Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KLHL12 Gene 0 86.21 107.58 74.62 119.26 87.83 171.10 70.79 91.28 115.71 100.30 138.36 136.82 103.44 161.32 122.66 150.71 147.84 82.38 66.98 121.51 86.88 61.60 58.53 2 367258 Transcript 0 0.00 0.00 2.12 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 1.74 0.00 0.00 0.00 0.00 3 435533 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 367261 Transcript 0 0.00 0.86 0.00 0.61 1.00 5.09 0.43 0.00 0.77 0.46 0.72 0.00 0.00 2.35 0.94 0.00 3.80 0.05 1.43 0.00 1.05 0.00 0.00 5 367260 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 367259 Transcript 0 11.75 9.26 11.25 16.46 11.48 12.69 10.31 2.41 8.71 9.63 16.28 27.00 13.08 26.63 22.06 18.07 17.98 8.51 4.19 11.42 12.18 13.10 3.48 7 ER1a ExonRegion 0 0.00 0.00 2.12 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 1.74 0.00 0.00 0.00 0.00 8 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 0.00 1.53 0.00 0.02 0.04 0.00 0.00 0.00 0.02 0.03 0.00 0.00 0.00 1.24 0.00 0.09 0.00 1.39 0.14 0.00 0.06 0.06 0.00 10 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER2a ExonRegion 0 0.00 1.73 0.00 1.23 2.01 10.18 0.86 0.00 0.93 0.92 1.45 0.00 0.00 4.71 1.89 0.00 7.59 0.09 2.87 0.00 2.09 0.00 0.00 12 ER2b ExonRegion 0 6.31 16.61 1.51 5.37 3.28 46.46 13.47 3.12 9.47 10.78 21.40 1.32 1.74 23.59 14.98 47.44 41.75 8.60 17.00 16.86 25.97 13.30 17.41 13 E2a_E3a KnownJunction 1 0.00 0.00 4.52 10.45 0.00 13.12 13.34 4.68 22.92 23.58 49.43 7.05 21.59 12.54 21.26 8.03 83.68 19.57 4.24 47.30 40.40 8.02 7.43 14 ER3a ExonRegion 0 11.75 45.74 22.85 35.19 26.09 76.48 31.81 60.49 64.53 66.29 120.76 67.50 50.79 133.42 49.89 139.53 130.99 79.36 56.38 110.11 93.67 40.99 47.12 15 E3a_E4a KnownJunction 0 10.08 120.11 20.67 36.93 19.86 180.52 42.31 72.50 102.46 88.32 207.05 124.99 114.28 191.01 92.71 164.57 196.17 66.74 73.13 129.69 120.16 67.60 43.88 16 ER4a ExonRegion 0 23.82 83.02 39.23 72.82 26.90 118.66 41.27 81.00 120.89 100.17 207.95 187.57 147.64 202.85 87.47 170.49 226.67 83.45 69.11 164.06 118.90 71.34 49.64 17 E4a_E5a KnownJunction 1 3.56 134.12 73.83 136.38 73.17 146.28 128.65 115.87 186.20 165.31 239.80 195.21 159.73 301.43 98.15 155.77 291.26 205.07 176.95 230.36 160.25 101.83 109.95 18 ER5a ExonRegion 0 24.50 93.25 59.37 77.56 53.50 182.48 54.30 71.93 130.24 105.67 205.77 222.97 184.70 248.63 111.67 203.15 247.66 115.06 84.35 150.20 143.93 76.84 71.73 19 E5a_E6a KnownJunction 1 55.42 149.45 62.56 150.50 92.61 226.18 108.95 110.53 179.11 146.10 159.99 203.32 286.67 239.51 96.17 188.16 227.77 174.77 73.70 186.38 182.61 104.46 124.29 20 I5 Intron 0 3.85 2.39 1.53 2.96 4.12 2.98 4.22 3.68 