Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GPATCH2 Gene 0 16.94 19.44 10.29 16.26 21.30 20.95 19.63 13.39 15.76 23.02 13.99 30.57 19.96 24.81 13.89 18.65 27.20 9.48 13.42 22.38 13.13 25.57 16.76 2 366934 Transcript 0 11.45 54.79 18.65 26.78 42.41 37.18 51.79 23.21 15.99 40.86 14.28 31.94 18.58 27.64 9.84 11.96 23.69 7.28 13.67 27.91 6.76 21.38 17.72 3 366935 Transcript 0 24.46 9.83 6.04 8.03 17.93 9.81 7.09 12.65 12.71 13.87 18.01 32.31 15.66 42.01 23.92 31.75 37.76 14.81 8.51 15.21 39.71 39.80 26.99 4 470014 Transcript 0 6.86 0.90 1.35 1.22 3.30 3.76 4.10 3.13 2.14 2.37 3.92 19.09 6.45 8.23 6.78 6.69 10.09 1.15 1.62 3.52 4.89 5.30 7.93 5 485274 Transcript 0 2.45 1.18 0.00 0.59 3.10 0.00 0.80 2.24 2.05 0.50 1.68 7.77 5.84 4.01 2.03 4.86 7.91 0.00 1.85 1.31 2.45 3.59 5.02 6 489246 Transcript 0 3.34 2.43 0.15 0.28 2.98 0.27 1.15 1.42 0.89 1.07 1.54 3.56 2.66 1.80 0.87 2.59 3.94 2.54 2.52 2.00 1.03 0.64 3.76 7 ER1a ExonRegion 0 14.87 12.20 12.61 4.10 19.37 57.47 28.56 5.93 8.29 14.44 12.22 10.19 5.48 30.12 10.88 27.16 39.45 11.20 27.24 30.55 21.80 16.54 22.74 8 E1a_E2a KnownJunction 1 0.00 5.92 13.72 12.02 8.32 2.84 3.53 4.07 8.56 17.11 14.95 6.30 13.31 26.84 4.45 4.10 69.57 13.27 4.42 26.08 60.11 2.94 12.21 9 ER2a ExonRegion 0 21.19 26.29 27.14 32.49 44.93 51.71 40.87 22.97 35.45 52.85 45.68 73.95 65.90 95.45 29.28 72.89 108.53 44.48 48.90 65.03 44.82 52.02 49.60 10 E2a_E3a KnownJunction 0 27.41 51.57 23.12 39.82 46.60 60.42 32.81 23.66 27.84 52.14 60.44 99.78 74.02 65.16 29.42 107.66 124.92 42.53 79.06 98.18 26.26 68.40 59.58 11 ER3a ExonRegion 0 21.92 36.21 18.93 35.81 30.60 41.91 34.36 25.54 30.18 44.97 49.94 84.77 61.65 84.14 30.56 58.68 98.97 40.41 49.89 89.05 37.07 58.37 57.79 12 E3a_E4a KnownJunction 0 36.82 48.35 19.37 34.29 32.77 42.31 39.35 25.75 31.45 36.53 50.38 91.68 103.89 93.24 42.65 50.41 65.54 34.20 27.48 91.72 34.53 68.21 45.33 13 ER4a ExonRegion 0 26.21 28.98 23.57 25.14 37.56 57.17 44.65 20.54 33.94 54.06 42.09 79.78 63.41 84.19 31.52 56.52 83.80 32.11 46.70 64.28 39.22 50.98 44.68 14 E4a_E5a KnownJunction 0 44.23 40.52 21.47 25.57 27.42 41.40 35.24 19.35 37.62 59.96 21.64 36.76 33.93 57.74 54.39 50.07 71.34 23.67 32.38 55.03 42.26 41.46 32.01 15 E5_Aa NovelBoundary 0 10.89 0.00 1.12 5.03 3.99 0.00 3.71 2.55 1.79 3.33 7.42 17.71 6.49 7.42 0.00 4.36 4.77 0.00 0.00 3.26 0.00 3.00 0.00 16 E5_Ab NovelBoundary 0 39.78 25.06 24.22 22.87 33.45 26.18 59.84 20.09 17.16 42.39 19.79 52.82 32.47 77.52 62.30 59.56 47.03 24.33 26.92 50.75 18.78 26.58 38.33 17 ER5a ExonRegion 0 33.96 32.72 22.67 23.29 32.47 39.18 40.74 16.11 32.73 49.89 22.40 44.48 32.40 75.15 61.98 55.12 67.22 27.30 37.36 50.48 33.56 36.46 39.51 18 ER5b ExonRegion 0 26.97 34.57 25.06 20.28 50.24 38.60 50.95 25.66 21.36 37.77 33.03 68.67 33.64 86.72 37.42 53.45 62.55 22.43 34.00 45.08 21.51 53.92 52.45 19 E5_Da NovelBoundary 0 0.00 