56.89 37.90 53.64 59.70 3.06 10.36 10.29 3.42 3.32 3.12 5.56 19.62 16.68 45.00 12.76 19.02 6.42 75 E18_Ac KnownBoundary 0 44.60 140.57 29.63 97.72 107.05 122.09 78.34 44.65 62.30 63.74 2.05 5.70 0.00 2.12 0.00 6.75 8.88 24.91 9.60 66.47 28.73 13.90 19.55 76 ER18c ExonRegion 1 79.06 218.56 120.95 236.41 142.27 318.80 155.05 117.35 142.55 191.71 34.64 85.26 82.18 96.50 23.17 45.36 72.32 216.27 121.19 348.02 207.76 232.30 129.12 77 E18_Da KnownBoundary 1 111.35 323.43 150.02 316.01 204.24 442.98 208.76 126.34 178.70 211.03 34.32 93.18 78.89 132.44 34.49 63.15 74.33 300.54 180.05 389.64 170.88 236.42 131.03 78 ER18d ExonRegion 0 64.17 254.09 157.49 303.44 155.40 339.59 120.49 157.87 174.64 240.06 32.73 138.47 60.34 89.95 42.32 60.59 79.86 263.98 204.53 409.17 225.57 261.82 158.36 79 E18_Db KnownBoundary 0 0.00 3.35 1.74 1.56 11.88 0.00 3.53 8.50 2.37 4.46 0.00 0.00 0.00 2.24 4.45 0.00 4.39 2.57 0.00 2.30 0.00 6.06 3.84 80 E18b_E18d KnownJunction 0 99.94 294.82 176.87 277.45 127.59 297.78 137.30 149.55 171.03 257.85 61.86 118.99 67.37 90.35 46.23 48.02 46.75 229.49 173.65 347.58 217.39 229.81 221.86 81 E18b_E18e KnownJunction 0 3.26 12.63 9.31 28.43 8.57 29.93 12.32 9.16 19.50 20.52 4.74 0.00 0.00 7.71 5.93 0.00 4.21 16.17 3.76 27.48 10.69 24.31 11.52 82 ER18e ExonRegion 0 4.18 4.26 4.33 5.80 11.03 4.57 5.54 11.04 4.20 5.97 0.84 4.17 0.68 3.54 1.82 0.61 2.15 5.43 3.91 6.56 5.34 5.52 6.83 83 E18_Ad KnownBoundary 0 0.00 0.00 1.12 0.00 7.64 0.00 3.80 1.81 0.00 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 3.00 2.35 2.94 3.93 84 E18_Ae KnownBoundary 0 40.08 89.72 67.41 119.27 39.47 70.98 69.69 44.48 69.24 106.32 15.85 61.97 11.53 35.38 4.45 16.24 24.50 76.15 42.73 125.53 71.97 95.10 64.71 85 ER18f ExonRegion 0 82.54 267.42 148.47 272.80 135.13 292.19 125.33 139.43 167.36 245.06 65.72 142.87 55.50 99.61 48.84 45.08 52.81 264.23 151.84 337.59 228.45 247.24 197.73 86 ER18g ExonRegion 0 112.02 333.57 146.62 281.50 213.88 378.53 181.78 137.03 185.83 241.56 53.45 131.13 54.15 91.11 36.53 67.46 80.25 277.23 172.18 404.16 257.83 247.75 151.90 87 E18c_E19a KnownJunction 0 209.67 451.76 191.54 347.08 258.49 493.24 226.38 166.76 211.14 273.80 61.49 102.48 40.09 72.11 19.66 92.28 96.49 394.06 357.85 453.05 311.85 343.40 214.86 88 ER19a ExonRegion 0 113.93 270.87 143.91 267.48 197.20 374.44 160.80 115.49 160.93 206.29 38.59 104.41 62.47 77.59 33.08 49.62 76.39 190.51 143.21 327.66 200.34 222.44 129.69 89 E19_Da KnownBoundary 0 127.73 229.43 157.86 311.18 223.51 339.35 152.36 144.01 159.29 210.03 31.27 103.38 66.72 66.34 24.11 48.36 74.15 125.85 103.25 223.07 94.52 201.09 93.39 90 ER19b ExonRegion 0 150.21 402.81 199.29 378.81 259.98 303.91 207.44 160.07 144.34 215.49 26.91 108.38 51.40 49.62 51.66 29.48 40.95 64.52 78.46 222.48 60.85 242.08 83.30 91 E19_Db KnownBoundary 0 47.56 117.22 56.09 97.72 21.56 28.85 27.69 21.60 32.00 78.49 7.42 19.51 39.28 2.47 10.88 0.00 0.00 5.31 7.81 43.85 0.00 65.46 0.00 92 ER19c ExonRegion 1 22.28 88.60 27.42 46.72 35.25 20.57 20.86 18.71 18.86 46.16 3.06 8.19 9.25 1.40 11.17 0.00 0.00 1.97 3.27 33.61 0.00 32.27 2.02