3.25 2.54 6.38 19.77 23.86 10.89 7.29 12.56 9.42 1.16 3.66 5.12 1.97 1.28 1.73 21 I5_SR1 SilentIntronRegion 0 3.87 2.40 1.54 2.97 4.14 2.99 4.25 3.70 3.26 2.55 6.41 19.87 23.96 10.93 7.32 12.62 9.47 1.16 3.67 5.12 1.98 1.29 1.73 22 I5 Intron 0 4.80 3.37 1.52 3.26 4.29 6.69 5.20 3.84 3.36 4.06 7.80 29.51 28.25 14.76 5.94 11.18 9.31 1.58 3.70 6.60 0.85 1.96 2.60 23 I5_SR1 SilentIntronRegion 0 4.81 3.38 1.52 3.26 4.29 6.70 5.21 3.85 3.37 4.07 7.81 29.54 28.28 14.77 5.94 11.19 9.32 1.58 3.70 6.60 0.85 1.96 2.60 24 ER6a ExonRegion 0 37.31 108.01 58.90 90.32 64.86 177.85 62.94 79.85 127.24 108.51 166.55 247.93 166.90 262.22 106.24 241.28 224.55 120.76 85.33 146.84 146.40 72.60 80.93 25 E6a_E7b KnownJunction 0 34.23 139.98 51.51 117.80 90.15 183.08 110.54 99.93 136.72 145.62 165.36 173.76 88.14 277.89 104.70 209.94 205.14 181.81 116.33 159.22 112.31 88.97 56.51 26 I6 Intron 0 17.36 20.97 11.60 30.15 20.79 21.17 19.22 14.96 20.24 14.52 25.61 53.27 36.85 29.22 12.43 31.39 33.43 9.55 9.60 24.02 9.84 15.50 10.45 27 I6_SR1 SilentIntronRegion 0 10.99 18.50 13.84 31.27 17.98 26.24 18.87 16.05 21.94 13.24 24.66 37.25 29.96 32.57 9.32 44.01 40.75 16.68 13.83 33.15 12.96 13.63 10.04 28 I6_AR1 ActiveIntronRegion 0 13.25 13.29 7.55 25.31 20.75 21.30 19.05 16.09 23.87 15.23 32.91 62.89 49.85 37.50 13.72 27.04 35.14 5.87 10.38 22.30 11.01 17.56 9.71 29 I6_SR2 SilentIntronRegion 1 14.84 9.07 6.98 5.18 10.23 9.35 10.13 0.00 1.17 1.09 3.70 47.08 28.14 11.02 1.85 11.37 21.04 2.36 6.09 12.21 4.19 7.97 11.23 30 I6_AR2 ActiveIntronRegion 0 24.30 26.17 15.07 39.76 24.53 20.21 19.60 15.42 19.43 17.88 25.73 55.00 36.11 26.18 15.77 32.54 32.29 9.66 8.13 23.95 9.48 16.00 9.82 31 I6_AR3 ActiveIntronRegion 0 24.65 35.43 11.02 29.79 23.15 18.76 23.22 16.05 19.47 14.49 21.76 62.16 28.72 20.48 13.42 24.04 24.76 7.06 4.90 16.48 5.12 16.98 13.59 32 E7_Aa NovelBoundary 0 30.97 44.60 10.44 17.48 29.03 14.14 15.94 25.63 18.46 27.91 33.32 38.86 26.30 31.73 14.22 64.09 65.45 10.11 13.46 11.70 11.74 13.17 6.83 33 ER7a ExonRegion 0 11.75 9.26 11.25 16.46 11.48 12.69 10.31 2.41 8.71 9.63 16.28 27.00 13.08 26.63 22.06 18.07 17.98 8.51 4.19 11.42 12.18 13.10 3.48 34 E7_Ab KnownBoundary 0 41.04 23.22 21.52 41.65 30.56 25.72 19.92 9.20 27.75 23.64 27.43 49.37 25.81 50.44 39.06 30.50 31.04 13.60 9.04 20.65 23.17 26.39 4.35 35 ER7b ExonRegion 0 63.25 93.24 57.79 89.36 69.22 182.96 48.27 65.95 117.49 111.61 169.15 193.08 145.14 211.65 93.09 227.71 199.94 122.58 65.16 111.87 141.85 62.58 48.43 36 E7a_E8a KnownJunction 0 70.23 97.94 65.31 121.13 50.51 222.26 86.56 80.79 142.65 148.39 139.46 207.07 101.45 178.59 66.51 216.61 131.74 183.06 