0.00 1.12 1.60 0.00 0.00 0.00 5.67 2.95 4.89 6.79 0.00 0.00 2.41 5.56 3.59 13.18 5.31 0.00 0.00 2.47 0.00 0.00 20 E5a_E6a KnownJunction 0 6.52 66.11 17.98 16.65 54.50 36.97 57.99 25.10 12.85 34.20 12.11 18.61 12.82 33.26 8.90 12.05 25.99 7.75 9.22 20.65 9.02 14.94 22.28 21 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E5a_E7b KnownJunction 0 16.82 9.08 7.30 5.03 10.27 27.26 3.75 15.48 9.98 6.02 19.79 63.77 13.64 43.68 41.04 32.81 49.09 1.91 8.38 12.46 23.85 18.86 34.15 23 E6_Aa NovelBoundary 0 2.89 0.00 0.00 1.23 4.33 0.00 2.16 1.56 1.16 3.84 4.63 19.81 6.82 0.00 4.45 4.10 8.04 0.00 0.00 0.00 0.00 2.45 3.16 24 ER6a ExonRegion 0 16.38 43.47 19.32 36.92 30.32 37.40 45.60 21.32 19.13 47.52 16.45 45.27 24.33 22.01 10.78 11.88 21.40 6.81 18.11 35.18 4.50 27.83 13.17 25 E6_Da NovelBoundary 0 0.00 9.21 5.97 2.06 4.33 9.14 24.29 0.00 5.09 10.96 2.63 12.60 6.82 2.41 9.77 4.36 21.51 0.00 4.42 8.76 0.00 9.37 8.37 26 I6_SR1 SilentIntronRegion 0 3.13 3.76 3.72 7.35 8.47 8.18 13.15 5.24 6.55 4.78 2.31 8.14 7.08 3.37 2.51 3.67 5.91 1.84 3.80 6.74 1.00 8.78 3.99 27 I6_AR1 ActiveIntronRegion 0 6.58 9.20 9.35 18.26 8.75 8.68 16.14 11.81 5.85 15.26 0.63 17.31 10.19 3.05 2.87 3.49 3.11 0.26 3.41 11.94 0.00 14.42 3.15 28 I6_AR12 ActiveIntronRegion 1 4.23 0.44 0.00 1.95 1.72 0.00 4.63 1.73 0.00 1.15 0.00 25.98 4.69 4.52 2.90 0.00 0.00 0.00 0.00 4.26 0.94 0.00 0.21 29 ER7a ExonRegion 0 12.70 3.05 4.90 2.73 5.35 8.25 4.63 7.78 3.71 2.87 11.60 30.31 4.69 21.93 15.96 14.86 19.81 4.62 4.78 9.57 8.81 14.58 17.62 30 ER7b ExonRegion 0 24.10 12.29 7.57 8.73 6.47 13.22 8.20 12.46 6.84 8.52 12.06 37.93 26.18 43.12 18.58 24.58 48.08 7.67 8.08 13.34 13.98 21.30 22.84 31 E7a_E8b KnownJunction 0 17.11 15.46 5.12 4.43 12.65 15.10 2.08 4.11 6.68 9.75 12.85 12.60 48.05 32.02 4.70 35.20 66.39 10.45 7.53 11.06 8.09 18.37 7.68 32 ER8a ExonRegion 0 2.11 0.88 0.15 0.02 0.76 0.79 2.29 1.06 1.03 0.50 1.86 2.01 3.19 0.27 1.00 1.72 2.89 0.80 0.03 1.50 2.44 1.49 2.46 33 E8_Ab KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 2.25 1.56 2.37 0.00 5.21 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER8b ExonRegion 0 13.57 13.04 7.85 2.76 14.48 12.37 7.71 6.65 7.06 10.62 14.42 28.20 22.85 33.73 18.97 26.98 46.04 12.74 4.00 17.73 20.00 18.38 18.45 35 E8_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 6.30 0.00 2.47 0.00 4.27 12.06 0.00 0.00 2.36 2.41 0.00 3.33 36 E8a_E9a KnownJunction 0 0.00 0.00 1.77 2.06 0.00 0.00 2.34 0.00 1.77 0.00 2.74 0.00 0.00 3.12 0.00 4.61 0.00 0.00 0.00 3.13 6.61 3.31 0.00 37 E8a_E11a KnownJunction 0 9.56 9.34 3.67 0.00 17.32 12.95 7.51 8.26 3.15 8.03 5.21 38.26 0.00 31.02 24.11 18.20 33.29 11.94 0.00 6.46 23.78 26.82 31.76 38 ER8c ExonRegion 0 2.45 1.18 0.00 0.59 3.10 0.00 0.80 2.24 2.05 0.50 1.68 7.77 5.84 4.01 2.03 4.86 7.91 0.00 1.85 1.31 2.45 3.59 5.02 39 ER9a ExonRegion 0 7.67 0.79 0.65 0.79 5.73 1.43 0.87 1.30 