78.59 161.65 154.26 48.50 51.22 37 E7a_E10a NovelJunction 0 12.82 2.70 1.63 0.00 0.00 0.00 0.00 0.00 4.40 6.45 12.53 12.75 0.00 11.54 4.45 19.57 14.12 1.87 0.00 3.26 5.25 8.70 4.35 38 I7_AR1 ActiveIntronRegion 0 22.30 5.59 1.39 5.95 8.95 2.75 8.99 1.79 1.90 0.00 0.48 2.75 0.36 2.44 3.12 3.83 0.00 1.63 0.00 5.89 2.03 0.00 0.00 39 ER8a ExonRegion 0 78.05 79.50 68.98 91.91 69.12 194.69 58.23 55.75 135.42 115.27 184.10 159.54 87.01 201.30 106.48 252.85 181.02 138.84 92.23 125.17 135.60 56.98 67.19 40 E8a_E9a KnownJunction 0 116.69 115.83 89.74 136.08 54.58 155.59 55.20 94.92 165.59 137.86 176.83 156.95 79.22 201.37 92.59 189.35 147.92 198.89 131.39 206.32 163.28 53.95 87.33 41 ER9a ExonRegion 0 50.84 81.28 71.21 80.97 67.26 150.71 45.86 60.18 115.24 92.07 147.56 83.43 61.57 175.81 103.66 176.37 167.98 109.70 70.18 125.69 136.38 49.30 57.71 42 E9a_E10a KnownJunction 0 91.72 168.98 77.26 111.84 102.29 188.02 114.96 110.74 148.96 119.19 134.93 42.91 80.35 278.24 109.65 175.77 198.78 151.93 86.78 180.50 130.41 76.36 79.73 43 ER10a ExonRegion 0 80.39 103.88 79.16 100.35 71.07 174.53 54.93 88.30 110.63 86.35 163.15 78.97 91.77 194.65 111.85 192.57 193.30 108.77 87.01 130.82 148.70 59.60 67.08 44 E10a_E11a KnownJunction 0 95.65 128.92 103.99 149.70 100.00 223.39 117.83 169.27 192.13 167.89 196.68 72.02 130.84 254.34 112.49 207.38 237.12 153.00 146.17 189.90 195.22 90.99 139.74 45 ER11a ExonRegion 0 64.65 111.31 96.32 151.90 98.79 256.29 59.52 96.99 132.57 129.04 187.63 81.82 93.42 211.04 153.83 246.57 191.75 116.89 117.02 145.11 154.62 59.54 66.95 46 E11a_E12a KnownJunction 0 82.16 138.07 89.74 201.67 98.39 208.35 72.91 121.17 162.21 185.27 159.30 73.97 53.73 157.34 100.01 151.84 160.64 182.39 126.03 172.64 179.71 55.72 85.88 47 E11a_E13a KnownJunction 0 9.63 0.00 3.64 0.00 0.00 0.00 6.36 0.00 5.76 0.00 24.43 0.00 0.00 30.90 21.51 28.62 25.15 8.95 3.58 5.75 11.55 8.02 6.66 48 ER12a ExonRegion 0 88.00 112.71 98.21 152.13 109.63 201.44 59.33 92.90 141.71 117.30 158.29 89.67 75.57 166.94 133.75 200.58 157.07 130.98 84.78 147.30 125.29 57.34 68.31 49 E12a_E13a KnownJunction 1 137.51 228.25 86.78 184.99 215.79 350.99 127.50 118.13 154.74 148.09 148.25 30.01 83.92 243.16 185.30 208.75 155.87 219.95 101.93 183.83 135.91 64.79 98.08 50 ER13a ExonRegion 0 146.49 152.20 105.24 179.18 135.42 216.70 108.30 131.28 142.41 124.38 139.00 169.00 123.40 160.74 172.52 134.05 135.80 72.57 69.44 135.09 58.39 76.91 67.52 51 ER13b ExonRegion 0 2.27 6.97 0.44 2.92 2.68 1.83 2.18 0.74 3.09 0.00 1.93 5.57 0.67 2.90 4.97 0.00 0.00 0.00 0.00 1.67 0.47 2.68 0.00 52 ER13c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00