0.58 3.32 3.32 8.86 5.20 7.28 1.99 8.59 7.17 1.39 0.90 2.29 5.75 0.07 4.86 40 E9_Da NovelBoundary 0 6.96 3.22 0.00 1.96 3.48 0.00 2.25 0.00 0.00 2.50 4.95 0.00 6.82 4.59 0.00 8.46 16.83 3.48 4.24 0.00 2.29 6.00 0.00 41 E9a_E10a KnownJunction 0 2.89 0.00 0.00 0.00 0.00 0.00 1.90 2.01 0.00 3.73 0.00 30.31 13.47 0.00 4.70 3.85 9.35 0.00 0.00 0.00 2.41 0.00 7.51 42 E9a_E11a KnownJunction 0 7.04 3.35 0.00 0.00 3.06 0.00 0.00 2.42 1.10 2.58 2.11 6.30 0.00 4.83 0.00 3.93 4.77 4.56 7.53 0.00 0.00 0.00 4.35 43 ER10a ExonRegion 0 11.83 0.54 0.48 2.15 7.86 6.79 9.87 2.72 4.86 2.89 4.09 15.75 7.65 10.98 6.48 8.07 11.22 0.00 1.68 4.50 8.32 6.61 6.59 44 E10_Da NovelBoundary 0 24.00 0.00 8.84 4.66 8.49 4.71 0.00 4.72 8.42 1.37 17.27 43.66 35.55 26.61 10.26 6.75 12.06 0.00 0.00 2.88 15.01 11.27 0.00 45 Ix Intron 0 7.50 0.00 0.00 0.00 5.69 0.00 0.94 0.00 0.00 0.00 4.11 2.53 0.00 9.68 1.45 2.11 2.34 0.00 2.26 4.52 0.00 4.43 6.24 46 Ix_AR1 ActiveIntronRegion 0 7.71 0.00 0.00 0.00 5.85 0.00 0.96 0.00 0.00 0.00 4.22 2.60 0.00 9.95 1.49 2.17 2.40 0.00 2.32 4.65 0.00 4.55 6.42 47 I10 Intron 0 26.59 2.51 2.70 0.50 11.87 1.36 3.59 1.27 1.36 0.00 0.95 12.36 5.91 7.25 8.24 7.32 10.57 2.04 2.35 2.10 2.17 8.21 6.51 48 I10_AR1 ActiveIntronRegion 0 26.83 2.53 2.73 0.51 11.98 1.37 3.61 1.28 1.37 0.00 0.96 12.48 5.97 7.31 8.32 7.39 10.68 2.06 2.38 2.12 2.19 8.29 6.58 49 E11_Aa NovelBoundary 0 86.68 2.76 0.00 2.53 20.12 22.43 2.25 6.61 12.38 2.55 14.27 37.81 13.31 47.85 22.87 20.25 17.20 11.11 0.00 12.08 25.58 21.37 23.65 50 ER11a ExonRegion 1 41.97 10.28 6.37 8.54 32.41 14.00 10.31 10.52 10.04 8.76 19.33 51.16 8.46 30.13 31.83 30.77 49.98 10.93 8.34 21.85 39.42 32.54 39.17 51 E11_Da KnownBoundary 0 3.56 0.00 1.83 2.03 7.81 0.00 0.00 0.00 0.00 1.37 2.05 6.30 0.00 2.41 8.90 4.36 8.51 2.40 0.00 5.88 0.00 2.82 11.87 52 E11a_E12a KnownJunction 0 32.38 12.23 5.50 11.92 19.19 0.00 7.82 7.06 16.15 13.89 22.06 31.21 13.31 21.96 22.87 10.85 38.90 5.60 0.00 17.51 48.37 46.23 26.12 53 ER11b ExonRegion 0 0.86 3.05 0.31 0.83 5.14 0.01 1.16 0.76 0.54 0.13 0.66 2.36 4.80 0.30 1.60 2.12 4.15 2.25 0.00 4.51 0.65 0.43 4.47 54 E12_Aa NovelBoundary 0 3.78 0.00 3.43 0.00 0.00 0.00 4.50 2.55 1.79 2.95 0.00 0.00 6.33 4.94 4.45 7.69 4.58 2.57 0.00 8.63 2.90 11.63 0.00 55 ER12a ExonRegion 0 29.77 6.21 8.21 8.64 18.34 14.20 4.92 11.81 16.14 16.37 21.13 41.25 19.66 47.08 24.58 45.68 43.73 21.09 14.46 16.76 46.55 39.73 32.70 56 E12a_E13a KnownJunction 0 32.60 10.06 8.07 11.75 18.59 12.32 8.70 25.51 14.55 20.20 33.43 31.96 33.60 96.24 34.74 71.95 57.32 30.47 22.40 24.54 68.94 62.76 31.93 57 E13_Aa NovelBoundary 0 14.00 0.00 3.19 0.00 0.00 0.00 0.00 2.42 2.66 0.00 0.00 0.00 0.00 9.54 0.00 8.03 0.00 0.00 0.00 5.69 6.18 4.71 8.54 58 ER13a ExonRegion 0 17.99 11.30 4.77 7.82 16.21 9.57 6.50 10.62 13.57 10.87 8.19 18.86 11.74 13.77 13.32 12.09 15.58 4.94 5.69 10.77 10.91 23.44 12.46